Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99841 * 2 1 4 4 H 1.48492 * 109.47301 * 270.00327 * 3 2 1 5 5 H 1.48497 * 109.46831 * 30.00525 * 3 2 1 6 6 H 1.48503 * 109.46598 * 150.00259 * 3 2 1 7 7 C 1.37873 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00553 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47272 * 180.02562 * 9 7 2 11 11 N 1.30976 * 126.44086 * 90.27602 * 10 9 7 12 12 C 1.35222 * 105.57784 * 180.10275 * 11 10 9 13 13 C 1.48396 * 126.41134 * 179.90898 * 12 11 10 14 14 C 1.39833 * 119.99118 * 359.43203 * 13 12 11 15 15 C 1.37547 * 120.56820 * 179.74391 * 14 13 12 16 16 C 1.39071 * 120.12676 * 0.55225 * 15 14 13 17 17 O 1.34824 * 133.25723 * 179.68787 * 16 15 14 18 18 C 1.34436 * 110.92653 * 180.02562 * 17 16 15 19 19 C 1.33966 * 110.17895 * 359.97438 * 18 17 16 20 20 C 1.40568 * 119.51327 * 359.70779 * 16 15 14 21 21 C 1.38873 * 119.99332 * 179.71227 * 13 12 11 22 22 N 1.30775 * 107.17019 * 359.64442 * 12 11 10 23 23 O 1.21284 * 110.09477 * 0.22597 * 22 12 11 24 24 H 0.97007 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47098 * 60.00627 * 9 7 2 26 26 H 1.09004 * 109.47297 * 300.00914 * 9 7 2 27 27 H 1.07995 * 119.71555 * 0.03015 * 14 13 12 28 28 H 1.08004 * 119.93925 * 180.25915 * 15 14 13 29 29 H 1.08001 * 124.90830 * 179.97438 * 18 17 16 30 30 H 1.08004 * 126.91150 * 180.02562 * 19 18 17 31 31 H 1.08004 * 120.24578 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 7 2.7320 -4.2392 1.0531 12 6 3.5566 -5.1966 0.5716 13 6 4.3670 -6.1462 1.3738 14 6 4.3280 -6.0918 2.7705 15 6 5.0704 -6.9696 3.5258 16 6 5.8783 -7.9153 2.9038 17 8 6.7007 -8.8771 3.3687 18 6 7.2750 -9.5489 2.3557 19 6 6.8561 -9.0601 1.1808 20 6 5.9249 -7.9704 1.4999 21 6 5.1685 -7.0849 0.7373 22 7 3.5017 -5.1328 -0.7335 23 8 2.7459 -4.2482 -1.0760 24 1 -0.4851 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5570 0.8896 27 1 3.7062 -5.3572 3.2605 28 1 5.0294 -6.9212 4.6040 29 1 7.9731 -10.3647 2.4722 30 1 7.1452 -9.3992 0.1970 31 1 5.2052 -7.1270 -0.3413 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444465.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = 71.988313 kcal Electronic energy + Delta-G solvation = -18719.214323 eV Core-core repulsion = 15548.537632 eV Total energy + Delta-G solvation = -3170.676691 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.44242 -43.46216 -39.27810 -36.76604 -35.71960 -33.95162 -33.87035 -31.53579 -30.46368 -30.18184 -26.06118 -25.86387 -24.45755 -23.16096 -22.35588 -22.06641 -19.30960 -18.91715 -18.45374 -18.29792 -17.70836 -17.13758 -16.92794 -16.57080 -15.38750 -15.16487 -14.93700 -14.46639 -14.27010 -14.15301 -13.97798 -13.67969 -13.53903 -13.25468 -12.93163 -12.61932 -12.57868 -12.27868 -12.13227 -11.90366 -11.86266 -11.28731 -10.95557 -10.67209 -9.58417 -9.30398 -8.31051 -6.44414 -0.44738 -0.13800 0.39593 1.35023 1.43364 1.44483 1.46870 1.56377 1.75255 1.95288 2.39015 2.50011 2.59555 2.97817 3.07719 3.46875 3.60730 3.92068 4.04335 4.16991 4.31814 4.37640 4.57319 4.67709 4.79558 4.86090 5.03740 5.06079 5.10501 5.23670 5.31074 5.38005 5.42681 5.58791 5.87233 6.05989 6.59894 7.15257 7.24496 8.79761 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.003543 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.077821 B = 7899.947827 C = 8133.501765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.110 3.890 10 C 0.236 3.764 11 N -0.509 5.509 12 C 0.206 3.794 13 C -0.049 4.049 14 C -0.062 4.062 15 C -0.097 4.097 16 C 0.052 3.948 17 O -0.199 6.199 18 C 0.024 3.976 19 C -0.222 4.222 20 C -0.150 4.150 21 C -0.041 4.041 22 N -0.407 5.407 23 O 0.057 5.943 24 H 0.273 0.727 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.259 0.741 30 H 0.182 0.818 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 -17.334 5.219 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.071 3.929 10 C 0.018 3.982 11 N -0.243 5.243 12 C -0.064 4.064 13 C -0.051 4.051 14 C -0.081 4.081 15 C -0.115 4.115 16 C 0.004 3.996 17 O -0.100 6.100 18 C -0.039 4.039 19 C -0.241 4.241 20 C -0.151 4.151 21 C -0.061 4.061 22 N -0.121 5.121 23 O 0.004 5.996 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.166 0.834 28 H 0.186 0.814 29 H 0.275 0.725 30 H 0.199 0.801 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.105 -17.838 5.373 22.777 hybrid contribution -0.119 1.181 -0.547 1.307 sum 12.986 -16.657 4.826 21.665 Atomic orbital electron populations 1.69999 1.07270 1.28805 1.49218 1.25714 0.95816 1.02621 0.93627 0.85371 0.78380 0.78133 0.78746 1.19376 1.19920 1.19671 1.21011 0.93073 0.90198 1.54068 0.92900 1.17963 0.89866 0.84521 1.00558 1.29750 0.94575 0.94593 0.79309 1.72026 1.13548 1.09637 1.29103 1.24277 0.97677 0.96536 0.87928 1.17318 0.99227 0.95826 0.92733 1.21023 0.97815 0.98101 0.91176 1.20041 0.96254 0.93395 1.01819 1.19965 0.95003 0.92458 0.92211 1.84042 1.49476 1.39784 1.36712 1.24940 0.97901 0.97535 0.83557 1.22874 1.01501 0.98216 1.01494 1.20134 1.01699 0.99904 0.93382 1.20506 0.93222 0.92178 1.00233 1.74724 1.13040 1.09044 1.15251 1.85223 1.43322 1.34608 1.36451 0.91764 0.92588 0.92327 0.83437 0.81369 0.72505 0.80068 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.70 13.29 21.44 0.28 -50.42 16 2 C 0.02 1.24 5.46 84.65 0.46 1.70 16 3 Si 0.97 42.14 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -29.57 9.09 25.60 0.23 -29.33 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.11 5.48 5.60 29.10 0.16 5.65 16 10 C 0.24 10.96 7.69 88.36 0.68 11.64 16 11 N -0.51 -22.82 11.24 -302.50 -3.40 -26.22 16 12 C 0.21 8.42 7.80 137.28 1.07 9.49 16 13 C -0.05 -1.65 5.88 -20.03 -0.12 -1.77 16 14 C -0.06 -1.78 9.67 22.49 0.22 -1.56 16 15 C -0.10 -2.26 10.05 22.31 0.22 -2.03 16 16 C 0.05 1.24 7.41 23.04 0.17 1.41 16 17 O -0.20 -3.88 10.58 -8.96 -0.09 -3.98 16 18 C 0.02 0.31 11.96 66.85 0.80 1.11 16 19 C -0.22 -3.77 11.14 23.55 0.26 -3.51 16 20 C -0.15 -3.77 6.39 -20.22 -0.13 -3.89 16 21 C -0.04 -1.21 9.74 22.66 0.22 -0.99 16 22 N -0.41 -17.18 11.85 -59.13 -0.70 -17.88 16 23 O 0.06 2.56 11.29 74.60 0.84 3.40 16 24 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 25 H 0.06 2.79 8.14 -2.38 -0.02 2.78 16 26 H 0.06 3.03 8.14 -2.38 -0.02 3.01 16 27 H 0.15 4.27 7.86 -2.91 -0.02 4.24 16 28 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.26 0.39 8.06 -2.91 -0.02 0.37 16 30 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 31 H 0.13 3.88 7.86 -2.91 -0.02 3.85 16 Total: -1.00 -64.37 289.18 4.39 -59.98 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.17 Total: 3.04 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.25 Total: -12.09 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -3.82 Total: -94.52 kcal Atomic # 8 Polarization: -1.32 SS G_CDS: 0.75 Total: -0.58 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -64.37 4.39 -59.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444465.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.973 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds