Wall clock time and date at job start Mon Mar 30 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86802 * 119.99674 * 2 1 4 4 H 1.48499 * 109.47169 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47096 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47252 * 149.99723 * 3 2 1 7 7 C 1.40434 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99502 * 179.97438 * 7 2 1 9 9 C 1.40372 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.33189 * 126.68145 * 180.28634 * 9 7 2 11 11 C 1.34279 * 105.48410 * 180.13985 * 10 9 7 12 12 C 1.48472 * 126.20453 * 179.85065 * 11 10 9 13 13 C 1.39465 * 120.04633 * 359.71548 * 12 11 10 14 14 C 1.38047 * 120.07937 * 179.72047 * 13 12 11 15 15 C 1.38333 * 120.49631 * 0.28272 * 14 13 12 16 16 C 1.39540 * 120.09200 * 359.97331 * 15 14 13 17 17 C 1.38787 * 120.04633 * 179.97438 * 12 11 10 18 18 C 1.47270 * 110.64177 * 179.97438 * 16 15 14 19 19 O 1.21255 * 125.94764 * 180.02562 * 18 16 15 20 20 C 1.50942 * 108.10640 * 0.02562 * 18 16 15 21 21 C 1.51028 * 130.34014 * 179.97438 * 15 14 13 22 22 N 1.31263 * 107.59587 * 359.59349 * 11 10 9 23 23 O 1.21265 * 110.52641 * 0.25735 * 22 11 10 24 24 H 0.96998 * 120.00785 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.96340 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.74874 * 180.25887 * 14 13 12 27 27 H 1.07996 * 120.02050 * 359.97147 * 17 12 11 28 28 H 1.08996 * 110.26701 * 241.02611 * 20 18 16 29 29 H 1.08999 * 110.34214 * 119.00942 * 20 18 16 30 30 H 1.08999 * 110.08499 * 299.21795 * 21 15 14 31 31 H 1.09003 * 110.08091 * 60.78569 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.4866 2.0465 -1.4001 5 1 1.4365 2.6527 0.7000 6 1 3.5366 1.4404 0.7001 7 6 2.0074 -1.2162 0.0005 8 1 3.0874 -1.2160 0.0001 9 6 1.3056 -2.4318 0.0005 10 7 1.8328 -3.6549 0.0064 11 6 0.7864 -4.4964 0.0006 12 6 0.8537 -5.9796 0.0005 13 6 2.0914 -6.6224 0.0009 14 6 2.1548 -8.0014 0.0067 15 6 0.9963 -8.7574 0.0062 16 6 -0.2494 -8.1288 0.0005 17 6 -0.3149 -6.7282 -0.0054 18 6 -1.3338 -9.1252 0.0005 19 8 -2.5221 -8.8840 -0.0043 20 6 -0.7085 -10.4990 0.0075 21 6 0.8067 -10.2558 0.0112 22 7 -0.3069 -3.7700 0.0006 23 8 -0.0326 -2.5888 0.0006 24 1 -0.4851 0.8400 -0.0004 25 1 3.0013 -6.0407 0.0017 26 1 3.1161 -8.4937 0.0112 27 1 -1.2743 -6.2323 -0.0095 28 1 -1.0000 -11.0510 -0.8860 29 1 -1.0056 -11.0460 0.9023 30 1 1.2580 -10.6931 -0.8794 31 1 1.2530 -10.6865 0.9076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247384732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:11 Heat of formation + Delta-G solvation = 31.222372 kcal Electronic energy + Delta-G solvation = -18949.957429 eV Core-core repulsion = 15777.512994 eV Total energy + Delta-G solvation = -3172.444435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.11369 -40.40548 -38.04854 -35.34543 -34.20026 -33.35486 -31.30157 -30.38417 -28.82785 -26.68480 -25.91665 -23.31074 -22.36054 -21.27392 -20.53878 -19.62557 -17.92234 -16.38700 -15.95447 -15.85040 -15.73678 -15.51470 -15.00145 -14.77379 -14.05126 -13.72352 -13.54364 -13.34847 -12.97040 -12.70684 -12.32039 -11.81541 -11.70570 -11.53055 -11.50816 -11.45322 -11.03918 -10.57472 -10.20908 -10.20676 -9.89807 -9.66855 -9.07645 -8.84759 -8.81625 -7.92081 -7.15070 -5.11130 0.72660 1.31132 2.41183 2.75012 2.92782 2.98885 3.21784 3.63010 3.68783 3.88882 4.27468 4.39121 4.61055 4.75181 4.88333 4.96413 5.02977 5.06860 5.26552 5.43050 5.51541 5.55286 5.66522 5.67488 5.90094 6.01812 6.23261 6.32848 6.46977 6.77923 6.87172 6.96433 7.22972 7.50912 7.79121 7.98961 8.20927 8.36949 9.83818 10.21661 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045987 B = 0.003863 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.719466 B = 7246.212096 C = 7834.386485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.115 0.885 9 C 0.304 3.696 10 N -0.606 5.606 11 C 0.186 3.814 12 C 0.005 3.995 13 C -0.045 4.045 14 C -0.126 4.126 15 C -0.055 4.055 16 C -0.201 4.201 17 C -0.026 4.026 18 C 0.408 3.592 19 O -0.447 6.447 20 C -0.170 4.170 21 C -0.079 4.079 22 N -0.452 5.452 23 O 0.055 5.945 24 H 0.294 0.706 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -13.098 0.002 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.155 4.155 3 Si 0.760 3.240 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.451 4.451 8 H 0.133 0.867 9 C 0.114 3.886 10 N -0.350 5.350 11 C -0.085 4.085 12 C 0.003 3.997 13 C -0.065 4.065 14 C -0.144 4.144 15 C -0.056 4.056 16 C -0.202 4.202 17 C -0.046 4.046 18 C 0.286 3.714 19 O -0.323 6.323 20 C -0.208 4.208 21 C -0.116 4.116 22 N -0.179 5.179 23 O 0.004 5.996 24 H 0.105 0.895 25 H 0.161 0.839 26 H 0.148 0.852 27 H 0.153 0.847 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.570 -13.412 0.012 13.656 hybrid contribution 0.420 1.088 -0.010 1.166 sum 2.990 -12.324 0.001 12.682 Atomic orbital electron populations 1.69628 1.07809 1.31047 1.30378 1.26216 0.95145 1.02386 0.91801 0.85806 0.80095 0.78360 0.79704 1.18805 1.19660 1.17924 1.18604 0.95091 0.85379 1.46054 0.86742 1.24166 0.79757 0.93895 0.90774 1.72328 1.27539 0.98401 1.36706 1.23163 0.87065 0.94513 1.03725 1.17432 0.93134 0.87897 1.01221 1.21454 0.97996 0.93693 0.93375 1.20471 0.97326 0.93034 1.03556 1.20598 0.93006 0.95543 0.96452 1.20895 0.95876 0.94025 1.09418 1.21204 0.98835 0.91552 0.92986 1.22491 0.87636 0.90812 0.70454 1.90546 1.17999 1.86133 1.37578 1.22279 0.96134 0.97151 1.05225 1.20764 0.95224 0.91874 1.03740 1.74606 1.23887 0.91071 1.28352 1.85525 1.25835 1.17616 1.70611 0.89505 0.83884 0.85211 0.84730 0.87550 0.87538 0.89197 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.13 12.05 55.57 0.67 -18.46 16 2 C 0.07 1.66 5.50 -17.28 -0.10 1.56 16 3 Si 0.94 17.17 29.56 -169.99 -5.03 12.15 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 7 C -0.41 -10.68 9.48 -37.95 -0.36 -11.04 16 8 H 0.11 2.76 7.85 -52.49 -0.41 2.35 16 9 C 0.30 8.54 7.80 -16.33 -0.13 8.41 16 10 N -0.61 -16.32 11.29 -11.63 -0.13 -16.45 16 11 C 0.19 4.76 7.78 -156.52 -1.22 3.54 16 12 C 0.00 0.10 5.86 -105.02 -0.62 -0.51 16 13 C -0.05 -0.77 9.69 -39.19 -0.38 -1.15 16 14 C -0.13 -1.65 10.01 -39.62 -0.40 -2.05 16 15 C -0.05 -0.70 6.21 -103.94 -0.65 -1.34 16 16 C -0.20 -3.17 6.10 -105.00 -0.64 -3.81 16 17 C -0.03 -0.49 9.75 -38.64 -0.38 -0.87 16 18 C 0.41 5.86 7.77 -30.52 -0.24 5.63 16 19 O -0.45 -7.94 18.02 5.58 0.10 -7.84 16 20 C -0.17 -1.53 6.86 -27.52 -0.19 -1.72 16 21 C -0.08 -0.66 6.80 -27.48 -0.19 -0.85 16 22 N -0.45 -12.49 11.82 31.47 0.37 -12.12 16 23 O 0.05 1.60 9.72 15.17 0.15 1.74 16 24 H 0.29 6.52 8.29 -40.82 -0.34 6.18 16 25 H 0.14 2.43 7.86 -52.49 -0.41 2.02 16 26 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.13 2.78 7.84 -52.49 -0.41 2.36 16 28 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 285.87 15.07 4.31 4.31 Total: -1.00 -31.54 285.87 -7.51 -39.05 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -2.48 Total: 1.81 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -5.47 Total: -4.20 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.91 Total: -47.03 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: 0.25 Total: -6.10 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.54 -7.51 -39.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247384732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.277 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds