Wall clock time and date at job start Mon Mar 30 2020 01:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86800 * 119.99417 * 2 1 4 4 H 1.48503 * 109.47205 * 240.00142 * 3 2 1 5 5 H 1.48500 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46886 * 120.00291 * 3 2 1 7 7 C 1.40219 * 120.00614 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00773 * 179.97438 * 7 2 1 9 9 C 1.40780 * 119.99881 * 359.97438 * 7 2 1 10 10 N 1.33995 * 120.28641 * 352.85158 * 9 7 2 11 11 C 1.31564 * 119.90122 * 180.02562 * 10 9 7 12 12 C 1.39287 * 120.50734 * 359.97438 * 11 10 9 13 13 N 1.31933 * 120.59116 * 0.02562 * 12 11 10 14 14 C 1.32920 * 120.07987 * 359.97438 * 13 12 11 15 15 C 1.47639 * 120.24757 * 179.97438 * 14 13 12 16 16 C 1.39504 * 120.22591 * 94.68451 * 15 14 13 17 17 C 1.37998 * 119.99180 * 179.97438 * 16 15 14 18 18 C 1.38564 * 120.45937 * 0.02562 * 17 16 15 19 19 C 1.38053 * 120.46240 * 359.97438 * 18 17 16 20 20 C 1.39437 * 119.99611 * 359.71990 * 19 18 17 21 21 C 1.47536 * 120.22881 * 180.29793 * 20 19 18 22 22 O 1.21497 * 120.00108 * 174.55427 * 21 20 19 23 23 O 1.34753 * 120.00584 * 354.55935 * 21 20 19 24 24 H 0.96995 * 120.00697 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.74807 * 179.72264 * 11 10 9 26 26 H 1.08002 * 119.70467 * 179.97438 * 12 11 10 27 27 H 1.07995 * 120.00865 * 0.02562 * 16 15 14 28 28 H 1.08001 * 119.77642 * 179.97438 * 17 16 15 29 29 H 1.07991 * 119.77005 * 179.97438 * 18 17 16 30 30 H 1.08002 * 120.00549 * 179.97438 * 19 18 17 31 31 H 0.96697 * 117.00384 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0877 -1.2143 -0.0010 9 6 1.3039 -2.4335 -0.0005 10 7 -0.0282 -2.4449 0.1440 11 6 -0.6782 -3.5887 0.1434 12 6 0.0076 -4.7916 -0.0071 13 7 1.3190 -4.8035 -0.1508 14 6 1.9992 -3.6615 -0.1536 15 6 3.4669 -3.6704 -0.3136 16 6 4.0368 -3.5022 -1.5758 17 6 5.4092 -3.5108 -1.7197 18 6 6.2300 -3.6863 -0.6172 19 6 5.6862 -3.8545 0.6406 20 6 4.3021 -3.8426 0.8089 21 6 3.7156 -4.0152 2.1516 22 8 2.5159 -3.9057 2.3091 23 8 4.5104 -4.2943 3.2033 24 1 -0.4851 0.8399 0.0004 25 1 -1.7513 -3.5952 0.2645 26 1 -0.5390 -5.7231 -0.0053 27 1 3.4041 -3.3644 -2.4401 28 1 5.8467 -3.3807 -2.6985 29 1 7.3026 -3.6917 -0.7426 30 1 6.3329 -3.9911 1.4947 31 1 4.0805 -4.3982 4.0632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242878094.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:14 Heat of formation + Delta-G solvation = -44.059956 kcal Electronic energy + Delta-G solvation = -20200.940496 eV Core-core repulsion = 17025.231574 eV Total energy + Delta-G solvation = -3175.708922 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53877 -40.53727 -39.25768 -36.98958 -35.94077 -34.20268 -33.06129 -32.27323 -30.57617 -27.95920 -25.90159 -24.61365 -23.84126 -22.84072 -21.64042 -19.52933 -18.99998 -18.37498 -17.92276 -17.28007 -16.79763 -16.48503 -16.05547 -15.94493 -15.56860 -15.15055 -14.55528 -14.40386 -14.11026 -13.67442 -13.50879 -13.28864 -13.00016 -12.68327 -12.51153 -12.45577 -12.11476 -12.00113 -11.69685 -11.53936 -11.44458 -10.90554 -9.94357 -9.83056 -9.58889 -9.21067 -8.38836 -6.63160 -0.17943 0.45638 0.65155 1.13772 1.34778 1.48471 1.52170 1.68928 2.14409 2.15571 2.76608 2.89207 3.66161 3.77128 4.02301 4.18133 4.19905 4.24435 4.44592 4.58010 4.61290 4.68057 4.82791 5.02199 5.10645 5.14894 5.25341 5.41476 5.53800 5.61936 5.65164 5.81692 6.01311 6.08929 6.50471 6.74060 7.06596 7.34836 7.93540 8.29690 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.009380 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.695473 B = 2984.461258 C = 3705.983584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.022 3.978 3 Si 0.984 3.016 4 H -0.247 1.247 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.433 4.433 8 H 0.089 0.911 9 C 0.209 3.791 10 N -0.490 5.490 11 C 0.067 3.933 12 C -0.122 4.122 13 N -0.431 5.431 14 C -0.007 4.007 15 C 0.058 3.942 16 C -0.135 4.135 17 C -0.070 4.070 18 C -0.132 4.132 19 C -0.059 4.059 20 C -0.149 4.149 21 C 0.516 3.484 22 O -0.533 6.533 23 O -0.504 6.504 24 H 0.285 0.715 25 H 0.154 0.846 26 H 0.155 0.845 27 H 0.118 0.882 28 H 0.167 0.833 29 H 0.175 0.825 30 H 0.160 0.840 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.775 -2.031 -0.360 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.201 4.201 3 Si 0.803 3.197 4 H -0.170 1.170 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.107 0.893 9 C 0.083 3.917 10 N -0.207 5.207 11 C -0.101 4.101 12 C -0.282 4.282 13 N -0.144 5.144 14 C -0.156 4.156 15 C 0.056 3.944 16 C -0.153 4.153 17 C -0.087 4.087 18 C -0.149 4.149 19 C -0.077 4.077 20 C -0.151 4.151 21 C 0.361 3.639 22 O -0.423 6.423 23 O -0.317 6.317 24 H 0.096 0.904 25 H 0.171 0.829 26 H 0.172 0.828 27 H 0.136 0.864 28 H 0.184 0.816 29 H 0.193 0.807 30 H 0.177 0.823 31 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 12.368 -1.830 -0.679 12.521 hybrid contribution -1.119 0.322 0.884 1.462 sum 11.249 -1.508 0.205 11.352 Atomic orbital electron populations 1.70118 1.09137 1.29959 1.27753 1.27139 0.95779 1.04862 0.92316 0.85228 0.78895 0.74949 0.80632 1.17042 1.18766 1.18403 1.19757 0.94695 0.89946 1.42006 0.89274 1.19519 0.89178 0.93199 0.89787 1.69414 1.08296 1.26208 1.16780 1.23917 1.01114 0.90225 0.94879 1.22931 0.90994 0.98672 1.15557 1.67730 1.09046 1.29405 1.08203 1.20309 0.93398 0.90109 1.11812 1.18473 0.89944 0.92786 0.93154 1.21337 0.96729 1.02110 0.95168 1.21712 0.91478 0.94311 1.01218 1.21611 1.02014 1.00439 0.90867 1.21649 0.91495 0.94594 0.99968 1.19312 0.95362 1.11469 0.88928 1.21201 0.84187 0.72386 0.86157 1.90972 1.18077 1.47537 1.85735 1.84476 1.43757 1.83039 1.20469 0.90405 0.82901 0.82803 0.86417 0.81561 0.80729 0.82286 0.71442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.76 11.51 21.87 0.25 -40.51 16 2 C 0.02 1.14 5.50 85.35 0.47 1.61 16 3 Si 0.98 37.67 29.56 68.60 2.03 39.69 16 4 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.43 -23.88 8.77 23.37 0.21 -23.68 16 8 H 0.09 4.66 6.90 -2.91 -0.02 4.64 16 9 C 0.21 12.14 6.25 40.35 0.25 12.39 16 10 N -0.49 -29.03 8.08 -187.79 -1.52 -30.55 16 11 C 0.07 3.51 11.22 84.99 0.95 4.46 16 12 C -0.12 -6.18 11.22 84.93 0.95 -5.23 16 13 N -0.43 -23.09 10.26 -182.36 -1.87 -24.96 16 14 C -0.01 -0.39 3.82 42.38 0.16 -0.23 16 15 C 0.06 2.59 4.12 -19.82 -0.08 2.51 16 16 C -0.13 -4.91 9.78 22.52 0.22 -4.69 16 17 C -0.07 -1.76 10.02 22.29 0.22 -1.53 16 18 C -0.13 -2.91 10.03 22.30 0.22 -2.69 16 19 C -0.06 -1.65 9.61 22.51 0.22 -1.43 16 20 C -0.15 -5.83 5.90 -19.87 -0.12 -5.95 16 21 C 0.52 21.30 8.23 70.27 0.58 21.88 16 22 O -0.53 -27.57 14.83 19.85 0.29 -27.28 16 23 O -0.50 -14.81 12.69 -56.63 -0.72 -15.53 16 24 H 0.29 13.91 8.29 -92.71 -0.77 13.14 16 25 H 0.15 6.84 8.06 -2.91 -0.02 6.82 16 26 H 0.15 6.57 8.06 -2.91 -0.02 6.54 16 27 H 0.12 4.38 8.06 -2.91 -0.02 4.35 16 28 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 29 H 0.18 2.19 8.06 -2.92 -0.02 2.17 16 30 H 0.16 3.47 7.62 -2.91 -0.02 3.44 16 31 H 0.43 8.81 9.11 -74.06 -0.67 8.14 16 Total: -1.00 -78.87 284.93 3.24 -75.62 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.52 Total: 26.09 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.26 Total: -2.57 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -3.14 Total: -96.02 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.42 Total: -42.81 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.69 kcal Total: -78.87 3.24 -75.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242878094.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.564 kcal (2) G-P(sol) polarization free energy of solvation -78.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds