Wall clock time and date at job start Mon Mar 30 2020 01:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 N 1.30973 * 126.42975 * 89.71210 * 10 9 7 12 12 C 1.35247 * 105.57826 * 179.89954 * 11 10 9 13 13 C 1.48308 * 126.42243 * 180.13671 * 12 11 10 14 14 C 1.39048 * 120.14390 * 0.02685 * 13 12 11 15 15 C 1.38433 * 120.53976 * 179.72038 * 14 13 12 16 16 C 1.37882 * 120.43135 * 0.55871 * 15 14 13 17 17 C 1.39436 * 119.86140 * 359.71980 * 16 15 14 18 18 C 1.46815 * 134.29294 * 180.02562 * 17 16 15 19 19 C 1.33996 * 106.16167 * 180.02562 * 18 17 16 20 20 O 1.34454 * 110.12469 * 0.02562 * 19 18 17 21 21 C 1.34700 * 110.90602 * 359.97438 * 20 19 18 22 22 N 1.30818 * 107.16225 * 0.36809 * 12 11 10 23 23 O 1.21292 * 110.08443 * 359.77046 * 22 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 26 26 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 27 27 H 1.07996 * 119.72495 * 359.97438 * 14 13 12 28 28 H 1.08001 * 119.78951 * 180.29872 * 15 14 13 29 29 H 1.08000 * 120.07113 * 179.74816 * 16 15 14 30 30 H 1.07995 * 126.92146 * 0.02562 * 18 17 16 31 31 H 1.07995 * 124.93491 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 7 4.2636 -3.3479 -1.0733 12 6 4.6914 -4.5389 -0.5961 13 6 5.1037 -5.7137 -1.4020 14 6 5.0723 -5.6535 -2.7908 15 6 5.4609 -6.7431 -3.5511 16 6 5.8739 -7.9087 -2.9411 17 6 5.9066 -7.9901 -1.5495 18 6 6.2799 -9.0389 -0.5923 19 6 6.0971 -8.5135 0.6267 20 8 5.6494 -7.2499 0.5235 21 6 5.5191 -6.8901 -0.7680 22 7 4.6686 -4.4622 0.7096 23 8 4.2824 -3.3658 1.0558 24 1 -0.4849 0.8401 0.0041 25 1 3.8711 -0.6782 -0.9024 26 1 3.8785 -0.6825 0.8776 27 1 4.7461 -4.7478 -3.2803 28 1 5.4363 -6.6814 -4.6290 29 1 6.1719 -8.7567 -3.5399 30 1 6.6311 -10.0335 -0.8240 31 1 6.2826 -9.0300 1.5569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247444868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:23 Heat of formation + Delta-G solvation = 96.620507 kcal Electronic energy + Delta-G solvation = -19097.467341 eV Core-core repulsion = 15927.858782 eV Total energy + Delta-G solvation = -3169.608559 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.83365 -42.50049 -38.05153 -35.32696 -34.03551 -32.81232 -31.97948 -30.39668 -29.44469 -28.91489 -24.58492 -23.94432 -22.82578 -22.19742 -21.59323 -20.26216 -17.67561 -17.49041 -17.33103 -16.69970 -16.64499 -16.12111 -15.56675 -14.78436 -14.40466 -14.00590 -13.57369 -13.28517 -12.79482 -12.67103 -12.60350 -12.39238 -12.03987 -11.62049 -11.46544 -11.32828 -11.08681 -10.74542 -10.45703 -10.36512 -10.09017 -9.70137 -9.20053 -8.76108 -8.68256 -8.13985 -6.24510 -4.29012 0.54138 1.22576 1.87363 2.23675 2.70734 2.94294 3.20134 3.27291 3.28325 3.61751 3.72223 3.86802 4.25556 4.29892 4.45563 4.66663 4.92105 5.07409 5.12878 5.14680 5.35795 5.36756 5.61837 5.71380 6.01456 6.13513 6.23995 6.27385 6.37103 6.49659 6.55458 6.60713 6.80936 7.05577 7.31174 8.22798 8.75067 8.79356 9.29361 10.87655 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.004175 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.558180 B = 6704.888804 C = 7117.047381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.070 3.930 10 C 0.245 3.755 11 N -0.493 5.493 12 C 0.192 3.808 13 C 0.006 3.994 14 C -0.050 4.050 15 C -0.137 4.137 16 C -0.061 4.061 17 C -0.137 4.137 18 C -0.214 4.214 19 C 0.008 3.992 20 O -0.177 6.177 21 C 0.080 3.920 22 N -0.384 5.384 23 O 0.072 5.928 24 H 0.269 0.731 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.150 0.850 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.159 0.841 31 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.404 -14.561 -3.701 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.031 3.969 10 C 0.026 3.974 11 N -0.226 5.226 12 C -0.078 4.078 13 C 0.003 3.997 14 C -0.070 4.070 15 C -0.155 4.155 16 C -0.080 4.080 17 C -0.138 4.138 18 C -0.233 4.233 19 C -0.057 4.057 20 O -0.077 6.077 21 C 0.030 3.970 22 N -0.093 5.093 23 O 0.013 5.987 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.176 0.824 31 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.417 -14.975 -3.360 20.385 hybrid contribution 0.202 0.753 0.042 0.781 sum 13.619 -14.222 -3.318 19.968 Atomic orbital electron populations 1.69868 1.06280 1.27529 1.48703 1.24860 0.94826 0.98963 0.93774 0.86805 0.80441 0.83333 0.79049 1.19640 1.20722 1.18573 1.20624 0.86685 0.95548 1.53909 0.90437 1.18589 0.98316 0.79683 1.00351 1.29425 0.90350 0.98581 0.79033 1.72010 1.20182 1.01526 1.28896 1.23666 1.01851 0.94245 0.88059 1.16216 1.05247 0.86730 0.91461 1.21131 0.95819 0.99748 0.90308 1.20983 1.01530 0.92615 1.00388 1.20634 0.97562 0.98088 0.91721 1.19865 1.05532 0.93833 0.94545 1.22462 1.09250 1.00364 0.91258 1.24066 0.98859 0.82661 1.00136 1.84162 1.69134 1.28773 1.25613 1.19370 1.00866 0.94869 0.81917 1.74918 1.19107 1.00723 1.14550 1.85262 1.59825 1.17130 1.36450 0.92051 0.91809 0.92379 0.83203 0.84467 0.85144 0.82351 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 19.75 27.47 -169.99 -4.67 15.08 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 7 C -0.53 -14.45 9.65 -34.44 -0.33 -14.78 16 8 H 0.08 2.37 7.98 -52.49 -0.42 1.95 16 9 C 0.07 1.58 4.67 -29.04 -0.14 1.45 16 10 C 0.24 5.47 7.69 -12.98 -0.10 5.37 16 11 N -0.49 -10.82 11.24 -9.87 -0.11 -10.94 16 12 C 0.19 3.99 7.80 -156.10 -1.22 2.77 16 13 C 0.01 0.10 5.88 -104.81 -0.62 -0.52 16 14 C -0.05 -0.72 9.68 -39.21 -0.38 -1.10 16 15 C -0.14 -1.53 10.01 -39.64 -0.40 -1.93 16 16 C -0.06 -0.67 10.09 -39.27 -0.40 -1.07 16 17 C -0.14 -1.80 6.39 -105.18 -0.67 -2.47 16 18 C -0.21 -2.24 11.14 -37.61 -0.42 -2.66 16 19 C 0.01 0.09 11.96 29.24 0.35 0.44 16 20 O -0.18 -2.82 10.21 4.20 0.04 -2.78 16 21 C 0.08 1.30 7.07 -38.13 -0.27 1.03 16 22 N -0.38 -8.32 11.69 30.98 0.36 -7.96 16 23 O 0.07 1.59 11.29 18.02 0.20 1.79 16 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.06 1.38 7.57 -51.93 -0.39 0.98 16 26 H 0.06 1.22 7.20 -51.93 -0.37 0.85 16 27 H 0.15 2.12 7.85 -52.49 -0.41 1.71 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.21 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -32.24 285.26 -6.24 -38.48 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.46 Total: -1.33 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -4.68 Total: -11.38 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 1.02 Total: -44.17 kcal Atomic # 8 Polarization: -1.23 SS G_CDS: 0.25 Total: -0.98 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.24 -6.24 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.104 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds