Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72557 * 3 2 1 5 5 H 1.48508 * 109.46737 * 359.72484 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72571 * 3 2 1 7 7 C 1.40125 * 120.00113 * 179.72673 * 2 1 3 8 8 H 1.08000 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.41010 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.33665 * 119.12650 * 359.72314 * 9 7 2 11 11 C 1.31560 * 120.83275 * 179.75403 * 10 9 7 12 12 C 1.40505 * 119.08730 * 0.51549 * 11 10 9 13 13 C 1.47789 * 120.79985 * 179.76054 * 12 11 10 14 14 C 1.39778 * 120.15024 * 129.69841 * 13 12 11 15 15 C 1.37803 * 119.97798 * 179.73554 * 14 13 12 16 16 C 1.38529 * 120.33526 * 0.57094 * 15 14 13 17 17 C 1.38581 * 120.36824 * 359.70205 * 16 15 14 18 18 C 1.39124 * 119.91808 * 0.02562 * 17 16 15 19 19 O 1.36320 * 108.72951 * 179.97438 * 18 17 16 20 20 C 1.43994 * 105.49214 * 342.73337 * 19 18 17 21 21 O 1.36535 * 131.46761 * 180.02562 * 17 16 15 22 22 C 1.40508 * 118.40716 * 359.74516 * 12 11 10 23 23 N 1.31558 * 119.08477 * 359.97438 * 22 12 11 24 24 H 0.97000 * 120.00425 * 0.27124 * 1 2 3 25 25 H 1.08003 * 120.45948 * 180.26102 * 11 10 9 26 26 H 1.08007 * 120.01455 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.82779 * 180.25369 * 15 14 13 28 28 H 1.08002 * 119.81553 * 179.72693 * 16 15 14 29 29 H 1.09003 * 110.57682 * 268.53635 * 20 19 18 30 30 H 1.08996 * 110.70690 * 145.70941 * 20 19 18 31 31 H 1.08005 * 120.45911 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0995 1.6936 -1.2091 5 1 1.2756 2.7465 -0.0067 6 1 3.0894 1.6994 1.2158 7 6 2.0073 -1.2135 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3023 -2.4346 0.0111 10 7 -0.0342 -2.4142 0.0161 11 6 -0.7257 -3.5334 0.0163 12 6 -0.0401 -4.7599 0.0221 13 6 -0.7790 -6.0398 0.0278 14 6 -0.4611 -7.0381 -0.8975 15 6 -1.1487 -8.2323 -0.8855 16 6 -2.1637 -8.4460 0.0327 17 6 -2.4944 -7.4639 0.9527 18 6 -1.8049 -6.2555 0.9558 19 8 -2.3120 -5.4647 1.9437 20 6 -3.5888 -6.0397 2.2793 21 8 -3.4357 -7.4311 1.9412 22 6 1.3648 -4.7404 0.0221 23 7 1.9883 -3.5819 0.0161 24 1 -0.4851 0.8400 -0.0040 25 1 -1.8055 -3.5099 0.0161 26 1 0.3263 -6.8754 -1.6187 27 1 -0.8983 -9.0035 -1.5989 28 1 -2.7001 -9.3834 0.0317 29 1 -4.3816 -5.5856 1.6847 30 1 -3.7956 -5.9246 3.3432 31 1 1.9252 -5.6636 0.0260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242587050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = 10.887972 kcal Electronic energy + Delta-G solvation = -19451.208473 eV Core-core repulsion = 16277.882272 eV Total energy + Delta-G solvation = -3173.326201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81943 -38.97523 -37.34499 -35.97766 -33.98284 -32.00417 -31.72144 -29.64748 -28.93308 -26.14065 -25.57016 -23.14841 -22.79751 -22.07390 -20.91747 -18.02001 -17.64695 -17.40771 -16.90776 -16.04084 -15.97623 -15.08342 -14.59129 -14.23827 -14.20293 -13.69192 -13.46605 -12.87272 -12.79846 -12.64113 -12.50228 -12.15971 -11.85260 -11.39138 -11.32423 -11.18510 -10.81305 -10.68946 -10.40492 -9.61159 -9.22148 -9.19680 -8.77080 -7.85305 -7.65830 -7.31293 -6.64789 -4.82822 1.41706 1.48457 2.53434 2.94498 2.98634 3.01594 3.02333 3.10923 3.72888 3.78790 3.94994 4.53575 4.82177 4.85645 5.03857 5.26247 5.42535 5.53171 5.61038 5.72381 5.77783 5.84582 5.87925 6.23755 6.38323 6.41169 6.55507 6.64219 6.78659 6.87361 6.98440 7.25531 7.45307 7.57374 8.03644 8.38032 8.45276 9.01291 9.99149 10.17614 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.004763 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.130704 B = 5876.794799 C = 6498.892163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.062 3.938 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.382 4.382 8 H 0.096 0.904 9 C 0.383 3.617 10 N -0.508 5.508 11 C 0.193 3.807 12 C -0.335 4.335 13 C 0.048 3.952 14 C -0.119 4.119 15 C -0.107 4.107 16 C -0.129 4.129 17 C 0.030 3.970 18 C 0.022 3.978 19 O -0.298 6.298 20 C 0.211 3.789 21 O -0.317 6.317 22 C 0.191 3.809 23 N -0.594 5.594 24 H 0.279 0.721 25 H 0.126 0.874 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -9.131 0.023 10.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.167 4.167 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.415 4.415 8 H 0.114 0.886 9 C 0.150 3.850 10 N -0.224 5.224 11 C 0.016 3.984 12 C -0.345 4.345 13 C 0.045 3.955 14 C -0.137 4.137 15 C -0.126 4.126 16 C -0.147 4.147 17 C -0.014 4.014 18 C -0.023 4.023 19 O -0.214 6.214 20 C 0.099 3.901 21 O -0.234 6.234 22 C 0.016 3.984 23 N -0.312 5.312 24 H 0.090 0.910 25 H 0.143 0.857 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.286 -7.887 0.259 9.498 hybrid contribution -0.543 -0.169 0.228 0.613 sum -5.830 -8.056 0.487 9.956 Atomic orbital electron populations 1.70122 1.07459 1.28694 1.25669 1.26213 0.95098 1.01705 0.93664 0.86136 0.79917 0.79131 0.80281 1.18555 1.19948 1.18566 1.19414 0.95030 0.87848 1.39240 0.88643 1.19941 0.85952 0.90845 0.88283 1.69354 1.08050 1.26509 1.18511 1.22941 0.98775 0.87646 0.89005 1.19589 0.95237 0.92547 1.27176 1.17797 0.92761 0.94379 0.90539 1.21115 1.01152 0.92613 0.98842 1.20746 0.95593 0.97566 0.98664 1.19904 1.01084 0.98523 0.95238 1.19745 0.93274 0.96191 0.92205 1.19968 1.00146 0.89789 0.92376 1.87413 1.32560 1.50619 1.50757 1.25553 0.86616 0.75685 1.02274 1.87303 1.57578 1.27384 1.51110 1.22627 0.89980 0.95886 0.89912 1.68650 1.40582 0.98433 1.23572 0.90974 0.85665 0.84896 0.85117 0.85665 0.90392 0.85756 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.03 11.40 55.56 0.63 -17.40 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 3 Si 0.92 17.97 29.56 -169.99 -5.02 12.94 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 7 C -0.38 -10.27 9.35 -37.82 -0.35 -10.62 16 8 H 0.10 2.44 7.85 -52.49 -0.41 2.03 16 9 C 0.38 10.74 7.35 -158.16 -1.16 9.58 16 10 N -0.51 -14.08 7.82 -12.40 -0.10 -14.18 16 11 C 0.19 4.74 10.68 -16.81 -0.18 4.56 16 12 C -0.34 -7.49 5.52 -104.28 -0.58 -8.07 16 13 C 0.05 0.90 5.53 -104.75 -0.58 0.32 16 14 C -0.12 -1.84 9.56 -39.16 -0.37 -2.21 16 15 C -0.11 -1.40 10.02 -39.63 -0.40 -1.79 16 16 C -0.13 -1.77 10.05 -39.35 -0.40 -2.17 16 17 C 0.03 0.49 7.15 -39.13 -0.28 0.21 16 18 C 0.02 0.40 6.70 -38.59 -0.26 0.14 16 19 O -0.30 -5.49 11.19 -45.11 -0.50 -6.00 16 20 C 0.21 2.85 8.89 101.05 0.90 3.75 16 21 O -0.32 -4.87 11.41 -45.81 -0.52 -5.39 16 22 C 0.19 4.37 10.86 -16.81 -0.18 4.19 16 23 N -0.59 -15.64 10.33 -12.40 -0.13 -15.77 16 24 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 25 H 0.13 2.85 8.06 -52.48 -0.42 2.43 16 26 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 27 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 282.91 15.07 4.26 4.26 Total: -1.00 -31.14 282.91 -7.82 -38.96 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.51 Total: 3.25 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.93 Total: -0.68 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.41 Total: -47.35 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.03 Total: -11.39 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.94 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.14 -7.82 -38.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242587050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.850 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds