Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30719 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47606 * 89.99574 * 3 2 1 5 5 H 1.48500 * 109.47416 * 209.99853 * 3 2 1 6 6 H 1.48501 * 109.46906 * 329.99669 * 3 2 1 7 7 C 1.40052 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99681 * 15.23812 * 7 2 1 9 9 C 1.41348 * 120.00450 * 195.24271 * 7 2 1 10 10 C 1.40901 * 120.14385 * 189.25548 * 9 7 2 11 11 N 1.31849 * 119.96395 * 179.77209 * 10 9 7 12 12 C 1.32219 * 120.28503 * 0.48435 * 11 10 9 13 13 C 1.40007 * 120.29075 * 359.76877 * 12 11 10 14 14 C 1.48173 * 119.98723 * 179.97438 * 13 12 11 15 15 C 1.39193 * 120.20007 * 67.80271 * 14 13 12 16 16 C 1.38090 * 120.01910 * 179.70358 * 15 14 13 17 17 C 1.38489 * 120.42831 * 0.59815 * 16 15 14 18 18 C 1.37983 * 120.41270 * 359.67905 * 17 16 15 19 19 C 1.39501 * 119.96754 * 0.02562 * 18 17 16 20 20 C 1.47577 * 120.21366 * 180.02562 * 19 18 17 21 21 O 1.21487 * 119.99958 * 174.89156 * 20 19 18 22 22 O 1.34742 * 119.99908 * 354.89670 * 20 19 18 23 23 N 1.32606 * 120.02990 * 359.97438 * 13 12 11 24 24 H 0.97000 * 119.99968 * 174.91796 * 1 2 3 25 25 H 1.08003 * 120.02057 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.85360 * 179.75106 * 12 11 10 27 27 H 1.08005 * 119.99379 * 359.97438 * 15 14 13 28 28 H 1.07993 * 119.78157 * 180.32166 * 16 15 14 29 29 H 1.08001 * 119.79186 * 179.70244 * 17 16 15 30 30 H 1.07998 * 120.01585 * 180.02562 * 18 17 16 31 31 H 0.96703 * 116.99512 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0465 1.4000 5 1 3.5388 1.4401 -0.7000 6 1 1.4387 2.6526 -0.7001 7 6 2.0075 -1.2129 0.0005 8 1 1.4959 -2.1319 -0.2449 9 6 3.3837 -1.2343 0.3224 10 6 4.1355 -2.4115 0.1368 11 7 5.4200 -2.4262 0.4339 12 6 6.0055 -1.3428 0.9151 13 6 5.2681 -0.1685 1.1090 14 6 5.9310 1.0416 1.6491 15 6 6.8857 1.7141 0.8917 16 6 7.4967 2.8450 1.3962 17 6 7.1754 3.3111 2.6602 18 6 6.2358 2.6550 3.4286 19 6 5.6036 1.5144 2.9330 20 6 4.5974 0.8088 3.7501 21 8 3.9824 -0.1279 3.2808 22 8 4.3608 1.2035 5.0165 23 7 3.9767 -0.1388 0.8094 24 1 -0.4850 -0.8367 -0.0744 25 1 3.6608 -3.3000 -0.2525 26 1 7.0571 -1.3638 1.1599 27 1 7.1455 1.3538 -0.0928 28 1 8.2331 3.3667 0.8032 29 1 7.6631 4.1938 3.0466 30 1 5.9898 3.0243 4.4132 31 1 3.6924 0.7108 5.5122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242879620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = -31.021187 kcal Electronic energy + Delta-G solvation = -20220.674785 eV Core-core repulsion = 17045.531267 eV Total energy + Delta-G solvation = -3175.143518 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29304 -39.10284 -38.22381 -35.68775 -34.18100 -32.95668 -31.73939 -31.27438 -29.27493 -25.89960 -24.68636 -23.41240 -22.32040 -21.31405 -20.33305 -18.52568 -17.78242 -17.11579 -16.19048 -15.85208 -15.51823 -15.21166 -14.92313 -14.52782 -14.04808 -13.72427 -13.20468 -12.90997 -12.81847 -12.52976 -12.40698 -11.79360 -11.44525 -11.26465 -11.13839 -11.04880 -10.86292 -10.29106 -9.97991 -9.56500 -9.23040 -9.15318 -8.95309 -8.79672 -7.99939 -7.72596 -7.20237 -4.86567 0.84087 1.34407 2.26658 2.70171 2.91032 3.28441 3.47226 3.55072 3.83253 3.90644 4.28741 4.52103 4.73553 4.92895 4.98563 5.16540 5.38518 5.54579 5.60864 5.71006 5.82813 6.02302 6.10067 6.19109 6.33076 6.43713 6.57436 6.68629 6.80545 6.87152 6.89518 7.32717 7.35461 7.92363 8.09901 8.28490 8.45877 8.90211 9.38170 9.87165 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.008790 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.514186 B = 3184.523026 C = 3492.646359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.051 3.949 3 Si 1.136 2.864 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.323 1.323 7 C -0.458 4.458 8 H 0.088 0.912 9 C 0.210 3.790 10 C -0.044 4.044 11 N -0.420 5.420 12 C -0.101 4.101 13 C 0.164 3.836 14 C 0.043 3.957 15 C -0.113 4.113 16 C -0.087 4.087 17 C -0.139 4.139 18 C -0.067 4.067 19 C -0.104 4.104 20 C 0.507 3.493 21 O -0.464 6.464 22 O -0.523 6.523 23 N -0.498 5.498 24 H 0.287 0.713 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.695 7.339 5.666 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.172 4.172 3 Si 0.968 3.032 4 H -0.212 1.212 5 H -0.206 1.206 6 H -0.255 1.255 7 C -0.490 4.490 8 H 0.106 0.894 9 C 0.084 3.916 10 C -0.216 4.216 11 N -0.131 5.131 12 C -0.257 4.257 13 C 0.018 3.982 14 C 0.041 3.959 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.157 4.157 18 C -0.085 4.085 19 C -0.106 4.106 20 C 0.349 3.651 21 O -0.348 6.348 22 O -0.336 6.336 23 N -0.219 5.219 24 H 0.098 0.902 25 H 0.155 0.845 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.496 8.783 5.364 14.700 hybrid contribution -0.516 -2.230 0.426 2.329 sum 9.980 6.553 5.791 13.269 Atomic orbital electron populations 1.70590 1.08219 1.33228 1.29442 1.27636 0.95221 1.05913 0.88432 0.82239 0.72750 0.70245 0.77925 1.21186 1.20563 1.25481 1.20697 0.92571 0.97101 1.38642 0.89382 1.19292 0.94365 0.88301 0.89601 1.23132 0.90410 0.99159 1.08856 1.67666 1.11440 1.27562 1.06405 1.22279 0.99475 0.90270 1.13709 1.19982 0.91239 0.92049 0.94901 1.18726 0.93143 0.92714 0.91279 1.21189 0.96280 0.95592 1.00146 1.21298 0.98372 0.95312 0.95482 1.21125 0.98969 1.00726 0.94878 1.21365 0.94193 0.93048 0.99869 1.19062 0.99140 0.98099 0.94322 1.20819 0.82024 0.82346 0.79921 1.91088 1.46176 1.26737 1.70813 1.84499 1.60373 1.61966 1.26724 1.67621 1.08011 1.28739 1.17488 0.90190 0.84492 0.85117 0.84759 0.85202 0.85286 0.84505 0.73216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.60 13.65 55.55 0.76 -20.84 16 2 C 0.05 1.41 5.51 -17.35 -0.10 1.31 16 3 Si 1.14 28.68 25.96 -169.99 -4.41 24.27 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 6 H -0.32 -7.86 7.11 56.52 0.40 -7.46 16 7 C -0.46 -12.57 9.54 -37.72 -0.36 -12.93 16 8 H 0.09 2.36 8.06 -52.48 -0.42 1.94 16 9 C 0.21 5.67 6.26 -84.84 -0.53 5.14 16 10 C -0.04 -1.12 10.98 -16.54 -0.18 -1.30 16 11 N -0.42 -10.29 10.47 -12.04 -0.13 -10.41 16 12 C -0.10 -2.30 10.95 -16.72 -0.18 -2.49 16 13 C 0.16 3.83 4.43 -82.79 -0.37 3.47 16 14 C 0.04 0.84 5.53 -104.54 -0.58 0.26 16 15 C -0.11 -1.74 9.75 -39.28 -0.38 -2.12 16 16 C -0.09 -1.02 10.03 -39.54 -0.40 -1.42 16 17 C -0.14 -1.57 10.02 -39.58 -0.40 -1.97 16 18 C -0.07 -0.91 9.61 -39.20 -0.38 -1.29 16 19 C -0.10 -1.88 5.90 -104.70 -0.62 -2.49 16 20 C 0.51 9.83 8.23 34.54 0.28 10.12 16 21 O -0.46 -11.13 13.96 -19.26 -0.27 -11.40 16 22 O -0.52 -7.62 12.69 -40.61 -0.52 -8.14 16 23 N -0.50 -13.09 3.42 -7.52 -0.03 -13.12 16 24 H 0.29 7.40 8.73 -40.82 -0.36 7.05 16 25 H 0.14 3.16 8.06 -52.48 -0.42 2.73 16 26 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 27 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.14 1.57 7.62 -52.49 -0.40 1.17 16 31 H 0.41 4.32 9.11 45.56 0.42 4.74 16 LS Contribution 281.43 15.07 4.24 4.24 Total: -1.00 -33.37 281.43 -6.24 -39.61 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -1.71 Total: 1.49 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.18 Total: -5.70 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.61 Total: -44.38 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.78 Total: -19.54 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: -4.41 Total: 24.27 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.37 -6.24 -39.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242879620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.587 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds