Wall clock time and date at job start Mon Mar 30 2020 01:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 C 1.50698 * 109.47166 * 179.97438 * 9 7 2 11 11 N 1.30973 * 126.42975 * 89.71210 * 10 9 7 12 12 C 1.35247 * 105.57826 * 179.89954 * 11 10 9 13 13 C 1.48308 * 126.42243 * 180.13671 * 12 11 10 14 14 C 1.39048 * 120.14390 * 0.02685 * 13 12 11 15 15 C 1.38433 * 120.53976 * 179.72038 * 14 13 12 16 16 C 1.37882 * 120.43135 * 0.55871 * 15 14 13 17 17 C 1.39436 * 119.86140 * 359.71980 * 16 15 14 18 18 C 1.46815 * 134.29294 * 180.02562 * 17 16 15 19 19 C 1.33996 * 106.16167 * 180.02562 * 18 17 16 20 20 O 1.34454 * 110.12469 * 0.02562 * 19 18 17 21 21 C 1.34700 * 110.90602 * 359.97438 * 20 19 18 22 22 N 1.30818 * 107.16225 * 0.36809 * 12 11 10 23 23 O 1.21292 * 110.08443 * 359.77046 * 22 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 26 26 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 27 27 H 1.07996 * 119.72495 * 359.97438 * 14 13 12 28 28 H 1.08001 * 119.78951 * 180.29872 * 15 14 13 29 29 H 1.08000 * 120.07113 * 179.74816 * 16 15 14 30 30 H 1.07995 * 126.92146 * 0.02562 * 18 17 16 31 31 H 1.07995 * 124.93491 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 6 4.0138 -2.6149 -0.0170 11 7 4.2636 -3.3479 -1.0733 12 6 4.6914 -4.5389 -0.5961 13 6 5.1037 -5.7137 -1.4020 14 6 5.0723 -5.6535 -2.7908 15 6 5.4609 -6.7431 -3.5511 16 6 5.8739 -7.9087 -2.9411 17 6 5.9066 -7.9901 -1.5495 18 6 6.2799 -9.0389 -0.5923 19 6 6.0971 -8.5135 0.6267 20 8 5.6494 -7.2499 0.5235 21 6 5.5191 -6.8901 -0.7680 22 7 4.6686 -4.4622 0.7096 23 8 4.2824 -3.3658 1.0558 24 1 -0.4849 0.8401 0.0041 25 1 3.8711 -0.6782 -0.9024 26 1 3.8785 -0.6825 0.8776 27 1 4.7461 -4.7478 -3.2803 28 1 5.4363 -6.6814 -4.6290 29 1 6.1719 -8.7567 -3.5399 30 1 6.6311 -10.0335 -0.8240 31 1 6.2826 -9.0300 1.5569 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247444868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:22 Heat of formation + Delta-G solvation = 74.540407 kcal Electronic energy + Delta-G solvation = -19098.424806 eV Core-core repulsion = 15927.858782 eV Total energy + Delta-G solvation = -3170.566024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.50255 -43.48032 -39.10090 -36.93013 -35.82190 -34.32431 -33.40394 -31.65329 -30.72762 -30.34328 -25.97298 -25.76114 -24.16134 -23.27036 -22.91759 -21.55564 -19.52496 -18.76892 -18.63473 -18.34025 -17.94408 -17.17485 -16.64628 -16.56693 -15.75541 -15.41117 -14.88999 -14.48221 -14.28749 -14.12347 -13.80330 -13.64721 -13.39202 -13.15997 -12.93324 -12.72551 -12.47673 -12.30585 -12.11627 -12.05876 -11.75852 -11.33619 -10.83977 -10.75941 -9.71089 -9.18806 -8.35624 -6.48214 -0.57580 0.17287 0.33645 1.13475 1.44705 1.46264 1.57128 1.59290 1.78312 1.93005 2.34868 2.45294 2.64777 2.92416 3.04249 3.47949 3.66163 3.97487 4.08099 4.19943 4.28221 4.43913 4.55420 4.64384 4.70772 4.75499 4.81526 5.04239 5.11632 5.23494 5.29933 5.33183 5.43978 5.63504 6.06978 6.10038 6.54092 7.11175 7.14976 8.80830 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.004175 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.558180 B = 6704.888804 C = 7117.047381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.021 3.979 3 Si 0.956 3.044 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.230 1.230 7 C -0.543 4.543 8 H 0.022 0.978 9 C 0.076 3.924 10 C 0.233 3.767 11 N -0.504 5.504 12 C 0.197 3.803 13 C -0.044 4.044 14 C -0.053 4.053 15 C -0.131 4.131 16 C -0.041 4.041 17 C -0.148 4.148 18 C -0.203 4.203 19 C -0.005 4.005 20 O -0.213 6.213 21 C 0.048 3.952 22 N -0.402 5.402 23 O 0.060 5.940 24 H 0.274 0.726 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.144 0.856 28 H 0.177 0.823 29 H 0.176 0.824 30 H 0.199 0.801 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 -15.751 -5.141 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.152 1.152 7 C -0.581 4.581 8 H 0.041 0.959 9 C 0.037 3.963 10 C 0.014 3.986 11 N -0.237 5.237 12 C -0.072 4.072 13 C -0.047 4.047 14 C -0.073 4.073 15 C -0.149 4.149 16 C -0.059 4.059 17 C -0.149 4.149 18 C -0.221 4.221 19 C -0.069 4.069 20 O -0.114 6.114 21 C -0.002 4.002 22 N -0.115 5.115 23 O 0.005 5.995 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.162 0.838 28 H 0.195 0.805 29 H 0.193 0.807 30 H 0.216 0.784 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 15.960 -16.178 -4.783 23.223 hybrid contribution -0.606 0.868 0.414 1.137 sum 15.354 -15.309 -4.369 22.118 Atomic orbital electron populations 1.70030 1.08644 1.29053 1.50141 1.25927 0.95683 1.03540 0.92683 0.85592 0.79972 0.76914 0.79908 1.18451 1.20587 1.15222 1.20738 0.89224 0.93775 1.54376 0.95917 1.18513 0.95128 0.80399 1.02225 1.29435 0.90882 0.98773 0.79493 1.71989 1.20503 1.02215 1.29034 1.24355 1.00077 0.94762 0.88040 1.16545 1.09028 0.86552 0.92570 1.21303 0.95668 1.00912 0.89392 1.21411 1.00047 0.91407 1.02028 1.21211 0.94584 0.99025 0.91095 1.20388 1.05219 0.93538 0.95735 1.22929 1.07972 1.01183 0.90016 1.24982 0.98346 0.81172 1.02398 1.84124 1.70083 1.31249 1.25972 1.19648 1.02069 0.95609 0.82841 1.74886 1.20684 1.00571 1.15326 1.85226 1.60346 1.17412 1.36498 0.91682 0.89852 0.89909 0.83817 0.80539 0.80651 0.78369 0.73787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.02 1.16 5.47 84.66 0.46 1.62 16 3 Si 0.96 40.08 27.47 68.60 1.88 41.97 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 7 C -0.54 -30.76 9.65 25.60 0.25 -30.52 16 8 H 0.02 1.48 7.98 -2.91 -0.02 1.46 16 9 C 0.08 3.47 4.67 29.10 0.14 3.61 16 10 C 0.23 10.81 7.69 88.35 0.68 11.49 16 11 N -0.50 -23.02 11.24 -302.43 -3.40 -26.42 16 12 C 0.20 8.62 7.80 137.24 1.07 9.69 16 13 C -0.04 -1.61 5.88 -19.99 -0.12 -1.73 16 14 C -0.05 -1.50 9.68 22.51 0.22 -1.29 16 15 C -0.13 -2.54 10.01 22.23 0.22 -2.32 16 16 C -0.04 -0.73 10.09 22.47 0.23 -0.50 16 17 C -0.15 -3.55 6.39 -20.22 -0.13 -3.68 16 18 C -0.20 -3.58 11.14 23.55 0.26 -3.32 16 19 C -0.01 -0.11 11.96 66.85 0.80 0.69 16 20 O -0.21 -6.89 10.21 -7.87 -0.08 -6.97 16 21 C 0.05 1.57 7.07 23.21 0.16 1.74 16 22 N -0.40 -18.40 11.69 -59.04 -0.69 -19.09 16 23 O 0.06 2.77 11.29 74.55 0.84 3.62 16 24 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.08 3.48 7.57 -2.39 -0.02 3.46 16 26 H 0.08 3.36 7.20 -2.39 -0.02 3.35 16 27 H 0.14 4.14 7.85 -2.91 -0.02 4.11 16 28 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 31 H 0.25 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.27 285.26 4.22 -72.06 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.12 Total: 6.20 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.24 Total: -14.51 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -3.79 Total: -102.35 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.76 Total: -3.36 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.88 Total: 41.97 kcal Total: -76.27 4.22 -72.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247444868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.597 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds