Wall clock time and date at job start Mon Mar 30 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86801 * 119.99965 * 2 1 4 4 H 1.48494 * 109.47131 * 239.99619 * 3 2 1 5 5 H 1.48493 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47124 * 119.99945 * 3 2 1 7 7 C 1.40158 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99778 * 179.73072 * 7 2 1 9 9 C 1.40734 * 120.00144 * 359.97438 * 7 2 1 10 10 N 1.33976 * 120.29243 * 8.77071 * 9 7 2 11 11 C 1.31602 * 119.90912 * 180.02562 * 10 9 7 12 12 C 1.39202 * 120.52034 * 359.97438 * 11 10 9 13 13 N 1.31995 * 120.59847 * 0.02562 * 12 11 10 14 14 C 1.32935 * 120.07430 * 359.70879 * 13 12 11 15 15 C 1.47606 * 120.25971 * 180.29688 * 14 13 12 16 16 C 1.39839 * 120.15878 * 233.00628 * 15 14 13 17 17 C 1.37768 * 119.97546 * 179.97438 * 16 15 14 18 18 C 1.38540 * 120.34860 * 359.97438 * 17 16 15 19 19 C 1.38550 * 120.38002 * 0.02562 * 18 17 16 20 20 C 1.39160 * 119.91818 * 359.73869 * 19 18 17 21 21 O 1.36295 * 108.72748 * 179.82208 * 20 19 18 22 22 C 1.43999 * 105.56032 * 343.09246 * 21 20 19 23 23 O 1.36542 * 131.47135 * 179.97438 * 19 18 17 24 24 H 0.96999 * 119.99512 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.74304 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.69966 * 180.02562 * 12 11 10 27 27 H 1.08009 * 120.01423 * 359.97438 * 16 15 14 28 28 H 1.08001 * 119.82331 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.80623 * 179.97438 * 18 17 16 30 30 H 1.08996 * 110.57581 * 268.31696 * 22 21 20 31 31 H 1.09000 * 110.57338 * 145.43069 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.0948 1.6964 -1.2124 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0077 -1.2138 -0.0005 8 1 3.0877 -1.2138 -0.0049 9 6 1.3041 -2.4326 -0.0005 10 7 -0.0240 -2.4462 -0.1764 11 6 -0.6746 -3.5902 -0.1746 12 6 0.0065 -4.7904 0.0085 13 7 1.3147 -4.8006 0.1835 14 6 1.9962 -3.6592 0.1806 15 6 3.4601 -3.6664 0.3695 16 6 4.0448 -2.8688 1.3581 17 6 5.4115 -2.8789 1.5314 18 6 6.2128 -3.6767 0.7309 19 6 5.6489 -4.4726 -0.2530 20 6 4.2694 -4.4766 -0.4365 21 8 3.9661 -5.3283 -1.4564 22 6 5.2034 -5.5434 -2.1610 23 8 6.2109 -5.3301 -1.1547 24 1 -0.4849 0.8401 -0.0004 25 1 -1.7451 -3.5980 -0.3170 26 1 -0.5406 -5.7215 0.0072 27 1 3.4253 -2.2451 1.9855 28 1 5.8606 -2.2616 2.2954 29 1 7.2833 -3.6775 0.8741 30 1 5.3131 -4.8227 -2.9713 31 1 5.2539 -6.5626 -2.5439 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242583666.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:50 Heat of formation + Delta-G solvation = -11.780934 kcal Electronic energy + Delta-G solvation = -20034.109758 eV Core-core repulsion = 16859.800560 eV Total energy + Delta-G solvation = -3174.309198 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.00259 -40.85607 -38.54519 -37.17561 -35.99755 -34.17140 -33.03735 -30.83244 -30.30476 -28.01440 -26.66893 -25.19379 -24.05470 -23.46037 -22.45982 -19.58607 -18.89230 -18.66192 -18.22265 -17.84829 -17.16825 -16.77077 -16.30183 -15.79784 -15.44381 -15.08566 -14.98580 -14.48002 -14.28574 -13.86782 -13.80794 -13.65681 -13.30841 -13.02919 -12.84844 -12.63504 -12.08985 -12.00693 -11.77349 -11.56841 -11.49836 -11.02623 -10.06013 -9.49118 -9.18091 -8.95214 -8.42847 -6.65358 0.09113 0.31318 0.72272 1.14517 1.40953 1.54294 1.56137 1.91305 2.17963 2.64492 2.70908 2.79438 3.50146 3.73181 3.85463 3.92839 4.04012 4.16708 4.29638 4.32165 4.44392 4.48694 4.56888 4.68555 4.88218 5.07547 5.10931 5.23750 5.26242 5.47536 5.57905 5.70232 5.79197 6.10188 6.26248 6.45777 6.69693 7.30785 7.86438 8.25944 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.008122 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.849701 B = 3446.796469 C = 4535.344783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.022 3.978 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.243 1.243 7 C -0.418 4.418 8 H 0.105 0.895 9 C 0.192 3.808 10 N -0.488 5.488 11 C 0.078 3.922 12 C -0.126 4.126 13 N -0.427 5.427 14 C -0.043 4.043 15 C 0.009 3.991 16 C -0.100 4.100 17 C -0.098 4.098 18 C -0.103 4.103 19 C 0.012 3.988 20 C 0.017 3.983 21 O -0.330 6.330 22 C 0.203 3.797 23 O -0.318 6.318 24 H 0.288 0.712 25 H 0.161 0.839 26 H 0.157 0.843 27 H 0.134 0.866 28 H 0.179 0.821 29 H 0.167 0.833 30 H 0.094 0.906 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -0.669 0.134 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.202 4.202 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.166 1.166 7 C -0.449 4.449 8 H 0.123 0.877 9 C 0.068 3.932 10 N -0.205 5.205 11 C -0.092 4.092 12 C -0.287 4.287 13 N -0.140 5.140 14 C -0.190 4.190 15 C 0.007 3.993 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.032 4.032 20 C -0.028 4.028 21 O -0.246 6.246 22 C 0.092 3.908 23 O -0.234 6.234 24 H 0.099 0.901 25 H 0.178 0.822 26 H 0.175 0.825 27 H 0.152 0.848 28 H 0.196 0.804 29 H 0.184 0.816 30 H 0.111 0.889 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.993 -0.743 0.041 10.020 hybrid contribution -0.611 0.077 -0.523 0.808 sum 9.382 -0.666 -0.481 9.418 Atomic orbital electron populations 1.70124 1.09268 1.30337 1.26559 1.27193 0.95745 1.04966 0.92273 0.85175 0.78833 0.74584 0.80912 1.18321 1.19158 1.16642 1.20040 0.95623 0.89361 1.39826 0.87672 1.19667 0.89372 0.93392 0.90791 1.69495 1.08096 1.26143 1.16746 1.24029 1.01344 0.89942 0.93859 1.23062 0.90964 0.99097 1.15573 1.67820 1.09139 1.29778 1.07250 1.20408 0.93549 0.90229 1.14847 1.17648 0.89926 0.95539 0.96233 1.21240 0.96187 0.98324 0.96129 1.21199 0.91484 0.99115 0.99817 1.20462 1.02032 0.95276 0.94395 1.20015 0.89427 0.96286 0.97478 1.20093 0.93056 0.95338 0.94350 1.87345 1.34008 1.61429 1.41820 1.26023 0.70250 1.05655 0.88908 1.87252 1.39512 1.61236 1.35441 0.90142 0.82186 0.82548 0.84825 0.80367 0.81553 0.88879 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.76 11.53 21.86 0.25 -37.50 16 2 C 0.02 1.07 5.49 85.33 0.47 1.54 16 3 Si 0.99 34.68 29.56 68.60 2.03 36.71 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -8.98 7.11 99.48 0.71 -8.28 16 6 H -0.24 -7.88 7.11 99.48 0.71 -7.17 16 7 C -0.42 -21.34 7.87 23.35 0.18 -21.16 16 8 H 0.11 4.98 5.77 -2.91 -0.02 4.96 16 9 C 0.19 10.62 6.53 40.36 0.26 10.88 16 10 N -0.49 -27.14 8.09 -187.83 -1.52 -28.66 16 11 C 0.08 3.83 11.22 84.96 0.95 4.78 16 12 C -0.13 -6.08 11.22 84.90 0.95 -5.13 16 13 N -0.43 -22.62 10.40 -182.36 -1.90 -24.52 16 14 C -0.04 -2.30 6.31 42.38 0.27 -2.03 16 15 C 0.01 0.40 5.02 -19.98 -0.10 0.30 16 16 C -0.10 -3.76 7.72 22.55 0.17 -3.59 16 17 C -0.10 -2.76 10.02 22.23 0.22 -2.54 16 18 C -0.10 -2.90 10.05 22.42 0.23 -2.68 16 19 C 0.01 0.42 7.14 22.57 0.16 0.58 16 20 C 0.02 0.72 6.87 22.93 0.16 0.88 16 21 O -0.33 -13.88 11.39 -73.66 -0.84 -14.72 16 22 C 0.20 5.93 8.90 113.37 1.01 6.94 16 23 O -0.32 -10.20 11.41 -76.54 -0.87 -11.08 16 24 H 0.29 13.09 8.29 -92.71 -0.77 12.32 16 25 H 0.16 6.54 8.06 -2.91 -0.02 6.52 16 26 H 0.16 6.35 8.06 -2.91 -0.02 6.32 16 27 H 0.13 5.12 7.52 -2.91 -0.02 5.10 16 28 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.16 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -70.47 278.16 3.27 -67.20 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 1.18 Total: 23.79 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.94 Total: -11.22 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -3.17 Total: -90.68 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.71 Total: -25.80 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -70.47 3.27 -67.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242583666.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.421 kcal (2) G-P(sol) polarization free energy of solvation -70.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds