Wall clock time and date at job start Mon Mar 30 2020 01:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30719 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48497 * 109.47606 * 89.99574 * 3 2 1 5 5 H 1.48500 * 109.47416 * 209.99853 * 3 2 1 6 6 H 1.48501 * 109.46906 * 329.99669 * 3 2 1 7 7 C 1.40052 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99681 * 15.23812 * 7 2 1 9 9 C 1.41348 * 120.00450 * 195.24271 * 7 2 1 10 10 C 1.40901 * 120.14385 * 189.25548 * 9 7 2 11 11 N 1.31849 * 119.96395 * 179.77209 * 10 9 7 12 12 C 1.32219 * 120.28503 * 0.48435 * 11 10 9 13 13 C 1.40007 * 120.29075 * 359.76877 * 12 11 10 14 14 C 1.48173 * 119.98723 * 179.97438 * 13 12 11 15 15 C 1.39193 * 120.20007 * 67.80271 * 14 13 12 16 16 C 1.38090 * 120.01910 * 179.70358 * 15 14 13 17 17 C 1.38489 * 120.42831 * 0.59815 * 16 15 14 18 18 C 1.37983 * 120.41270 * 359.67905 * 17 16 15 19 19 C 1.39501 * 119.96754 * 0.02562 * 18 17 16 20 20 C 1.47577 * 120.21366 * 180.02562 * 19 18 17 21 21 O 1.21487 * 119.99958 * 174.89156 * 20 19 18 22 22 O 1.34742 * 119.99908 * 354.89670 * 20 19 18 23 23 N 1.32606 * 120.02990 * 359.97438 * 13 12 11 24 24 H 0.97000 * 119.99968 * 174.91796 * 1 2 3 25 25 H 1.08003 * 120.02057 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.85360 * 179.75106 * 12 11 10 27 27 H 1.08005 * 119.99379 * 359.97438 * 15 14 13 28 28 H 1.07993 * 119.78157 * 180.32166 * 16 15 14 29 29 H 1.08001 * 119.79186 * 179.70244 * 17 16 15 30 30 H 1.07998 * 120.01585 * 180.02562 * 18 17 16 31 31 H 0.96703 * 116.99512 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0465 1.4000 5 1 3.5388 1.4401 -0.7000 6 1 1.4387 2.6526 -0.7001 7 6 2.0075 -1.2129 0.0005 8 1 1.4959 -2.1319 -0.2449 9 6 3.3837 -1.2343 0.3224 10 6 4.1355 -2.4115 0.1368 11 7 5.4200 -2.4262 0.4339 12 6 6.0055 -1.3428 0.9151 13 6 5.2681 -0.1685 1.1090 14 6 5.9310 1.0416 1.6491 15 6 6.8857 1.7141 0.8917 16 6 7.4967 2.8450 1.3962 17 6 7.1754 3.3111 2.6602 18 6 6.2358 2.6550 3.4286 19 6 5.6036 1.5144 2.9330 20 6 4.5974 0.8088 3.7501 21 8 3.9824 -0.1279 3.2808 22 8 4.3608 1.2035 5.0165 23 7 3.9767 -0.1388 0.8094 24 1 -0.4850 -0.8367 -0.0744 25 1 3.6608 -3.3000 -0.2525 26 1 7.0571 -1.3638 1.1599 27 1 7.1455 1.3538 -0.0928 28 1 8.2331 3.3667 0.8032 29 1 7.6631 4.1938 3.0466 30 1 5.9898 3.0243 4.4132 31 1 3.6924 0.7108 5.5122 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242879620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:16 Heat of formation + Delta-G solvation = -54.440055 kcal Electronic energy + Delta-G solvation = -20221.690303 eV Core-core repulsion = 17045.531267 eV Total energy + Delta-G solvation = -3176.159036 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76371 -40.83329 -39.46192 -37.08491 -36.18993 -34.69954 -33.46849 -32.39730 -30.82602 -27.83165 -26.10815 -24.85856 -24.01090 -22.80999 -21.69268 -20.56209 -19.07648 -18.48348 -17.95059 -17.53639 -17.15879 -16.63721 -16.16291 -16.01648 -15.57069 -15.32792 -14.87881 -14.70617 -14.27094 -14.18047 -13.66721 -13.41022 -13.17043 -12.87109 -12.72547 -12.54943 -12.30722 -11.96825 -11.86810 -11.50583 -11.23418 -10.98492 -10.20339 -10.05216 -9.90839 -9.59620 -9.17480 -6.92698 -0.38248 0.17478 0.45951 0.76842 1.42244 1.53266 1.60142 1.83361 2.04687 2.29061 2.51274 2.74994 3.27563 3.47435 3.85532 3.88072 4.10272 4.11743 4.20277 4.38092 4.47083 4.49568 4.66978 4.85168 4.94594 5.01390 5.26430 5.27826 5.40254 5.43395 5.46141 5.57462 5.86205 5.88678 6.11840 6.43350 6.95745 6.97347 7.44210 7.80778 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.008790 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.514186 B = 3184.523026 C = 3492.646359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.027 3.973 3 Si 1.169 2.831 4 H -0.296 1.296 5 H -0.282 1.282 6 H -0.310 1.310 7 C -0.490 4.490 8 H 0.079 0.921 9 C 0.196 3.804 10 C -0.067 4.067 11 N -0.426 5.426 12 C -0.092 4.092 13 C 0.164 3.836 14 C -0.002 4.002 15 C -0.120 4.120 16 C -0.067 4.067 17 C -0.118 4.118 18 C -0.060 4.060 19 C -0.135 4.135 20 C 0.506 3.494 21 O -0.527 6.527 22 O -0.504 6.504 23 N -0.512 5.512 24 H 0.287 0.713 25 H 0.149 0.851 26 H 0.165 0.835 27 H 0.139 0.861 28 H 0.176 0.824 29 H 0.179 0.821 30 H 0.160 0.840 31 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 10.376 6.623 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.193 4.193 3 Si 1.000 3.000 4 H -0.224 1.224 5 H -0.210 1.210 6 H -0.241 1.241 7 C -0.523 4.523 8 H 0.097 0.903 9 C 0.070 3.930 10 C -0.235 4.235 11 N -0.137 5.137 12 C -0.251 4.251 13 C 0.019 3.981 14 C -0.003 4.003 15 C -0.138 4.138 16 C -0.084 4.084 17 C -0.135 4.135 18 C -0.078 4.078 19 C -0.137 4.137 20 C 0.351 3.649 21 O -0.416 6.416 22 O -0.318 6.318 23 N -0.233 5.233 24 H 0.098 0.902 25 H 0.166 0.834 26 H 0.182 0.818 27 H 0.157 0.843 28 H 0.194 0.806 29 H 0.196 0.804 30 H 0.177 0.823 31 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 13.885 11.814 6.337 19.300 hybrid contribution -1.256 -3.081 0.298 3.341 sum 12.629 8.732 6.634 16.726 Atomic orbital electron populations 1.70597 1.08290 1.33264 1.31414 1.28245 0.95544 1.07337 0.88147 0.81807 0.72085 0.69005 0.77105 1.22414 1.20963 1.24149 1.20681 0.93320 0.97023 1.41258 0.90332 1.19486 0.94546 0.89391 0.89619 1.23267 0.90896 0.99322 1.10013 1.67717 1.11004 1.28395 1.06620 1.22974 1.00953 0.89754 1.11370 1.20664 0.90231 0.94147 0.93075 1.18761 0.95669 0.92986 0.92919 1.21390 0.95641 0.96652 1.00164 1.21821 0.97499 0.93296 0.95832 1.21726 0.96872 1.00981 0.93930 1.21702 0.93764 0.91258 1.01057 1.19208 1.00251 1.00065 0.94164 1.21350 0.81460 0.81408 0.80717 1.91064 1.48740 1.29606 1.72238 1.84450 1.60703 1.61559 1.25054 1.67601 1.09759 1.28566 1.17372 0.90221 0.83407 0.81801 0.84292 0.80648 0.80396 0.82258 0.71298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.83 13.65 21.84 0.30 -45.53 16 2 C 0.03 1.53 5.51 85.30 0.47 2.00 16 3 Si 1.17 59.51 25.96 68.60 1.78 61.29 16 4 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 5 H -0.28 -14.29 6.52 99.48 0.65 -13.64 16 6 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 7 C -0.49 -28.28 9.54 23.48 0.22 -28.06 16 8 H 0.08 4.50 8.06 -2.91 -0.02 4.47 16 9 C 0.20 10.99 6.26 40.27 0.25 11.24 16 10 C -0.07 -3.48 10.98 85.34 0.94 -2.55 16 11 N -0.43 -20.98 10.47 -192.01 -2.01 -22.99 16 12 C -0.09 -4.18 10.95 85.06 0.93 -3.25 16 13 C 0.16 7.67 4.43 42.10 0.19 7.85 16 14 C 0.00 -0.06 5.53 -19.81 -0.11 -0.17 16 15 C -0.12 -3.26 9.75 22.46 0.22 -3.04 16 16 C -0.07 -1.17 10.03 22.29 0.22 -0.95 16 17 C -0.12 -1.88 10.02 22.27 0.22 -1.66 16 18 C -0.06 -1.37 9.61 22.51 0.22 -1.15 16 19 C -0.14 -4.59 5.90 -19.91 -0.12 -4.71 16 20 C 0.51 19.45 8.23 70.29 0.58 20.03 16 21 O -0.53 -26.04 13.96 19.88 0.28 -25.77 16 22 O -0.50 -13.99 12.69 -56.52 -0.72 -14.71 16 23 N -0.51 -27.48 3.42 -177.71 -0.61 -28.09 16 24 H 0.29 15.50 8.73 -92.71 -0.81 14.69 16 25 H 0.15 7.12 8.06 -2.91 -0.02 7.10 16 26 H 0.16 6.18 8.06 -2.91 -0.02 6.15 16 27 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 28 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.16 2.86 7.62 -2.91 -0.02 2.84 16 31 H 0.43 8.61 9.11 -74.06 -0.67 7.94 16 Total: -1.00 -76.94 281.43 3.67 -73.27 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.42 Total: 6.94 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.23 Total: -4.41 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.32 Total: -96.61 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.44 Total: -40.48 kcal Atomic # 14 Polarization: 59.51 SS G_CDS: 1.78 Total: 61.29 kcal Total: -76.94 3.67 -73.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242879620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.833 kcal (2) G-P(sol) polarization free energy of solvation -76.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds