Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86802 * 119.99674 * 2 1 4 4 H 1.48499 * 109.47169 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47096 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47252 * 149.99723 * 3 2 1 7 7 C 1.40434 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99502 * 179.97438 * 7 2 1 9 9 C 1.40372 * 119.99744 * 0.02562 * 7 2 1 10 10 N 1.33189 * 126.68145 * 180.28634 * 9 7 2 11 11 C 1.34279 * 105.48410 * 180.13985 * 10 9 7 12 12 C 1.48472 * 126.20453 * 179.85065 * 11 10 9 13 13 C 1.39465 * 120.04633 * 359.71548 * 12 11 10 14 14 C 1.38047 * 120.07937 * 179.72047 * 13 12 11 15 15 C 1.38333 * 120.49631 * 0.28272 * 14 13 12 16 16 C 1.39540 * 120.09200 * 359.97331 * 15 14 13 17 17 C 1.38787 * 120.04633 * 179.97438 * 12 11 10 18 18 C 1.47270 * 110.64177 * 179.97438 * 16 15 14 19 19 O 1.21255 * 125.94764 * 180.02562 * 18 16 15 20 20 C 1.50942 * 108.10640 * 0.02562 * 18 16 15 21 21 C 1.51028 * 130.34014 * 179.97438 * 15 14 13 22 22 N 1.31263 * 107.59587 * 359.59349 * 11 10 9 23 23 O 1.21265 * 110.52641 * 0.25735 * 22 11 10 24 24 H 0.96998 * 120.00785 * 0.02562 * 1 2 3 25 25 H 1.08002 * 119.96340 * 0.02562 * 13 12 11 26 26 H 1.07999 * 119.74874 * 180.25887 * 14 13 12 27 27 H 1.07996 * 120.02050 * 359.97147 * 17 12 11 28 28 H 1.08996 * 110.26701 * 241.02611 * 20 18 16 29 29 H 1.08999 * 110.34214 * 119.00942 * 20 18 16 30 30 H 1.08999 * 110.08499 * 299.21795 * 21 15 14 31 31 H 1.09003 * 110.08091 * 60.78569 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.4866 2.0465 -1.4001 5 1 1.4365 2.6527 0.7000 6 1 3.5366 1.4404 0.7001 7 6 2.0074 -1.2162 0.0005 8 1 3.0874 -1.2160 0.0001 9 6 1.3056 -2.4318 0.0005 10 7 1.8328 -3.6549 0.0064 11 6 0.7864 -4.4964 0.0006 12 6 0.8537 -5.9796 0.0005 13 6 2.0914 -6.6224 0.0009 14 6 2.1548 -8.0014 0.0067 15 6 0.9963 -8.7574 0.0062 16 6 -0.2494 -8.1288 0.0005 17 6 -0.3149 -6.7282 -0.0054 18 6 -1.3338 -9.1252 0.0005 19 8 -2.5221 -8.8840 -0.0043 20 6 -0.7085 -10.4990 0.0075 21 6 0.8067 -10.2558 0.0112 22 7 -0.3069 -3.7700 0.0006 23 8 -0.0326 -2.5888 0.0006 24 1 -0.4851 0.8400 -0.0004 25 1 3.0013 -6.0407 0.0017 26 1 3.1161 -8.4937 0.0112 27 1 -1.2743 -6.2323 -0.0095 28 1 -1.0000 -11.0510 -0.8860 29 1 -1.0056 -11.0460 0.9023 30 1 1.2580 -10.6931 -0.8794 31 1 1.2530 -10.6865 0.9076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247384732.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = 9.181670 kcal Electronic energy + Delta-G solvation = -18950.913185 eV Core-core repulsion = 15777.512994 eV Total energy + Delta-G solvation = -3173.400191 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.12677 -41.54233 -39.31297 -36.63965 -36.14487 -35.08043 -32.89723 -31.91400 -30.11440 -28.62405 -27.03687 -24.74934 -24.04205 -22.87489 -21.93559 -20.96078 -19.64659 -17.99861 -17.77060 -17.35695 -16.95907 -16.73859 -16.54146 -16.33045 -15.32128 -15.09261 -14.93266 -14.50718 -14.31970 -13.94692 -13.68559 -13.49542 -13.11484 -13.08488 -12.67631 -12.43565 -12.42956 -12.14839 -11.98996 -11.89056 -11.55214 -11.15782 -10.77351 -10.62764 -10.11896 -9.48674 -9.00118 -7.17098 -0.49258 -0.07493 0.96146 1.25580 1.39514 1.59428 1.62069 1.99906 2.13263 2.74370 2.78087 3.00252 3.12369 3.30945 3.46879 3.69436 3.85803 3.96671 4.16454 4.27023 4.33582 4.48091 4.67197 4.79422 4.88515 4.90705 5.00801 5.11662 5.13692 5.28332 5.35833 5.47945 5.75325 5.80169 5.97754 6.20490 6.37883 6.41982 8.01234 8.17474 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045987 B = 0.003863 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.719466 B = 7246.212096 C = 7834.386485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.026 3.974 3 Si 1.026 2.974 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.245 1.245 7 C -0.428 4.428 8 H 0.128 0.872 9 C 0.269 3.731 10 N -0.623 5.623 11 C 0.196 3.804 12 C -0.042 4.042 13 C -0.048 4.048 14 C -0.107 4.107 15 C -0.023 4.023 16 C -0.224 4.224 17 C -0.045 4.045 18 C 0.400 3.600 19 O -0.497 6.497 20 C -0.156 4.156 21 C -0.072 4.072 22 N -0.491 5.491 23 O 0.018 5.982 24 H 0.307 0.693 25 H 0.138 0.862 26 H 0.183 0.817 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 -15.783 0.020 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.196 4.196 3 Si 0.842 3.158 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.168 1.168 7 C -0.465 4.465 8 H 0.146 0.854 9 C 0.081 3.919 10 N -0.368 5.368 11 C -0.076 4.076 12 C -0.044 4.044 13 C -0.068 4.068 14 C -0.124 4.124 15 C -0.024 4.024 16 C -0.225 4.225 17 C -0.065 4.065 18 C 0.281 3.719 19 O -0.375 6.375 20 C -0.193 4.193 21 C -0.108 4.108 22 N -0.225 5.225 23 O -0.026 6.026 24 H 0.118 0.882 25 H 0.156 0.844 26 H 0.200 0.800 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.328 -16.083 0.030 16.943 hybrid contribution -0.433 1.789 -0.017 1.841 sum 4.896 -14.294 0.012 15.109 Atomic orbital electron populations 1.69705 1.09947 1.33152 1.29540 1.27485 0.95905 1.06050 0.90127 0.84557 0.78653 0.72289 0.80329 1.17659 1.18399 1.16778 1.19219 0.95948 0.85804 1.45536 0.85432 1.24867 0.80019 0.95229 0.91796 1.72289 1.28016 0.98389 1.38132 1.24025 0.86104 0.96806 1.00630 1.17557 0.95423 0.85439 1.06003 1.21548 0.95987 0.95792 0.93455 1.20922 0.99783 0.91002 1.00741 1.21247 0.91011 0.98450 0.91722 1.21354 0.98858 0.92687 1.09647 1.21038 0.96933 0.93646 0.94918 1.23371 0.86656 0.93168 0.68667 1.90529 1.19866 1.87186 1.39934 1.22393 0.96000 0.93154 1.07764 1.21029 0.94864 0.87681 1.07205 1.74534 1.25082 0.91019 1.31864 1.85448 1.26312 1.18385 1.72504 0.88156 0.84389 0.80011 0.88361 0.84796 0.84784 0.85453 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.46 12.05 21.91 0.26 -41.19 16 2 C 0.03 1.27 5.50 85.42 0.47 1.74 16 3 Si 1.03 34.51 29.56 68.60 2.03 36.53 16 4 H -0.25 -8.06 7.11 99.48 0.71 -7.36 16 5 H -0.26 -8.21 7.11 99.48 0.71 -7.50 16 6 H -0.24 -7.78 7.11 99.48 0.71 -7.07 16 7 C -0.43 -22.95 9.48 23.32 0.22 -22.73 16 8 H 0.13 6.27 7.85 -2.91 -0.02 6.25 16 9 C 0.27 16.12 7.80 85.06 0.66 16.79 16 10 N -0.62 -35.86 11.29 -305.11 -3.44 -39.30 16 11 C 0.20 10.86 7.78 137.46 1.07 11.93 16 12 C -0.04 -1.87 5.86 -20.12 -0.12 -1.99 16 13 C -0.05 -1.63 9.69 22.52 0.22 -1.41 16 14 C -0.11 -2.40 10.01 22.25 0.22 -2.18 16 15 C -0.02 -0.50 6.21 -19.42 -0.12 -0.62 16 16 C -0.22 -6.98 6.10 -20.11 -0.12 -7.10 16 17 C -0.04 -1.86 9.75 22.88 0.22 -1.63 16 18 C 0.40 11.03 7.77 28.14 0.22 11.25 16 19 O -0.50 -18.16 18.02 -2.95 -0.05 -18.21 16 20 C -0.16 -1.97 6.86 30.08 0.21 -1.76 16 21 C -0.07 -0.68 6.80 30.11 0.20 -0.47 16 22 N -0.49 -29.82 11.82 -56.08 -0.66 -30.48 16 23 O 0.02 1.11 9.72 64.37 0.63 1.74 16 24 H 0.31 13.92 8.29 -92.71 -0.77 13.15 16 25 H 0.14 4.74 7.86 -2.91 -0.02 4.72 16 26 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.10 4.64 7.84 -2.91 -0.02 4.61 16 28 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -80.15 285.87 3.30 -76.85 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.18 Total: 12.27 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 3.36 Total: 1.80 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -3.84 Total: -110.98 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.57 Total: -16.47 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.53 kcal Total: -80.15 3.30 -76.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247384732.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.034 kcal (2) G-P(sol) polarization free energy of solvation -80.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds