Wall clock time and date at job start Mon Mar 30 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31088 * 1 3 3 Si 1.86796 * 120.00666 * 2 1 4 4 H 1.48499 * 109.46982 * 269.99517 * 3 2 1 5 5 H 1.48504 * 109.46948 * 29.99307 * 3 2 1 6 6 H 1.48495 * 109.47491 * 149.98944 * 3 2 1 7 7 C 1.39671 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.40989 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.39022 * 126.93145 * 8.73894 * 9 7 2 11 11 N 1.35566 * 109.23500 * 180.33022 * 10 9 7 12 12 H 0.96999 * 124.70905 * 179.78341 * 11 10 9 13 13 C 1.38185 * 110.58678 * 359.74033 * 11 10 9 14 14 C 1.39170 * 132.73348 * 180.02562 * 13 11 10 15 15 C 1.38046 * 120.29310 * 179.97438 * 14 13 11 16 16 C 1.38285 * 120.80240 * 359.97438 * 15 14 13 17 17 C 1.39376 * 120.07676 * 359.97328 * 16 15 14 18 18 C 1.47615 * 120.30179 * 180.02562 * 17 16 15 19 19 N 1.30325 * 125.47007 * 123.96508 * 18 17 16 20 20 C 1.31257 * 117.02771 * 179.97438 * 19 18 17 21 21 C 1.33781 * 115.85330 * 359.97438 * 20 19 18 22 22 S 1.76173 * 125.47451 * 303.65081 * 18 17 16 23 23 C 1.40212 * 107.88392 * 0.02562 * 13 11 10 24 24 H 0.97004 * 119.99248 * 0.02562 * 1 2 3 25 25 H 1.08004 * 125.38261 * 0.09351 * 10 9 7 26 26 H 1.08007 * 119.85316 * 359.97438 * 14 13 11 27 27 H 1.08003 * 119.59839 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.95939 * 180.02562 * 16 15 14 29 29 H 1.08000 * 122.07562 * 180.02562 * 20 19 18 30 30 H 1.08003 * 125.89127 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6176 0.0000 4 1 2.4927 2.0462 -1.4001 5 1 1.4425 2.6527 0.6999 6 1 3.5424 1.4400 0.7002 7 6 2.0092 -1.2096 0.0005 8 1 3.0891 -1.2097 0.0010 9 6 1.3041 -2.4306 0.0005 10 6 -0.0647 -2.6047 -0.1688 11 7 -0.3589 -3.9262 -0.0987 12 1 -1.2503 -4.2989 -0.1844 13 6 0.7875 -4.6687 0.1108 14 6 1.0156 -6.0343 0.2518 15 6 2.2956 -6.5091 0.4563 16 6 3.3703 -5.6414 0.5242 17 6 3.1699 -4.2692 0.3851 18 6 4.3136 -3.3385 0.4562 19 7 4.6447 -2.4758 -0.4628 20 6 5.6966 -1.7270 -0.2266 21 6 6.3125 -1.9381 0.9421 22 16 5.4455 -3.2103 1.8001 23 6 1.8698 -3.7799 0.1790 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7811 -1.8121 -0.3270 26 1 0.1874 -6.7258 0.2010 27 1 2.4599 -7.5711 0.5638 28 1 4.3661 -6.0277 0.6843 29 1 6.0428 -0.9857 -0.9316 30 1 7.1877 -1.4162 1.2999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242897814.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:27 Heat of formation + Delta-G solvation = 102.295343 kcal Electronic energy + Delta-G solvation = -17612.434809 eV Core-core repulsion = 14885.825200 eV Total energy + Delta-G solvation = -2726.609609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.84836 -38.69534 -35.86327 -33.49720 -31.63827 -29.37019 -28.44441 -27.72457 -25.08711 -24.24888 -21.68580 -20.76785 -19.70088 -19.04455 -17.81071 -16.54553 -15.86952 -15.41494 -14.94976 -14.45270 -14.30293 -13.79487 -13.42544 -13.06918 -12.94106 -12.59930 -12.50492 -11.53663 -11.18487 -11.11003 -11.05466 -10.93250 -10.65306 -10.56695 -9.77022 -9.75094 -9.40747 -9.03252 -8.80455 -8.54852 -8.03187 -7.14705 -6.60140 -6.44774 -3.92752 1.06282 1.63465 2.14910 2.36321 2.55444 3.11537 3.19369 3.24407 3.51657 4.13576 4.20803 4.49538 4.61372 4.87904 5.53667 5.56068 5.63653 5.66505 5.84109 5.96773 6.04232 6.34089 6.52223 6.57066 6.79028 7.04339 7.13705 7.27174 7.43307 7.51526 7.83041 7.98506 8.33984 8.37988 8.70899 9.05133 9.18760 9.22565 10.54858 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.011108 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.375337 B = 2519.996702 C = 4361.124139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.053 3.947 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.408 4.408 8 H 0.088 0.912 9 C 0.022 3.978 10 C -0.086 4.086 11 N -0.588 5.588 12 H 0.396 0.604 13 C 0.081 3.919 14 C -0.131 4.131 15 C -0.121 4.121 16 C -0.153 4.153 17 C 0.015 3.985 18 C 0.166 3.834 19 N -0.443 5.443 20 C 0.044 3.956 21 C -0.268 4.268 22 S 0.043 5.957 23 C -0.088 4.088 24 H 0.271 0.729 25 H 0.191 0.809 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.168 0.832 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 -5.893 1.949 8.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.156 4.156 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.441 4.441 8 H 0.106 0.894 9 C 0.017 3.983 10 C -0.211 4.211 11 N -0.189 5.189 12 H 0.229 0.771 13 C -0.031 4.031 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.176 4.176 17 C 0.011 3.989 18 C -0.110 4.110 19 N -0.155 5.155 20 C -0.108 4.108 21 C -0.407 4.407 22 S 0.300 5.700 23 C -0.098 4.098 24 H 0.082 0.918 25 H 0.207 0.793 26 H 0.124 0.876 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.185 0.815 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.276 -6.010 2.448 8.363 hybrid contribution 0.290 1.463 -0.541 1.587 sum 5.566 -4.547 1.908 7.436 Atomic orbital electron populations 1.69514 1.07075 1.27668 1.42591 1.25634 0.94765 1.00548 0.94654 0.86260 0.80109 0.81245 0.78810 1.19867 1.20740 1.19143 1.19154 0.95087 0.88636 1.41184 0.89434 1.18058 0.90617 0.89293 1.00375 1.23315 0.98608 0.82014 1.17162 1.41536 1.06168 1.07077 1.64151 0.77078 1.18105 0.87471 0.91971 1.05515 1.19948 0.96908 0.91675 1.06869 1.20256 0.91690 0.98184 1.03891 1.20561 0.98346 0.91187 1.07532 1.17080 0.88343 0.90273 1.03238 1.25881 0.97548 0.97202 0.90371 1.66758 1.13587 1.05153 1.29967 1.21702 0.92285 1.00171 0.96637 1.26801 1.07938 1.06053 0.99917 1.84816 1.24899 1.34866 1.25454 1.19275 0.90102 0.95286 1.05139 0.91838 0.79310 0.87646 0.86811 0.87161 0.81544 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.16 10.41 55.54 0.58 -21.58 16 2 C 0.05 1.41 5.49 -17.33 -0.10 1.31 16 3 Si 0.91 20.46 29.56 -169.99 -5.02 15.43 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.41 -11.30 8.96 -38.01 -0.34 -11.64 16 8 H 0.09 2.39 4.47 -52.49 -0.23 2.15 16 9 C 0.02 0.59 6.08 -104.84 -0.64 -0.05 16 10 C -0.09 -2.18 10.86 -15.61 -0.17 -2.35 16 11 N -0.59 -12.54 5.99 -9.81 -0.06 -12.60 16 12 H 0.40 6.79 8.96 -40.82 -0.37 6.43 16 13 C 0.08 1.77 7.23 -83.91 -0.61 1.16 16 14 C -0.13 -2.39 10.06 -39.31 -0.40 -2.78 16 15 C -0.12 -2.05 9.99 -39.63 -0.40 -2.45 16 16 C -0.15 -2.84 9.78 -39.14 -0.38 -3.22 16 17 C 0.02 0.34 5.87 -104.82 -0.62 -0.28 16 18 C 0.17 3.53 6.06 -14.37 -0.09 3.44 16 19 N -0.44 -9.68 8.24 -11.41 -0.09 -9.78 16 20 C 0.04 0.80 11.09 -19.36 -0.21 0.59 16 21 C -0.27 -4.28 11.35 29.17 0.33 -3.95 16 22 S 0.04 0.75 23.43 -107.50 -2.52 -1.77 16 23 C -0.09 -2.16 6.19 -104.60 -0.65 -2.81 16 24 H 0.27 6.66 8.30 -40.82 -0.34 6.32 16 25 H 0.19 4.92 5.81 -52.48 -0.30 4.61 16 26 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 28 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 29 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 30 H 0.17 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 275.80 15.07 4.16 4.16 Total: -1.00 -29.93 275.80 -9.37 -39.30 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -2.15 Total: 9.86 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -4.26 Total: -23.03 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.43 Total: -43.96 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.52 Total: -1.77 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.93 -9.37 -39.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242897814.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.598 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds