Wall clock time and date at job start Mon Mar 30 2020 01:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00173 * 2 1 4 4 H 1.48494 * 109.47332 * 269.99878 * 3 2 1 5 5 H 1.48501 * 109.46907 * 30.00539 * 3 2 1 6 6 H 1.48508 * 109.46919 * 150.00009 * 3 2 1 7 7 C 1.37873 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00168 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47152 * 180.02562 * 9 7 2 11 11 N 1.30957 * 126.42543 * 90.00063 * 10 9 7 12 12 C 1.35284 * 105.57802 * 180.02562 * 11 10 9 13 13 C 1.48178 * 126.42727 * 179.97438 * 12 11 10 14 14 C 1.39035 * 120.32655 * 359.97438 * 13 12 11 15 15 C 1.38387 * 120.12541 * 179.97438 * 14 13 12 16 16 C 1.38013 * 120.84405 * 0.02562 * 15 14 13 17 17 C 1.38897 * 120.22860 * 359.97438 * 16 15 14 18 18 O 1.34868 * 133.35516 * 180.02562 * 17 16 15 19 19 C 1.34401 * 110.86684 * 179.97438 * 18 17 16 20 20 C 1.34147 * 110.10532 * 359.97438 * 19 18 17 21 21 C 1.40410 * 120.32872 * 179.71770 * 13 12 11 22 22 N 1.30867 * 107.14813 * 359.97438 * 12 11 10 23 23 O 1.21300 * 110.07466 * 0.02562 * 22 12 11 24 24 H 0.97002 * 119.99661 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46928 * 59.99986 * 9 7 2 26 26 H 1.08991 * 109.46893 * 300.00108 * 9 7 2 27 27 H 1.07999 * 119.93429 * 0.02562 * 14 13 12 28 28 H 1.08000 * 119.57985 * 180.02562 * 15 14 13 29 29 H 1.08002 * 119.88598 * 179.97438 * 16 15 14 30 30 H 1.07999 * 124.94715 * 180.02562 * 19 18 17 31 31 H 1.08005 * 126.90299 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 7 2.7355 -4.2357 1.0532 12 6 3.5574 -5.1963 0.5717 13 6 4.3681 -6.1433 1.3728 14 6 4.3308 -6.0986 2.7619 15 6 5.0891 -6.9854 3.5060 16 6 5.8908 -7.9231 2.8873 17 6 5.9469 -7.9898 1.5011 18 8 6.6202 -8.7783 0.6385 19 6 6.3366 -8.4482 -0.6331 20 6 5.4645 -7.4293 -0.6615 21 6 5.1773 -7.0982 0.7365 22 7 3.5024 -5.1322 -0.7342 23 8 2.7461 -4.2477 -1.0762 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5566 -0.8902 26 1 0.6247 -2.5570 0.8896 27 1 3.7082 -5.3710 3.2612 28 1 5.0532 -6.9431 4.5845 29 1 6.4766 -8.6075 3.4832 30 1 6.7498 -8.9333 -1.5050 31 1 5.0546 -6.9507 -1.5387 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247443936.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:55 Heat of formation + Delta-G solvation = 72.318183 kcal Electronic energy + Delta-G solvation = -19047.328388 eV Core-core repulsion = 15876.666001 eV Total energy + Delta-G solvation = -3170.662387 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.43742 -43.46610 -39.14190 -36.82556 -35.79734 -34.31224 -33.34998 -31.48693 -30.62504 -30.13026 -26.09292 -25.76976 -24.10377 -23.68326 -22.66948 -21.61582 -19.31637 -18.71385 -18.30842 -18.24160 -17.98836 -17.14732 -16.74431 -16.64733 -15.71566 -15.32616 -14.74018 -14.47995 -14.37566 -14.01371 -13.90596 -13.68818 -13.25215 -13.02808 -12.95363 -12.62973 -12.60567 -12.33213 -12.18466 -11.99260 -11.90145 -11.29154 -10.81790 -10.68468 -9.71665 -9.19054 -8.32324 -6.45899 -0.62510 0.17415 0.36900 1.22725 1.43229 1.43455 1.49856 1.55471 1.76282 1.94520 2.38005 2.50389 2.65092 2.98787 3.08252 3.51635 3.67939 3.95856 4.08130 4.18197 4.30256 4.44294 4.59194 4.69439 4.79328 4.87783 5.04219 5.08450 5.18600 5.23526 5.33069 5.36685 5.53106 5.57143 5.85670 6.05379 6.58138 7.14858 7.23060 8.78572 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031540 B = 0.004086 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.543085 B = 6850.503241 C = 7170.115417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.110 3.890 10 C 0.234 3.766 11 N -0.509 5.509 12 C 0.200 3.800 13 C -0.011 4.011 14 C -0.092 4.092 15 C -0.089 4.089 16 C -0.074 4.074 17 C 0.031 3.969 18 O -0.193 6.193 19 C 0.037 3.963 20 C -0.241 4.241 21 C -0.127 4.127 22 N -0.400 5.400 23 O 0.056 5.944 24 H 0.274 0.726 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.138 0.862 28 H 0.185 0.815 29 H 0.176 0.824 30 H 0.259 0.741 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.773 -16.171 3.948 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.072 3.928 10 C 0.015 3.985 11 N -0.243 5.243 12 C -0.070 4.070 13 C -0.013 4.013 14 C -0.112 4.112 15 C -0.107 4.107 16 C -0.093 4.093 17 C -0.016 4.016 18 O -0.094 6.094 19 C -0.027 4.027 20 C -0.260 4.260 21 C -0.130 4.130 22 N -0.113 5.113 23 O 0.002 5.998 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.202 0.798 29 H 0.194 0.806 30 H 0.275 0.725 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.247 -16.828 3.903 21.176 hybrid contribution -0.346 1.438 -0.606 1.598 sum 11.901 -15.391 3.297 19.733 Atomic orbital electron populations 1.70000 1.07268 1.28831 1.49149 1.25709 0.95814 1.02593 0.93560 0.85371 0.78353 0.78120 0.78778 1.19333 1.19788 1.19756 1.20995 0.92994 0.90209 1.54192 0.93050 1.17956 0.89853 0.84525 1.00510 1.29751 0.94684 0.94675 0.79352 1.72037 1.13534 1.09600 1.29140 1.24340 0.97905 0.96636 0.88089 1.16998 0.97545 0.94093 0.92702 1.21404 0.99275 0.99720 0.90833 1.21301 0.94382 0.92928 1.02054 1.20567 1.00342 1.00409 0.87973 1.19836 0.96023 0.92936 0.92851 1.84030 1.58142 1.51478 1.15740 1.24827 0.96621 0.96060 0.85201 1.22759 1.04994 1.02650 0.95585 1.20066 0.99851 0.97994 0.95085 1.74779 1.12602 1.08606 1.15280 1.85227 1.43298 1.34729 1.36517 0.91729 0.92614 0.92382 0.84408 0.79768 0.80648 0.72549 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.87 13.29 21.45 0.28 -50.59 16 2 C 0.02 1.30 5.46 84.65 0.46 1.77 16 3 Si 0.97 42.33 29.54 68.60 2.03 44.35 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -29.89 9.09 25.60 0.23 -29.66 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.11 5.59 5.60 29.10 0.16 5.76 16 10 C 0.23 11.10 7.68 88.35 0.68 11.78 16 11 N -0.51 -23.49 11.27 -302.38 -3.41 -26.90 16 12 C 0.20 8.53 7.80 137.17 1.07 9.60 16 13 C -0.01 -0.41 5.90 -19.92 -0.12 -0.52 16 14 C -0.09 -2.63 9.70 22.50 0.22 -2.42 16 15 C -0.09 -1.72 9.99 22.25 0.22 -1.49 16 16 C -0.07 -1.39 10.05 22.37 0.22 -1.17 16 17 C 0.03 0.77 7.41 22.96 0.17 0.94 16 18 O -0.19 -4.31 10.58 -9.06 -0.10 -4.40 16 19 C 0.04 0.73 11.97 66.89 0.80 1.53 16 20 C -0.24 -6.78 10.48 23.50 0.25 -6.53 16 21 C -0.13 -4.05 6.19 -20.06 -0.12 -4.17 16 22 N -0.40 -17.35 10.74 -58.96 -0.63 -17.98 16 23 O 0.06 2.56 11.29 74.55 0.84 3.40 16 24 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.06 3.04 8.14 -2.39 -0.02 3.03 16 27 H 0.14 4.04 7.88 -2.91 -0.02 4.02 16 28 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.26 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.15 4.53 7.33 -2.91 -0.02 4.51 16 Total: -1.00 -67.12 287.06 4.44 -62.68 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.17 Total: 4.02 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.25 Total: -14.59 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.75 Total: -95.47 kcal Atomic # 8 Polarization: -1.75 SS G_CDS: 0.75 Total: -1.00 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.12 4.44 -62.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247443936.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.001 kcal (2) G-P(sol) polarization free energy of solvation -67.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds