Wall clock time and date at job start Mon Mar 30 2020 01:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30526 * 1 3 3 Si 1.86801 * 119.99859 * 2 1 4 4 H 1.48509 * 109.46881 * 269.99725 * 3 2 1 5 5 H 1.48494 * 109.47401 * 30.00079 * 3 2 1 6 6 H 1.48499 * 109.46944 * 150.00392 * 3 2 1 7 7 C 1.40430 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.40373 * 119.99724 * 359.97438 * 7 2 1 10 10 N 1.33196 * 126.68513 * 180.28994 * 9 7 2 11 11 C 1.34278 * 105.48382 * 180.11012 * 10 9 7 12 12 C 1.48470 * 126.20464 * 179.88689 * 11 10 9 13 13 C 1.39384 * 119.95662 * 359.71069 * 12 11 10 14 14 C 1.38165 * 120.06057 * 179.97438 * 13 12 11 15 15 C 1.37799 * 120.30424 * 0.02562 * 14 13 12 16 16 C 1.40422 * 120.31801 * 359.97438 * 15 14 13 17 17 C 1.39248 * 119.96290 * 179.69192 * 12 11 10 18 18 C 1.50969 * 130.51676 * 0.02562 * 17 12 11 19 19 C 1.53494 * 106.29696 * 179.97438 * 18 17 12 20 20 C 1.47273 * 129.95118 * 180.02562 * 16 15 14 21 21 O 1.21257 * 125.95427 * 359.96201 * 20 16 15 22 22 N 1.31260 * 107.59583 * 359.61961 * 11 10 9 23 23 O 1.21266 * 110.53360 * 0.24477 * 22 11 10 24 24 H 0.97005 * 119.99505 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.96786 * 0.25611 * 13 12 11 26 26 H 1.07998 * 119.84539 * 180.02562 * 14 13 12 27 27 H 1.08003 * 119.83759 * 180.02562 * 15 14 13 28 28 H 1.09001 * 110.08753 * 299.20331 * 18 17 12 29 29 H 1.08992 * 110.09236 * 60.78893 * 18 17 12 30 30 H 1.08999 * 110.27539 * 118.96009 * 19 18 17 31 31 H 1.09004 * 110.27663 * 240.94492 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4868 2.0464 -1.4002 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4402 0.7000 7 6 2.0074 -1.2161 0.0005 8 1 3.0874 -1.2162 0.0001 9 6 1.3055 -2.4318 0.0016 10 7 1.8326 -3.6550 0.0077 11 6 0.7861 -4.4963 0.0037 12 6 0.8533 -5.9795 0.0053 13 6 2.0911 -6.6202 0.0054 14 6 2.1561 -8.0003 0.0075 15 6 1.0005 -8.7508 0.0089 16 6 -0.2542 -8.1203 0.0089 17 6 -0.3204 -6.7288 0.0072 18 6 -1.7647 -6.2892 0.0074 19 6 -2.6057 -7.5733 0.0092 20 6 -1.6062 -8.7044 0.0107 21 8 -1.8704 -9.8878 0.0121 22 7 -0.3071 -3.7698 0.0039 23 8 -0.0328 -2.5886 0.0027 24 1 -0.4850 0.8401 0.0004 25 1 3.0003 -6.0373 0.0084 26 1 3.1171 -8.4931 0.0079 27 1 1.0600 -9.8292 0.0109 28 1 -1.9769 -5.7010 0.9002 29 1 -1.9780 -5.7037 -0.8868 30 1 -3.2264 -7.6170 0.9041 31 1 -3.2285 -7.6182 -0.8843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247385057.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:46 Heat of formation + Delta-G solvation = 31.587711 kcal Electronic energy + Delta-G solvation = -19322.609963 eV Core-core repulsion = 16150.181371 eV Total energy + Delta-G solvation = -3172.428593 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.13131 -40.34040 -38.02762 -34.87312 -34.22242 -33.89659 -31.44255 -29.71706 -29.02290 -26.68262 -25.71562 -23.60620 -21.79048 -21.53792 -20.55118 -19.53487 -17.85575 -16.11796 -15.99509 -15.82887 -15.61906 -15.52226 -15.29578 -14.81186 -13.89862 -13.68921 -13.34041 -13.26353 -12.92893 -12.65355 -12.09844 -11.79739 -11.69292 -11.53954 -11.44331 -11.12105 -10.98849 -10.59616 -10.33664 -10.24153 -9.94305 -9.62504 -9.09233 -8.87969 -8.65985 -7.95845 -7.18484 -5.13823 0.74324 1.33263 2.41890 2.72704 2.90855 2.96671 3.22173 3.65331 3.66507 4.03900 4.24360 4.54584 4.71291 4.84999 4.93351 5.11413 5.19072 5.20502 5.25718 5.37210 5.55868 5.73224 5.89773 5.94410 6.08786 6.10126 6.35958 6.37697 6.50817 6.74824 6.82246 6.95006 7.21903 7.53975 7.76956 7.96740 8.18075 8.34385 9.80316 10.18585 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038392 B = 0.004459 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.141375 B = 6277.328448 C = 6985.929673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.071 3.929 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.114 0.886 9 C 0.305 3.695 10 N -0.607 5.607 11 C 0.188 3.812 12 C 0.013 3.987 13 C -0.046 4.046 14 C -0.143 4.143 15 C -0.052 4.052 16 C -0.205 4.205 17 C -0.018 4.018 18 C -0.077 4.077 19 C -0.172 4.172 20 C 0.413 3.587 21 O -0.457 6.457 22 N -0.451 5.451 23 O 0.052 5.948 24 H 0.293 0.707 25 H 0.143 0.857 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -6.686 -0.004 6.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.155 4.155 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.451 4.451 8 H 0.132 0.868 9 C 0.115 3.885 10 N -0.351 5.351 11 C -0.083 4.083 12 C 0.011 3.989 13 C -0.066 4.066 14 C -0.161 4.161 15 C -0.070 4.070 16 C -0.206 4.206 17 C -0.021 4.021 18 C -0.113 4.113 19 C -0.210 4.210 20 C 0.292 3.708 21 O -0.333 6.333 22 N -0.179 5.179 23 O 0.002 5.998 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.141 -7.722 0.009 7.806 hybrid contribution 0.480 1.129 -0.009 1.227 sum -0.661 -6.593 0.000 6.626 Atomic orbital electron populations 1.69629 1.07785 1.31002 1.30490 1.26199 0.95144 1.02351 0.91757 0.85819 0.80135 0.78389 0.79727 1.18801 1.19655 1.17927 1.18607 0.95107 0.85421 1.45998 0.86792 1.24138 0.79748 0.93863 0.90712 1.72346 1.27639 0.98435 1.36655 1.23174 0.87079 0.94498 1.03523 1.17108 0.92089 0.87678 1.02013 1.21471 0.97554 0.94146 0.93381 1.20974 0.98269 0.93568 1.03261 1.21118 0.90705 0.99921 0.95303 1.20921 0.95262 0.94690 1.09739 1.20537 0.95097 0.92727 0.93711 1.20759 0.88970 0.96335 1.05266 1.22367 0.98956 0.94484 1.05162 1.22524 0.89530 0.88932 0.69784 1.90502 1.85559 1.18732 1.38520 1.74582 1.23749 0.90935 1.28588 1.85520 1.25804 1.17757 1.70715 0.89542 0.83967 0.85005 0.85602 0.88521 0.88525 0.87521 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.49 12.05 55.57 0.67 -17.82 16 2 C 0.07 1.63 5.50 -17.28 -0.10 1.54 16 3 Si 0.94 16.77 29.56 -169.99 -5.03 11.74 16 4 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 6 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 7 C -0.41 -10.42 9.48 -37.95 -0.36 -10.78 16 8 H 0.11 2.70 7.85 -52.49 -0.41 2.28 16 9 C 0.31 8.28 7.80 -16.32 -0.13 8.16 16 10 N -0.61 -15.85 11.28 -11.62 -0.13 -15.98 16 11 C 0.19 4.55 7.77 -156.53 -1.22 3.34 16 12 C 0.01 0.26 5.88 -104.88 -0.62 -0.36 16 13 C -0.05 -0.78 9.69 -39.18 -0.38 -1.16 16 14 C -0.14 -1.97 10.01 -39.77 -0.40 -2.37 16 15 C -0.05 -0.73 10.10 -38.92 -0.39 -1.12 16 16 C -0.21 -3.23 6.11 -105.01 -0.64 -3.87 16 17 C -0.02 -0.32 6.11 -103.72 -0.63 -0.96 16 18 C -0.08 -1.18 5.39 -27.50 -0.15 -1.33 16 19 C -0.17 -2.14 6.87 -27.50 -0.19 -2.33 16 20 C 0.41 6.17 7.77 -30.51 -0.24 5.94 16 21 O -0.46 -7.72 18.02 5.58 0.10 -7.62 16 22 N -0.45 -11.45 10.73 31.47 0.34 -11.11 16 23 O 0.05 1.43 9.72 15.15 0.15 1.58 16 24 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 25 H 0.14 2.43 7.85 -52.49 -0.41 2.02 16 26 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 28 H 0.10 1.55 8.11 -51.93 -0.42 1.13 16 29 H 0.10 1.55 8.11 -51.93 -0.42 1.13 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 283.77 15.07 4.28 4.28 Total: -1.00 -29.35 283.77 -7.55 -36.90 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.49 Total: 3.34 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -5.44 Total: -5.31 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.88 Total: -44.92 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: 0.25 Total: -6.03 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.35 -7.55 -36.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247385057.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.485 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds