Wall clock time and date at job start Mon Mar 30 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29160 * 124.81761 * 2 1 4 4 C 1.31377 * 117.30314 * 180.02562 * 3 2 1 5 5 C 1.35157 * 114.21568 * 359.97438 * 4 3 2 6 6 C 1.47720 * 126.11172 * 180.02562 * 5 4 3 7 7 C 1.40050 * 119.55607 * 0.02562 * 6 5 4 8 8 C 1.37614 * 121.14369 * 179.97438 * 7 6 5 9 9 C 1.39640 * 120.21219 * 0.04116 * 8 7 6 10 10 C 1.43209 * 120.43195 * 179.97438 * 9 8 7 11 11 N 9.28865 * 164.01515 * 179.97438 * 2 1 3 12 12 C 1.46582 * 119.13891 * 0.23195 * 9 8 7 13 13 C 1.40864 * 120.54509 * 179.74623 * 12 9 8 14 14 H 1.07999 * 120.00256 * 329.92256 * 13 12 9 15 15 C 1.40221 * 119.99729 * 149.91925 * 13 12 9 16 16 N 1.30672 * 119.99831 * 161.97030 * 15 13 12 17 17 Si 1.86797 * 120.00275 * 341.97457 * 15 13 12 18 18 H 1.48494 * 109.47460 * 95.40327 * 17 15 13 19 19 H 1.48505 * 109.47413 * 215.40723 * 17 15 13 20 20 H 1.48508 * 109.46944 * 335.40610 * 17 15 13 21 21 C 1.38881 * 119.56360 * 179.97438 * 6 5 4 22 22 S 1.70959 * 124.80971 * 180.32113 * 2 1 3 23 23 H 1.09000 * 109.47699 * 89.96986 * 1 2 3 24 24 H 1.09003 * 109.47300 * 209.97152 * 1 2 3 25 25 H 1.09003 * 109.46984 * 329.96819 * 1 2 3 26 26 H 1.08002 * 122.89658 * 179.97438 * 4 3 2 27 27 H 1.07995 * 119.42964 * 359.97438 * 7 6 5 28 28 H 1.08001 * 119.88914 * 180.02562 * 8 7 6 29 29 H 0.97005 * 119.99853 * 179.97438 * 16 15 13 30 30 H 1.07999 * 120.14003 * 0.02562 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2444 1.0604 0.0000 4 6 3.5469 0.8886 -0.0005 5 6 3.9353 -0.4060 -0.0004 6 6 5.3286 -0.8969 -0.0004 7 6 6.3850 0.0225 0.0001 8 6 7.6951 -0.3987 0.0007 9 6 7.9947 -1.7626 -0.0001 10 6 9.3564 -2.2061 -0.0001 11 7 10.4365 -2.5579 0.0011 12 6 6.8974 -2.7344 -0.0067 13 6 7.1657 -4.1172 -0.0130 14 1 8.0639 -4.4909 -0.4821 15 6 6.2667 -5.0086 0.5898 16 7 6.3110 -6.2807 0.2945 17 14 5.0056 -4.3776 1.8148 18 1 3.7205 -4.1232 1.1157 19 1 4.7979 -5.3926 2.8788 20 1 5.4960 -3.1151 2.4241 21 6 5.5734 -2.2640 0.0002 22 16 2.4829 -1.4036 -0.0079 23 1 -0.3634 0.0005 -1.0276 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8897 0.5143 26 1 4.2471 1.7109 -0.0010 27 1 6.1678 1.0804 0.0000 28 1 8.4941 0.3280 0.0014 29 1 5.6893 -6.8975 0.7118 30 1 4.7496 -2.9624 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243378092.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:49 Heat of formation + Delta-G solvation = 62.145952 kcal Electronic energy + Delta-G solvation = -16868.437255 eV Core-core repulsion = 14140.086638 eV Total energy + Delta-G solvation = -2728.350617 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.052 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74876 -39.57562 -37.13559 -35.88878 -33.91934 -32.51113 -31.75409 -28.47445 -27.57178 -25.10896 -23.69578 -23.20091 -20.64246 -19.52005 -19.14096 -18.73461 -17.19637 -16.54126 -15.98121 -15.88012 -15.52533 -15.17461 -14.76914 -14.57274 -14.49156 -14.00605 -13.86688 -13.66454 -13.53649 -13.20607 -13.09746 -12.88198 -12.69455 -12.50189 -12.27282 -11.91801 -11.65869 -11.13847 -10.71583 -10.61782 -10.01167 -9.70297 -9.11492 -8.88683 -6.72814 -0.74006 0.32391 0.44840 0.76777 0.79963 1.21606 1.33580 1.43852 1.79414 1.95919 2.01758 2.35787 2.55316 3.26110 3.41726 3.46912 3.86221 4.11028 4.14010 4.34777 4.56165 4.61845 4.70445 4.72907 4.86973 5.04854 5.10220 5.21151 5.29645 5.55964 5.65116 5.78036 5.96856 6.11045 6.43706 6.53391 6.73036 6.86631 7.95042 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.007251 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.985092 B = 3860.642562 C = 5128.556189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 N -0.494 5.494 4 C 0.054 3.946 5 C -0.199 4.199 6 C 0.050 3.950 7 C -0.211 4.211 8 C -0.004 4.004 9 C -0.181 4.181 10 C 0.302 3.698 11 N -0.520 5.520 12 C 0.122 3.878 13 C -0.457 4.457 14 H 0.057 0.943 15 C 0.054 3.946 16 N -0.817 5.817 17 Si 0.942 3.058 18 H -0.233 1.233 19 H -0.271 1.271 20 H -0.245 1.245 21 C -0.237 4.237 22 S 0.113 5.887 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.202 0.798 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.303 0.697 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.890 11.164 1.486 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.233 4.233 3 N -0.208 5.208 4 C -0.098 4.098 5 C -0.320 4.320 6 C 0.047 3.953 7 C -0.232 4.232 8 C -0.025 4.025 9 C -0.187 4.187 10 C -0.008 4.008 11 N -0.199 5.199 12 C 0.116 3.884 13 C -0.485 4.485 14 H 0.075 0.925 15 C -0.166 4.166 16 N -0.440 5.440 17 Si 0.763 3.237 18 H -0.157 1.157 19 H -0.197 1.197 20 H -0.168 1.168 21 C -0.257 4.257 22 S 0.371 5.629 23 H 0.121 0.879 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.218 0.782 27 H 0.168 0.832 28 H 0.164 0.836 29 H 0.115 0.885 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.819 9.735 1.465 16.967 hybrid contribution 0.402 0.033 0.206 0.453 sum -13.417 9.768 1.671 16.680 Atomic orbital electron populations 1.20653 0.82334 1.05469 1.05283 1.27843 1.03292 0.90311 1.01812 1.66249 1.05128 1.31993 1.17467 1.22351 0.91256 0.95563 1.00652 1.24637 0.97069 0.96641 1.13633 1.17841 0.89156 0.92595 0.95681 1.20611 0.90194 0.99214 1.13133 1.20886 0.97256 0.92016 0.92297 1.17244 0.83603 0.94238 1.23655 1.25950 0.92603 0.91244 0.90976 1.81024 1.13974 1.09808 1.15128 1.18422 0.90606 0.91700 0.87640 1.19528 1.06424 0.90902 1.31622 0.92512 1.26967 0.98028 0.94358 0.97200 1.69618 1.33792 1.05362 1.35248 0.85820 0.79354 0.79982 0.78569 1.15734 1.19654 1.16789 1.21044 0.95252 0.94394 1.15048 1.84266 0.97789 1.12700 1.68165 0.87931 0.88395 0.88265 0.78185 0.83183 0.83632 0.88545 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.46 71.23 0.75 -0.35 16 2 C 0.04 1.03 7.38 88.50 0.65 1.68 16 3 N -0.49 -13.27 10.52 -190.54 -2.00 -15.28 16 4 C 0.05 1.46 10.83 84.05 0.91 2.37 16 5 C -0.20 -6.23 6.42 24.07 0.15 -6.07 16 6 C 0.05 1.80 5.86 -20.18 -0.12 1.68 16 7 C -0.21 -6.55 9.49 22.56 0.21 -6.34 16 8 C 0.00 -0.14 9.74 22.46 0.22 0.08 16 9 C -0.18 -7.76 5.95 -19.51 -0.12 -7.87 16 10 C 0.30 13.89 14.35 88.34 1.27 15.16 16 11 N -0.52 -25.13 18.54 19.01 0.35 -24.78 16 12 C 0.12 5.71 5.27 -19.91 -0.10 5.60 16 13 C -0.46 -24.21 9.02 23.39 0.21 -24.00 16 14 H 0.06 3.37 7.65 -2.91 -0.02 3.35 16 15 C 0.05 2.71 5.41 85.35 0.46 3.17 16 16 N -0.82 -41.88 13.92 21.87 0.30 -41.57 16 17 Si 0.94 38.26 24.52 68.60 1.68 39.94 16 18 H -0.23 -8.50 6.72 99.48 0.67 -7.83 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.24 -10.16 6.85 99.48 0.68 -9.48 16 21 C -0.24 -9.96 6.72 22.98 0.15 -9.80 16 22 S 0.11 3.22 22.13 -56.49 -1.25 1.97 16 23 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.20 4.26 6.93 -2.91 -0.02 4.24 16 27 H 0.15 3.45 6.74 -2.91 -0.02 3.43 16 28 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.30 13.72 8.29 -92.70 -0.77 12.95 16 30 H 0.11 4.52 3.96 -2.91 -0.01 4.51 16 Total: -1.00 -60.55 283.28 4.87 -55.68 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.13 Total: 8.73 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.65 Total: -24.68 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.35 Total: -81.63 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.68 Total: 39.94 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.25 Total: 1.97 kcal Total: -60.55 4.87 -55.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243378092.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.825 kcal (2) G-P(sol) polarization free energy of solvation -60.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds