Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48494 * 109.47131 * 239.99619 * 3 2 1 5 5 H 1.48493 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47124 * 119.99945 * 3 2 1 7 7 C 1.40158 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99778 * 179.73072 * 7 2 1 9 9 C 1.40734 * 120.00144 * 359.97438 * 7 2 1 10 10 N 1.33976 * 120.29243 * 8.77071 * 9 7 2 11 11 C 1.31602 * 119.90912 * 180.02562 * 10 9 7 12 12 C 1.39202 * 120.52034 * 359.97438 * 11 10 9 13 13 N 1.31995 * 120.59847 * 0.02562 * 12 11 10 14 14 C 1.32935 * 120.07430 * 359.70879 * 13 12 11 15 15 C 1.47606 * 120.25971 * 180.29688 * 14 13 12 16 16 C 1.39839 * 120.15878 * 233.00628 * 15 14 13 17 17 C 1.37768 * 119.97546 * 179.97438 * 16 15 14 18 18 C 1.38540 * 120.34860 * 359.97438 * 17 16 15 19 19 C 1.38550 * 120.38002 * 0.02562 * 18 17 16 20 20 C 1.39160 * 119.91818 * 359.73869 * 19 18 17 21 21 O 1.36295 * 108.72748 * 179.82208 * 20 19 18 22 22 C 1.43999 * 105.56032 * 343.09246 * 21 20 19 23 23 O 1.36542 * 131.47135 * 179.97438 * 19 18 17 24 24 H 0.96999 * 119.99512 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.74304 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.69966 * 180.02562 * 12 11 10 27 27 H 1.08009 * 120.01423 * 359.97438 * 16 15 14 28 28 H 1.08001 * 119.82331 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.80623 * 179.97438 * 18 17 16 30 30 H 1.08996 * 110.57581 * 268.31696 * 22 21 20 31 31 H 1.09000 * 110.57338 * 145.43069 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0948 1.6964 -1.2124 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2138 -0.0049 9 6 1.3041 -2.4326 -0.0005 10 7 -0.0240 -2.4462 -0.1764 11 6 -0.6746 -3.5902 -0.1746 12 6 0.0065 -4.7904 0.0085 13 7 1.3147 -4.8006 0.1835 14 6 1.9962 -3.6592 0.1806 15 6 3.4601 -3.6664 0.3695 16 6 4.0448 -2.8688 1.3581 17 6 5.4115 -2.8789 1.5314 18 6 6.2128 -3.6767 0.7309 19 6 5.6489 -4.4726 -0.2530 20 6 4.2694 -4.4766 -0.4365 21 8 3.9661 -5.3283 -1.4564 22 6 5.2034 -5.5434 -2.1610 23 8 6.2109 -5.3301 -1.1547 24 1 -0.4849 0.8401 -0.0004 25 1 -1.7451 -3.5980 -0.3170 26 1 -0.5406 -5.7215 0.0072 27 1 3.4253 -2.2451 1.9855 28 1 5.8606 -2.2616 2.2954 29 1 7.2833 -3.6775 0.8741 30 1 5.3131 -4.8227 -2.9713 31 1 5.2539 -6.5626 -2.5439 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242583666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = 8.731444 kcal Electronic energy + Delta-G solvation = -20033.220274 eV Core-core repulsion = 16859.800560 eV Total energy + Delta-G solvation = -3173.419715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.63691 -39.04535 -37.11886 -35.78239 -34.18528 -32.39654 -31.30683 -29.46338 -28.67683 -26.19383 -25.40599 -23.52577 -22.43504 -21.84181 -20.86227 -17.79982 -17.45793 -17.27143 -16.80070 -16.12195 -15.78419 -14.97279 -14.73432 -14.19353 -14.06048 -13.67940 -13.37783 -12.85528 -12.68515 -12.47696 -12.31937 -12.15791 -11.65054 -11.50456 -11.36903 -11.00200 -10.64869 -10.55260 -10.21862 -9.88449 -9.58909 -9.21854 -8.40718 -7.73624 -7.56176 -7.40190 -6.63784 -4.78616 1.60222 1.71949 2.47834 2.91153 2.95424 2.97578 3.14260 3.22309 3.75220 3.89713 4.17828 4.54551 4.95174 4.99713 5.16210 5.39633 5.51784 5.60427 5.71382 5.80537 5.94991 5.94999 6.17838 6.36540 6.51769 6.56492 6.74748 6.83778 6.88247 6.97174 6.99131 7.20592 7.57890 7.66186 7.94041 8.28323 8.54815 9.16867 9.73591 9.99315 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.008122 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.849701 B = 3446.796469 C = 4535.344783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.066 3.934 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.403 4.403 8 H 0.097 0.903 9 C 0.225 3.775 10 N -0.453 5.453 11 C 0.089 3.911 12 C -0.117 4.117 13 N -0.402 5.402 14 C -0.035 4.035 15 C 0.049 3.951 16 C -0.089 4.089 17 C -0.118 4.118 18 C -0.118 4.118 19 C 0.018 3.982 20 C 0.044 3.956 21 O -0.294 6.294 22 C 0.210 3.790 23 O -0.317 6.317 24 H 0.280 0.720 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 -1.605 -0.276 7.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.162 4.162 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.433 4.433 8 H 0.115 0.885 9 C 0.101 3.899 10 N -0.169 5.169 11 C -0.082 4.082 12 C -0.278 4.278 13 N -0.114 5.114 14 C -0.181 4.181 15 C 0.047 3.953 16 C -0.108 4.108 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.026 4.026 20 C -0.002 4.002 21 O -0.209 6.209 22 C 0.098 3.902 23 O -0.234 6.234 24 H 0.092 0.908 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.159 0.841 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.388 -1.641 -0.368 7.576 hybrid contribution 0.162 0.471 -0.374 0.622 sum 7.550 -1.170 -0.741 7.676 Atomic orbital electron populations 1.70039 1.07501 1.28905 1.26011 1.26216 0.94993 1.01596 0.93414 0.86300 0.80191 0.79655 0.80481 1.18525 1.19926 1.18286 1.19727 0.95076 0.88983 1.39548 0.88544 1.19193 0.88940 0.92072 0.89733 1.69538 1.07449 1.24703 1.15260 1.23551 0.99945 0.90361 0.94317 1.22570 0.91106 0.97900 1.16258 1.67753 1.08245 1.29258 1.06164 1.19928 0.91726 0.90647 1.15818 1.17453 0.91142 0.92920 0.93789 1.21167 0.94465 0.98637 0.96564 1.20727 0.93236 0.99865 0.99839 1.19907 0.99974 0.97397 0.96432 1.19697 0.90456 0.95759 0.96711 1.19891 0.91691 0.94834 0.93754 1.87413 1.31098 1.61237 1.41194 1.25527 0.72306 1.02904 0.89509 1.87275 1.39312 1.61505 1.35336 0.90837 0.85142 0.85413 0.84065 0.84965 0.85685 0.90652 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.56 11.53 55.56 0.64 -16.92 16 2 C 0.07 1.55 5.49 -17.31 -0.10 1.46 16 3 Si 0.91 17.25 29.56 -169.99 -5.03 12.22 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 7 C -0.40 -10.06 7.87 -37.92 -0.30 -10.35 16 8 H 0.10 2.25 5.77 -52.49 -0.30 1.95 16 9 C 0.23 5.99 6.53 -84.55 -0.55 5.43 16 10 N -0.45 -12.14 8.09 -10.72 -0.09 -12.23 16 11 C 0.09 2.12 11.22 -17.29 -0.19 1.93 16 12 C -0.12 -2.74 11.22 -17.12 -0.19 -2.93 16 13 N -0.40 -10.26 10.40 -8.99 -0.09 -10.36 16 14 C -0.03 -0.88 6.31 -82.13 -0.52 -1.40 16 15 C 0.05 1.11 5.02 -104.80 -0.53 0.58 16 16 C -0.09 -1.71 7.72 -39.15 -0.30 -2.01 16 17 C -0.12 -1.87 10.02 -39.64 -0.40 -2.26 16 18 C -0.12 -1.89 10.05 -39.35 -0.40 -2.28 16 19 C 0.02 0.33 7.14 -39.12 -0.28 0.05 16 20 C 0.04 0.93 6.87 -38.57 -0.27 0.67 16 21 O -0.29 -6.11 11.39 -45.02 -0.51 -6.62 16 22 C 0.21 3.21 8.90 101.05 0.90 4.11 16 23 O -0.32 -5.43 11.41 -45.83 -0.52 -5.95 16 24 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 25 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 26 H 0.13 2.58 8.06 -52.49 -0.42 2.15 16 27 H 0.14 2.68 7.52 -52.48 -0.39 2.29 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 278.16 15.07 4.19 4.19 Total: -1.00 -30.84 278.16 -6.89 -37.73 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -2.37 Total: 4.96 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.12 Total: -7.02 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.46 Total: -39.51 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.04 Total: -12.58 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.84 -6.89 -37.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242583666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.464 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds