Wall clock time and date at job start Mon Mar 30 2020 00:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31088 * 1 3 3 Si 1.86796 * 120.00666 * 2 1 4 4 H 1.48499 * 109.46982 * 269.99517 * 3 2 1 5 5 H 1.48504 * 109.46948 * 29.99307 * 3 2 1 6 6 H 1.48495 * 109.47491 * 149.98944 * 3 2 1 7 7 C 1.39671 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00186 * 180.02562 * 7 2 1 9 9 C 1.40989 * 119.99766 * 0.02562 * 7 2 1 10 10 C 1.39022 * 126.93145 * 8.73894 * 9 7 2 11 11 N 1.35566 * 109.23500 * 180.33022 * 10 9 7 12 12 H 0.96999 * 124.70905 * 179.78341 * 11 10 9 13 13 C 1.38185 * 110.58678 * 359.74033 * 11 10 9 14 14 C 1.39170 * 132.73348 * 180.02562 * 13 11 10 15 15 C 1.38046 * 120.29310 * 179.97438 * 14 13 11 16 16 C 1.38285 * 120.80240 * 359.97438 * 15 14 13 17 17 C 1.39376 * 120.07676 * 359.97328 * 16 15 14 18 18 C 1.47615 * 120.30179 * 180.02562 * 17 16 15 19 19 N 1.30325 * 125.47007 * 123.96508 * 18 17 16 20 20 C 1.31257 * 117.02771 * 179.97438 * 19 18 17 21 21 C 1.33781 * 115.85330 * 359.97438 * 20 19 18 22 22 S 1.76173 * 125.47451 * 303.65081 * 18 17 16 23 23 C 1.40212 * 107.88392 * 0.02562 * 13 11 10 24 24 H 0.97004 * 119.99248 * 0.02562 * 1 2 3 25 25 H 1.08004 * 125.38261 * 0.09351 * 10 9 7 26 26 H 1.08007 * 119.85316 * 359.97438 * 14 13 11 27 27 H 1.08003 * 119.59839 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.95939 * 180.02562 * 16 15 14 29 29 H 1.08000 * 122.07562 * 180.02562 * 20 19 18 30 30 H 1.08003 * 125.89127 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6176 0.0000 4 1 2.4927 2.0462 -1.4001 5 1 1.4425 2.6527 0.6999 6 1 3.5424 1.4400 0.7002 7 6 2.0092 -1.2096 0.0005 8 1 3.0891 -1.2097 0.0010 9 6 1.3041 -2.4306 0.0005 10 6 -0.0647 -2.6047 -0.1688 11 7 -0.3589 -3.9262 -0.0987 12 1 -1.2503 -4.2989 -0.1844 13 6 0.7875 -4.6687 0.1108 14 6 1.0156 -6.0343 0.2518 15 6 2.2956 -6.5091 0.4563 16 6 3.3703 -5.6414 0.5242 17 6 3.1699 -4.2692 0.3851 18 6 4.3136 -3.3385 0.4562 19 7 4.6447 -2.4758 -0.4628 20 6 5.6966 -1.7270 -0.2266 21 6 6.3125 -1.9381 0.9421 22 16 5.4455 -3.2103 1.8001 23 6 1.8698 -3.7799 0.1790 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7811 -1.8121 -0.3270 26 1 0.1874 -6.7258 0.2010 27 1 2.4599 -7.5711 0.5638 28 1 4.3661 -6.0277 0.6843 29 1 6.0428 -0.9857 -0.9316 30 1 7.1877 -1.4162 1.2999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242897814.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:27 Heat of formation + Delta-G solvation = 84.715608 kcal Electronic energy + Delta-G solvation = -17613.197123 eV Core-core repulsion = 14885.825200 eV Total energy + Delta-G solvation = -2727.371923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47256 -40.14683 -37.42640 -35.36748 -33.17438 -31.02362 -29.94601 -29.38903 -26.84795 -25.80531 -23.20046 -22.34568 -21.46188 -20.58475 -19.24537 -18.15272 -17.69863 -17.05303 -16.40318 -16.01669 -15.87428 -15.31749 -14.93233 -14.61825 -14.48799 -14.34788 -14.00518 -13.11922 -13.00771 -12.96005 -12.54308 -12.36665 -12.18662 -12.15320 -11.59434 -11.48367 -11.24320 -10.51596 -10.31473 -10.03627 -9.54692 -8.76073 -8.36936 -8.36050 -5.89218 -0.35893 0.19152 0.78003 0.89205 1.02292 1.33711 1.35426 1.46654 2.08221 2.28731 2.33271 2.89841 3.06718 3.42801 3.70620 4.15515 4.34228 4.39842 4.41173 4.62986 4.65776 4.78303 4.97078 5.17596 5.33005 5.37014 5.45513 5.66225 5.77755 5.94704 5.97781 6.26521 6.55413 6.85382 6.99097 7.21191 7.27178 7.43048 8.64037 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.011108 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.375337 B = 2519.996702 C = 4361.124139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.007 3.993 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.440 4.440 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.099 4.099 11 N -0.584 5.584 12 H 0.413 0.587 13 C 0.071 3.929 14 C -0.129 4.129 15 C -0.105 4.105 16 C -0.146 4.146 17 C -0.009 4.009 18 C 0.125 3.875 19 N -0.480 5.480 20 C 0.013 3.987 21 C -0.244 4.244 22 S 0.082 5.918 23 C -0.132 4.132 24 H 0.274 0.726 25 H 0.175 0.825 26 H 0.144 0.856 27 H 0.164 0.836 28 H 0.138 0.862 29 H 0.187 0.813 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -7.681 2.851 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.103 0.897 9 C -0.026 4.026 10 C -0.225 4.225 11 N -0.188 5.188 12 H 0.250 0.750 13 C -0.040 4.040 14 C -0.151 4.151 15 C -0.124 4.124 16 C -0.168 4.168 17 C -0.013 4.013 18 C -0.150 4.150 19 N -0.193 5.193 20 C -0.138 4.138 21 C -0.383 4.383 22 S 0.337 5.663 23 C -0.141 4.141 24 H 0.084 0.916 25 H 0.192 0.808 26 H 0.162 0.838 27 H 0.181 0.819 28 H 0.156 0.844 29 H 0.204 0.796 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.989 -7.838 3.349 11.023 hybrid contribution -0.121 1.810 -0.771 1.971 sum 6.868 -6.028 2.578 9.495 Atomic orbital electron populations 1.69611 1.07962 1.28329 1.43650 1.26398 0.95673 1.03316 0.94486 0.85362 0.78887 0.77651 0.78847 1.19495 1.19715 1.19072 1.19427 0.95272 0.89851 1.42783 0.89733 1.18465 0.91753 0.90745 1.01616 1.23045 0.98094 0.83498 1.17837 1.41319 1.07200 1.05783 1.64454 0.75049 1.18571 0.86730 0.93369 1.05302 1.20434 0.98917 0.90369 1.05350 1.20878 0.90457 1.00397 1.00669 1.21031 1.00374 0.89986 1.05444 1.17468 0.87971 0.92070 1.03826 1.25922 0.98888 0.98096 0.92122 1.66699 1.15022 1.05906 1.31687 1.22077 0.92313 1.01022 0.98345 1.27335 1.07972 1.04578 0.98426 1.84535 1.23258 1.34899 1.23582 1.19561 0.92271 0.94780 1.07537 0.91588 0.80826 0.83790 0.81857 0.84407 0.79618 0.77092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.86 10.41 21.79 0.23 -47.63 16 2 C 0.01 0.39 5.49 85.15 0.47 0.85 16 3 Si 0.97 43.16 29.56 68.60 2.03 45.18 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.44 -25.58 8.96 23.29 0.21 -25.37 16 8 H 0.08 4.82 4.47 -2.91 -0.01 4.81 16 9 C -0.02 -1.16 6.08 -20.01 -0.12 -1.28 16 10 C -0.10 -5.28 10.86 84.30 0.92 -4.36 16 11 N -0.58 -25.39 5.99 -184.94 -1.11 -26.50 16 12 H 0.41 14.25 8.96 -92.71 -0.83 13.42 16 13 C 0.07 3.08 7.23 38.85 0.28 3.36 16 14 C -0.13 -4.27 10.06 22.45 0.23 -4.04 16 15 C -0.11 -3.12 9.99 22.24 0.22 -2.90 16 16 C -0.15 -5.02 9.78 22.56 0.22 -4.80 16 17 C -0.01 -0.39 5.87 -19.99 -0.12 -0.51 16 18 C 0.12 5.31 6.06 87.39 0.53 5.84 16 19 N -0.48 -21.29 8.24 -190.02 -1.57 -22.86 16 20 C 0.01 0.47 11.09 83.77 0.93 1.40 16 21 C -0.24 -7.20 11.35 66.81 0.76 -6.44 16 22 S 0.08 2.68 23.43 -56.49 -1.32 1.35 16 23 C -0.13 -6.64 6.19 -19.85 -0.12 -6.76 16 24 H 0.27 14.03 8.30 -92.71 -0.77 13.26 16 25 H 0.18 9.65 5.81 -2.91 -0.02 9.63 16 26 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 27 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 29 H 0.19 5.55 8.06 -2.91 -0.02 5.52 16 30 H 0.21 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -69.57 275.80 3.03 -66.54 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.37 Total: 28.90 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 4.40 Total: -44.99 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -2.45 Total: -96.99 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.35 kcal Total: -69.57 3.03 -66.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242897814.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.259 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds