Wall clock time and date at job start Mon Mar 30 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29160 * 124.81761 * 2 1 4 4 C 1.31377 * 117.30314 * 180.02562 * 3 2 1 5 5 C 1.35157 * 114.21568 * 359.97438 * 4 3 2 6 6 C 1.47720 * 126.11172 * 180.02562 * 5 4 3 7 7 C 1.40050 * 119.55607 * 0.02562 * 6 5 4 8 8 C 1.37614 * 121.14369 * 179.97438 * 7 6 5 9 9 C 1.39640 * 120.21219 * 0.04116 * 8 7 6 10 10 C 1.43209 * 120.43195 * 179.97438 * 9 8 7 11 11 N 9.28865 * 164.01515 * 179.97438 * 2 1 3 12 12 C 1.46582 * 119.13891 * 0.23195 * 9 8 7 13 13 C 1.40864 * 120.54509 * 179.74623 * 12 9 8 14 14 H 1.07999 * 120.00256 * 329.92256 * 13 12 9 15 15 C 1.40221 * 119.99729 * 149.91925 * 13 12 9 16 16 N 1.30672 * 119.99831 * 161.97030 * 15 13 12 17 17 Si 1.86797 * 120.00275 * 341.97457 * 15 13 12 18 18 H 1.48494 * 109.47460 * 95.40327 * 17 15 13 19 19 H 1.48505 * 109.47413 * 215.40723 * 17 15 13 20 20 H 1.48508 * 109.46944 * 335.40610 * 17 15 13 21 21 C 1.38881 * 119.56360 * 179.97438 * 6 5 4 22 22 S 1.70959 * 124.80971 * 180.32113 * 2 1 3 23 23 H 1.09000 * 109.47699 * 89.96986 * 1 2 3 24 24 H 1.09003 * 109.47300 * 209.97152 * 1 2 3 25 25 H 1.09003 * 109.46984 * 329.96819 * 1 2 3 26 26 H 1.08002 * 122.89658 * 179.97438 * 4 3 2 27 27 H 1.07995 * 119.42964 * 359.97438 * 7 6 5 28 28 H 1.08001 * 119.88914 * 180.02562 * 8 7 6 29 29 H 0.97005 * 119.99853 * 179.97438 * 16 15 13 30 30 H 1.07999 * 120.14003 * 0.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2444 1.0604 0.0000 4 6 3.5469 0.8886 -0.0005 5 6 3.9353 -0.4060 -0.0004 6 6 5.3286 -0.8969 -0.0004 7 6 6.3850 0.0225 0.0001 8 6 7.6951 -0.3987 0.0007 9 6 7.9947 -1.7626 -0.0001 10 6 9.3564 -2.2061 -0.0001 11 7 10.4365 -2.5579 0.0011 12 6 6.8974 -2.7344 -0.0067 13 6 7.1657 -4.1172 -0.0130 14 1 8.0639 -4.4909 -0.4821 15 6 6.2667 -5.0086 0.5898 16 7 6.3110 -6.2807 0.2945 17 14 5.0056 -4.3776 1.8148 18 1 3.7205 -4.1232 1.1157 19 1 4.7979 -5.3926 2.8788 20 1 5.4960 -3.1151 2.4241 21 6 5.5734 -2.2640 0.0002 22 16 2.4829 -1.4036 -0.0079 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8897 0.5143 26 1 4.2471 1.7109 -0.0010 27 1 6.1678 1.0804 0.0000 28 1 8.4941 0.3280 0.0014 29 1 5.6893 -6.8975 0.7118 30 1 4.7496 -2.9624 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243378092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:49 Heat of formation + Delta-G solvation = 76.732636 kcal Electronic energy + Delta-G solvation = -16867.804729 eV Core-core repulsion = 14140.086638 eV Total energy + Delta-G solvation = -2727.718091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53292 -38.01687 -35.36013 -34.21049 -32.60705 -30.89187 -30.54706 -27.20179 -25.90150 -23.94610 -22.20384 -21.64319 -19.29569 -17.85845 -17.73748 -17.37394 -15.65687 -15.09459 -14.81896 -14.38112 -14.07425 -13.73401 -13.40079 -13.10430 -12.92016 -12.65858 -12.63518 -12.35508 -11.99628 -11.85393 -11.60179 -11.27511 -11.17314 -11.13557 -10.73183 -10.28364 -10.04117 -9.54160 -9.44030 -9.34343 -8.79733 -8.08156 -7.44360 -7.37648 -4.93080 0.54632 1.49187 1.95050 1.96463 2.35963 2.85025 2.94824 3.03430 3.10020 3.65769 3.76173 3.96260 4.27758 4.31749 5.07128 5.09543 5.13256 5.27419 5.36219 5.42363 5.54934 5.68733 5.77160 5.99543 6.21215 6.37076 6.42447 6.73829 6.80811 7.13292 7.22492 7.38751 7.58523 7.87615 7.90363 8.14386 8.29293 8.64695 9.60585 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.007251 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.985092 B = 3860.642562 C = 5128.556189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.015 3.985 3 N -0.471 5.471 4 C 0.031 3.969 5 C -0.156 4.156 6 C 0.041 3.959 7 C -0.231 4.231 8 C -0.012 4.012 9 C -0.162 4.162 10 C 0.295 3.705 11 N -0.493 5.493 12 C 0.126 3.874 13 C -0.411 4.411 14 H 0.100 0.900 15 C 0.084 3.916 16 N -0.771 5.771 17 Si 0.897 3.103 18 H -0.255 1.255 19 H -0.280 1.280 20 H -0.235 1.235 21 C -0.217 4.217 22 S 0.132 5.868 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.178 0.822 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.295 0.705 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 7.652 0.994 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.261 4.261 3 N -0.186 5.186 4 C -0.121 4.121 5 C -0.277 4.277 6 C 0.038 3.962 7 C -0.253 4.253 8 C -0.033 4.033 9 C -0.168 4.168 10 C -0.015 4.015 11 N -0.172 5.172 12 C 0.121 3.879 13 C -0.438 4.438 14 H 0.118 0.882 15 C -0.141 4.141 16 N -0.392 5.392 17 Si 0.721 3.279 18 H -0.180 1.180 19 H -0.207 1.207 20 H -0.158 1.158 21 C -0.237 4.237 22 S 0.389 5.611 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.195 0.805 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.013 6.229 0.984 12.691 hybrid contribution -0.324 0.789 0.425 0.953 sum -11.337 7.018 1.409 13.408 Atomic orbital electron populations 1.20359 0.85583 1.03801 1.03518 1.27001 1.01623 0.91627 1.05855 1.66101 1.05104 1.31703 1.15666 1.21945 0.90672 0.95640 1.03806 1.24807 0.97719 0.95700 1.09488 1.17595 0.87287 0.93320 0.98027 1.20062 0.91113 0.97304 1.16780 1.20489 0.95656 0.93056 0.94128 1.16939 0.84586 0.92751 1.22566 1.25638 0.92364 0.91885 0.91653 1.81047 1.12973 1.09156 1.13993 1.18294 0.89227 0.92285 0.88141 1.19687 1.06702 0.89260 1.28130 0.88202 1.26364 0.96830 0.94448 0.96453 1.69593 1.31900 1.04375 1.33284 0.86481 0.80384 0.80870 0.80125 1.17991 1.20663 1.15782 1.21060 0.96283 0.93087 1.13310 1.84164 0.97583 1.11502 1.67884 0.89946 0.90395 0.89630 0.80495 0.87392 0.87166 0.89386 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.46 36.00 0.38 -0.31 16 2 C 0.01 0.20 7.38 -13.40 -0.10 0.11 16 3 N -0.47 -7.35 10.52 -11.58 -0.12 -7.47 16 4 C 0.03 0.49 10.83 -18.84 -0.20 0.28 16 5 C -0.16 -2.69 6.42 -36.81 -0.24 -2.93 16 6 C 0.04 0.79 5.86 -105.11 -0.62 0.17 16 7 C -0.23 -4.07 9.49 -39.13 -0.37 -4.44 16 8 C -0.01 -0.23 9.74 -39.29 -0.38 -0.61 16 9 C -0.16 -3.48 5.95 -104.08 -0.62 -4.10 16 10 C 0.30 6.64 14.35 -22.47 -0.32 6.32 16 11 N -0.49 -11.59 18.54 41.84 0.78 -10.81 16 12 C 0.13 2.89 5.27 -104.69 -0.55 2.34 16 13 C -0.41 -10.19 9.02 -37.84 -0.34 -10.54 16 14 H 0.10 2.69 7.65 -52.49 -0.40 2.29 16 15 C 0.08 1.98 5.41 -17.30 -0.09 1.89 16 16 N -0.77 -18.60 13.92 55.56 0.77 -17.83 16 17 Si 0.90 18.33 24.52 -169.99 -4.17 14.16 16 18 H -0.25 -4.83 6.72 56.52 0.38 -4.45 16 19 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.24 -4.94 6.85 56.52 0.39 -4.55 16 21 C -0.22 -4.60 6.72 -38.49 -0.26 -4.86 16 22 S 0.13 2.05 22.13 -107.50 -2.38 -0.33 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.18 2.39 6.93 -52.49 -0.36 2.02 16 27 H 0.11 1.59 6.74 -52.49 -0.35 1.23 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.30 6.33 8.29 -40.82 -0.34 5.99 16 30 H 0.11 2.32 3.96 -52.49 -0.21 2.11 16 LS Contribution 283.28 15.07 4.27 4.27 Total: -1.00 -26.39 283.28 -6.76 -33.15 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -2.19 Total: 1.54 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.72 Total: -16.68 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 1.43 Total: -36.11 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.17 Total: 14.16 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.39 -6.76 -33.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243378092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.879 kcal (2) G-P(sol) polarization free energy of solvation -26.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds