Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99841 * 2 1 4 4 H 1.48492 * 109.47301 * 270.00327 * 3 2 1 5 5 H 1.48497 * 109.46831 * 30.00525 * 3 2 1 6 6 H 1.48503 * 109.46598 * 150.00259 * 3 2 1 7 7 C 1.37873 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00553 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47272 * 180.02562 * 9 7 2 11 11 N 1.30976 * 126.44086 * 90.27602 * 10 9 7 12 12 C 1.35222 * 105.57784 * 180.10275 * 11 10 9 13 13 C 1.48396 * 126.41134 * 179.90898 * 12 11 10 14 14 C 1.39833 * 119.99118 * 359.43203 * 13 12 11 15 15 C 1.37547 * 120.56820 * 179.74391 * 14 13 12 16 16 C 1.39071 * 120.12676 * 0.55225 * 15 14 13 17 17 O 1.34824 * 133.25723 * 179.68787 * 16 15 14 18 18 C 1.34436 * 110.92653 * 180.02562 * 17 16 15 19 19 C 1.33966 * 110.17895 * 359.97438 * 18 17 16 20 20 C 1.40568 * 119.51327 * 359.70779 * 16 15 14 21 21 C 1.38873 * 119.99332 * 179.71227 * 13 12 11 22 22 N 1.30775 * 107.17019 * 359.64442 * 12 11 10 23 23 O 1.21284 * 110.09477 * 0.22597 * 22 12 11 24 24 H 0.97007 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47098 * 60.00627 * 9 7 2 26 26 H 1.09004 * 109.47297 * 300.00914 * 9 7 2 27 27 H 1.07995 * 119.71555 * 0.03015 * 14 13 12 28 28 H 1.08004 * 119.93925 * 180.25915 * 15 14 13 29 29 H 1.08001 * 124.90830 * 179.97438 * 18 17 16 30 30 H 1.08004 * 126.91150 * 180.02562 * 19 18 17 31 31 H 1.08004 * 120.24578 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 7 2.7320 -4.2392 1.0531 12 6 3.5566 -5.1966 0.5716 13 6 4.3670 -6.1462 1.3738 14 6 4.3280 -6.0918 2.7705 15 6 5.0704 -6.9696 3.5258 16 6 5.8783 -7.9153 2.9038 17 8 6.7007 -8.8771 3.3687 18 6 7.2750 -9.5489 2.3557 19 6 6.8561 -9.0601 1.1808 20 6 5.9249 -7.9704 1.4999 21 6 5.1685 -7.0849 0.7373 22 7 3.5017 -5.1328 -0.7335 23 8 2.7459 -4.2482 -1.0760 24 1 -0.4851 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5570 0.8896 27 1 3.7062 -5.3572 3.2605 28 1 5.0294 -6.9212 4.6040 29 1 7.9731 -10.3647 2.4722 30 1 7.1452 -9.3992 0.1970 31 1 5.2052 -7.1270 -0.3413 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247444465.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = 89.791732 kcal Electronic energy + Delta-G solvation = -18718.442309 eV Core-core repulsion = 15548.537632 eV Total energy + Delta-G solvation = -3169.904677 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.78083 -42.56850 -38.17569 -35.11293 -33.85601 -32.97901 -32.19719 -30.23686 -29.48158 -28.38917 -24.57372 -24.16457 -23.08801 -21.91849 -21.47807 -20.57600 -17.71024 -17.53295 -17.44709 -16.52922 -16.27110 -16.22677 -15.56002 -14.77611 -14.34736 -13.97734 -13.32706 -13.26876 -12.90872 -12.74606 -12.70368 -12.50922 -12.10218 -11.43904 -11.17566 -11.12426 -10.96688 -10.81194 -10.39603 -10.38086 -10.18033 -9.99077 -9.21437 -8.63729 -8.45053 -8.31263 -6.27224 -4.33165 0.73936 0.88584 2.02661 2.19604 2.59838 2.91660 3.23295 3.29740 3.34425 3.68039 3.75908 3.91563 4.29054 4.30658 4.48719 4.66749 4.87849 5.10737 5.11773 5.22012 5.27089 5.44751 5.63584 5.75705 6.02618 6.07458 6.19899 6.36812 6.41984 6.53845 6.62973 6.96168 7.08701 7.15200 7.66204 7.88870 8.67227 8.84293 9.32059 10.83124 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.003543 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.077821 B = 7899.947827 C = 8133.501765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.100 3.900 10 C 0.244 3.756 11 N -0.500 5.500 12 C 0.197 3.803 13 C -0.018 4.018 14 C -0.050 4.050 15 C -0.110 4.110 16 C 0.061 3.939 17 O -0.196 6.196 18 C 0.001 3.999 19 C -0.204 4.204 20 C -0.138 4.138 21 C -0.037 4.037 22 N -0.400 5.400 23 O 0.066 5.934 24 H 0.268 0.732 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.139 0.861 29 H 0.208 0.792 30 H 0.159 0.841 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 -15.966 4.254 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.062 3.938 10 C 0.026 3.974 11 N -0.233 5.233 12 C -0.073 4.073 13 C -0.020 4.020 14 C -0.069 4.069 15 C -0.129 4.129 16 C 0.013 3.987 17 O -0.097 6.097 18 C -0.063 4.063 19 C -0.223 4.223 20 C -0.139 4.139 21 C -0.058 4.058 22 N -0.111 5.111 23 O 0.009 5.991 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.169 0.831 28 H 0.157 0.843 29 H 0.224 0.776 30 H 0.176 0.824 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.991 -16.467 4.427 20.288 hybrid contribution 0.419 0.964 -0.314 1.097 sum 11.410 -15.503 4.113 19.684 Atomic orbital electron populations 1.69918 1.06038 1.27669 1.48862 1.24919 0.94991 0.99453 0.94291 0.86349 0.79750 0.82176 0.78413 1.20256 1.20840 1.19643 1.20792 0.93278 0.88812 1.53511 0.92004 1.18252 0.89809 0.84429 1.01352 1.30128 0.94208 0.94438 0.78650 1.72045 1.13080 1.09072 1.29116 1.23703 0.98558 0.97037 0.87972 1.17171 0.97818 0.95026 0.91987 1.21041 0.96805 0.97149 0.91944 1.19821 0.97778 0.94717 1.00557 1.19780 0.94729 0.92014 0.92185 1.84004 1.49849 1.40176 1.35664 1.23924 0.99307 0.98169 0.84912 1.22525 1.01510 0.98702 0.99548 1.19777 1.01579 0.99495 0.93060 1.20514 0.93053 0.92018 1.00171 1.74749 1.12644 1.08934 1.14784 1.85243 1.42926 1.34234 1.36647 0.92224 0.92238 0.91174 0.83067 0.84317 0.77557 0.82357 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -13.94 9.09 -34.44 -0.31 -14.26 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.10 2.42 5.60 -29.03 -0.16 2.25 16 10 C 0.24 5.45 7.69 -12.99 -0.10 5.35 16 11 N -0.50 -10.86 11.24 -9.88 -0.11 -10.97 16 12 C 0.20 3.93 7.80 -156.11 -1.22 2.71 16 13 C -0.02 -0.30 5.88 -104.88 -0.62 -0.92 16 14 C -0.05 -0.72 9.67 -39.24 -0.38 -1.10 16 15 C -0.11 -1.37 10.05 -39.52 -0.40 -1.77 16 16 C 0.06 0.79 7.41 -38.39 -0.28 0.51 16 17 O -0.20 -2.26 10.58 3.90 0.04 -2.21 16 18 C 0.00 0.01 11.96 29.23 0.35 0.36 16 19 C -0.20 -2.05 11.14 -37.61 -0.42 -2.47 16 20 C -0.14 -1.84 6.39 -105.18 -0.67 -2.51 16 21 C -0.04 -0.55 9.74 -38.98 -0.38 -0.93 16 22 N -0.40 -8.21 11.85 30.97 0.37 -7.84 16 23 O 0.07 1.43 11.29 18.04 0.20 1.63 16 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.15 2.15 7.86 -52.49 -0.41 1.74 16 28 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.14 1.95 7.86 -52.48 -0.41 1.53 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -29.59 289.18 -6.59 -36.19 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -2.48 Total: -1.98 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -4.69 Total: -11.09 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.99 Total: -42.46 kcal Atomic # 8 Polarization: -0.83 SS G_CDS: 0.24 Total: -0.58 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.59 -6.59 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444465.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.977 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds