Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86805 * 119.99993 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72557 * 3 2 1 5 5 H 1.48508 * 109.46737 * 359.72484 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72571 * 3 2 1 7 7 C 1.40125 * 120.00113 * 179.72673 * 2 1 3 8 8 H 1.08000 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.41010 * 119.99761 * 0.02562 * 7 2 1 10 10 N 1.33665 * 119.12650 * 359.72314 * 9 7 2 11 11 C 1.31560 * 120.83275 * 179.75403 * 10 9 7 12 12 C 1.40505 * 119.08730 * 0.51549 * 11 10 9 13 13 C 1.47789 * 120.79985 * 179.76054 * 12 11 10 14 14 C 1.39778 * 120.15024 * 129.69841 * 13 12 11 15 15 C 1.37803 * 119.97798 * 179.73554 * 14 13 12 16 16 C 1.38529 * 120.33526 * 0.57094 * 15 14 13 17 17 C 1.38581 * 120.36824 * 359.70205 * 16 15 14 18 18 C 1.39124 * 119.91808 * 0.02562 * 17 16 15 19 19 O 1.36320 * 108.72951 * 179.97438 * 18 17 16 20 20 C 1.43994 * 105.49214 * 342.73337 * 19 18 17 21 21 O 1.36535 * 131.46761 * 180.02562 * 17 16 15 22 22 C 1.40508 * 118.40716 * 359.74516 * 12 11 10 23 23 N 1.31558 * 119.08477 * 359.97438 * 22 12 11 24 24 H 0.97000 * 120.00425 * 0.27124 * 1 2 3 25 25 H 1.08003 * 120.45948 * 180.26102 * 11 10 9 26 26 H 1.08007 * 120.01455 * 0.02562 * 14 13 12 27 27 H 1.07997 * 119.82779 * 180.25369 * 15 14 13 28 28 H 1.08002 * 119.81553 * 179.72693 * 16 15 14 29 29 H 1.09003 * 110.57682 * 268.53635 * 20 19 18 30 30 H 1.08996 * 110.70690 * 145.70941 * 20 19 18 31 31 H 1.08005 * 120.45911 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0995 1.6936 -1.2091 5 1 1.2756 2.7465 -0.0067 6 1 3.0894 1.6994 1.2158 7 6 2.0073 -1.2135 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3023 -2.4346 0.0111 10 7 -0.0342 -2.4142 0.0161 11 6 -0.7257 -3.5334 0.0163 12 6 -0.0401 -4.7599 0.0221 13 6 -0.7790 -6.0398 0.0278 14 6 -0.4611 -7.0381 -0.8975 15 6 -1.1487 -8.2323 -0.8855 16 6 -2.1637 -8.4460 0.0327 17 6 -2.4944 -7.4639 0.9527 18 6 -1.8049 -6.2555 0.9558 19 8 -2.3120 -5.4647 1.9437 20 6 -3.5888 -6.0397 2.2793 21 8 -3.4357 -7.4311 1.9412 22 6 1.3648 -4.7404 0.0221 23 7 1.9883 -3.5819 0.0161 24 1 -0.4851 0.8400 -0.0040 25 1 -1.8055 -3.5099 0.0161 26 1 0.3263 -6.8754 -1.6187 27 1 -0.8983 -9.0035 -1.5989 28 1 -2.7001 -9.3834 0.0317 29 1 -4.3816 -5.5856 1.6847 30 1 -3.7956 -5.9246 3.3432 31 1 1.9252 -5.6636 0.0260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242587050.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -8.954682 kcal Electronic energy + Delta-G solvation = -19452.068915 eV Core-core repulsion = 16277.882272 eV Total energy + Delta-G solvation = -3174.186643 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.03118 -40.83366 -38.61891 -37.22881 -35.80375 -33.85716 -33.39974 -30.82938 -30.58009 -27.87862 -26.69540 -24.86296 -24.41782 -23.46835 -22.46889 -19.86302 -18.89165 -18.63651 -18.24533 -17.77779 -17.19347 -16.93975 -16.23084 -15.59956 -15.39539 -15.07694 -14.94313 -14.52351 -14.41878 -14.01548 -13.88183 -13.65391 -13.14961 -13.02586 -12.89647 -12.73420 -12.42026 -11.98671 -11.81722 -11.36587 -11.17662 -11.02843 -10.31521 -9.47411 -9.14331 -8.96970 -8.48914 -6.78287 0.04921 0.27859 0.82348 1.03189 1.38892 1.52610 1.53839 1.91184 2.17429 2.60936 2.64867 2.77690 3.55876 3.83342 3.85474 3.95279 3.96675 4.04585 4.19549 4.28163 4.33209 4.35429 4.45843 4.60685 4.91353 5.03442 5.14218 5.21682 5.30840 5.44763 5.59983 5.64740 5.76007 6.07505 6.24805 6.45407 6.53940 7.10379 8.14203 8.29079 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.004763 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.130704 B = 5876.794799 C = 6498.892163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.021 3.979 3 Si 1.004 2.996 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.423 4.423 8 H 0.095 0.905 9 C 0.354 3.646 10 N -0.540 5.540 11 C 0.172 3.828 12 C -0.313 4.313 13 C 0.009 3.991 14 C -0.115 4.115 15 C -0.090 4.090 16 C -0.113 4.113 17 C 0.018 3.982 18 C 0.001 3.999 19 O -0.333 6.333 20 C 0.204 3.796 21 O -0.321 6.321 22 C 0.178 3.822 23 N -0.617 5.617 24 H 0.287 0.713 25 H 0.133 0.867 26 H 0.145 0.855 27 H 0.178 0.822 28 H 0.160 0.840 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -11.145 -0.494 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.204 4.204 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.457 4.457 8 H 0.113 0.887 9 C 0.119 3.881 10 N -0.257 5.257 11 C -0.003 4.003 12 C -0.323 4.323 13 C 0.007 3.993 14 C -0.133 4.133 15 C -0.108 4.108 16 C -0.132 4.132 17 C -0.026 4.026 18 C -0.044 4.044 19 O -0.250 6.250 20 C 0.093 3.907 21 O -0.238 6.238 22 C 0.006 3.994 23 N -0.337 5.337 24 H 0.098 0.902 25 H 0.150 0.850 26 H 0.163 0.837 27 H 0.195 0.805 28 H 0.178 0.822 29 H 0.115 0.885 30 H 0.172 0.828 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.814 -9.972 -0.256 11.546 hybrid contribution -0.557 0.126 0.400 0.697 sum -6.371 -9.847 0.144 11.729 Atomic orbital electron populations 1.70195 1.09175 1.30186 1.26537 1.27195 0.95912 1.04948 0.92328 0.84945 0.78469 0.73978 0.80404 1.17845 1.18506 1.18123 1.19743 0.95276 0.88937 1.41709 0.88694 1.20359 0.86466 0.91933 0.89299 1.69295 1.08298 1.28125 1.19995 1.23211 0.99220 0.88315 0.89537 1.19852 0.95261 0.93594 1.23587 1.17830 0.94220 0.94014 0.93217 1.21335 1.01456 0.92627 0.97916 1.21228 0.93837 0.97218 0.98487 1.20475 1.00373 0.98860 0.93459 1.20062 0.93399 0.96058 0.93094 1.20181 1.00489 0.91004 0.92695 1.87358 1.34677 1.51867 1.51109 1.26002 0.85282 0.74891 1.04532 1.87280 1.57317 1.28194 1.50986 1.23239 0.90797 0.96188 0.89222 1.68662 1.41185 0.99094 1.24713 0.90174 0.85001 0.83694 0.80511 0.82201 0.88498 0.82759 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.65 11.40 21.85 0.25 -39.40 16 2 C 0.02 1.05 5.50 85.32 0.47 1.52 16 3 Si 1.00 37.45 29.56 68.60 2.03 39.48 16 4 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.42 -23.79 9.35 23.41 0.22 -23.58 16 8 H 0.09 5.10 7.85 -2.91 -0.02 5.07 16 9 C 0.35 20.84 7.35 134.87 0.99 21.83 16 10 N -0.54 -31.46 7.82 -193.16 -1.51 -32.98 16 11 C 0.17 8.81 10.68 85.29 0.91 9.72 16 12 C -0.31 -14.26 5.52 -19.64 -0.11 -14.37 16 13 C 0.01 0.35 5.53 -19.95 -0.11 0.24 16 14 C -0.11 -3.24 9.56 22.54 0.22 -3.02 16 15 C -0.09 -1.90 10.02 22.24 0.22 -1.68 16 16 C -0.11 -2.62 10.05 22.42 0.23 -2.39 16 17 C 0.02 0.54 7.15 22.56 0.16 0.70 16 18 C 0.00 0.02 6.70 22.91 0.15 0.18 16 19 O -0.33 -12.38 11.19 -73.95 -0.83 -13.21 16 20 C 0.20 5.27 8.89 113.37 1.01 6.28 16 21 O -0.32 -9.18 11.41 -76.45 -0.87 -10.06 16 22 C 0.18 8.29 10.86 85.29 0.93 9.21 16 23 N -0.62 -33.66 10.33 -193.16 -2.00 -35.65 16 24 H 0.29 13.67 8.29 -92.71 -0.77 12.90 16 25 H 0.13 6.33 8.06 -2.91 -0.02 6.31 16 26 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 27 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 28 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.17 6.28 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -72.12 282.91 3.53 -68.59 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.17 Total: 18.58 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.28 Total: 4.64 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -3.26 Total: -108.02 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.70 Total: -23.27 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -72.12 3.53 -68.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242587050.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.637 kcal (2) G-P(sol) polarization free energy of solvation -72.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds