Wall clock time and date at job start Mon Mar 30 2020 00:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76205 * 102.99742 * 2 1 4 4 C 1.39093 * 120.08319 * 270.23448 * 3 2 1 5 5 Cl 1.73592 * 120.05131 * 0.04190 * 4 3 2 6 6 C 1.38151 * 119.89584 * 180.29885 * 4 3 2 7 7 C 1.50697 * 119.96205 * 179.70058 * 6 4 3 8 8 C 1.38328 * 120.06760 * 359.72197 * 6 4 3 9 9 C 1.38262 * 120.17003 * 359.97438 * 8 6 4 10 10 C 1.38141 * 120.09758 * 0.02721 * 9 8 6 11 11 C 1.50706 * 120.03058 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47049 * 264.99829 * 11 10 9 13 13 C 1.50696 * 109.47088 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00371 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00350 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99521 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00352 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46915 * 90.00349 * 17 15 13 19 19 H 1.48505 * 109.47309 * 210.00137 * 17 15 13 20 20 H 1.48503 * 109.47240 * 330.00472 * 17 15 13 21 21 H 1.09005 * 109.47056 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47403 * 299.99557 * 1 2 3 23 23 H 1.09000 * 109.47736 * 60.00137 * 1 2 3 24 24 H 1.09001 * 109.47126 * 270.01760 * 7 6 4 25 25 H 1.08994 * 109.47420 * 30.02030 * 7 6 4 26 26 H 1.09005 * 109.47102 * 150.02170 * 7 6 4 27 27 H 1.08003 * 119.91277 * 180.02562 * 8 6 4 28 28 H 1.08005 * 119.95144 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47087 * 25.00192 * 11 10 9 30 30 H 1.09005 * 109.46702 * 145.00049 * 11 10 9 31 31 H 1.09007 * 109.47360 * 299.99872 * 12 11 10 32 32 H 1.08997 * 109.47379 * 60.00219 * 12 11 10 33 33 H 0.97005 * 119.99634 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 2.3623 2.3974 -1.2036 5 17 2.1608 1.5567 -2.7089 6 6 2.6791 3.7421 -1.1991 7 6 2.8508 4.4792 -2.5022 8 6 2.8393 4.4123 0.0003 9 6 2.6827 3.7401 1.1983 10 6 2.3659 2.3955 1.2019 11 6 2.1961 1.6641 2.5086 12 6 3.5122 0.9811 2.8855 13 6 3.3422 0.2492 4.1918 14 1 2.3908 0.2696 4.7024 15 6 4.4013 -0.4465 4.7352 16 7 5.5601 -0.4709 4.1137 17 14 4.1908 -1.3531 6.3548 18 1 3.7371 -2.7419 6.0893 19 1 5.4885 -1.3857 7.0762 20 1 3.1796 -0.6524 7.1866 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.8924 4.4210 -2.8181 25 1 2.2147 4.0261 -3.2625 26 1 2.5695 5.5238 -2.3685 27 1 3.0866 5.4637 0.0009 28 1 2.8090 4.2669 2.1327 29 1 1.9184 2.3732 3.2884 30 1 1.4133 0.9127 2.4053 31 1 3.7899 0.2719 2.1056 32 1 4.2950 1.7324 2.9888 33 1 6.3054 -0.9601 4.4962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:50 Heat of formation + Delta-G solvation = -3.847198 kcal Electronic energy + Delta-G solvation = -16041.652456 eV Core-core repulsion = 13411.547655 eV Total energy + Delta-G solvation = -2630.104801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36752 -36.39704 -34.53335 -32.66173 -30.67502 -30.33479 -28.58830 -26.96083 -24.27270 -22.86648 -21.62002 -20.20526 -16.77198 -16.33874 -16.01812 -15.57001 -14.53338 -14.44627 -14.14724 -13.73111 -13.35315 -13.00770 -12.93175 -12.76943 -12.29122 -12.23643 -12.18216 -11.61833 -11.40578 -11.34035 -10.94586 -10.88203 -10.63086 -10.49785 -9.97682 -9.78233 -9.56481 -9.06832 -8.54429 -8.29126 -8.15670 -7.13240 -5.94374 -3.96585 1.04292 1.39176 1.98667 2.33787 2.97966 3.35437 3.41490 3.44021 3.77558 4.50015 4.80734 4.95388 5.23092 5.34477 5.36353 5.39130 5.41687 5.52478 5.57070 5.66992 5.79452 5.90138 6.09459 6.16273 6.29649 6.47229 6.61611 6.81218 6.86723 7.10439 7.72352 7.89495 8.06046 8.45225 9.09385 9.66401 11.16842 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.005447 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.727652 B = 5139.314340 C = 5670.672257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.112 6.112 3 C -0.118 4.118 4 C 0.008 3.992 5 Cl -0.060 7.060 6 C -0.108 4.108 7 C -0.112 4.112 8 C -0.084 4.084 9 C -0.124 4.124 10 C -0.004 4.004 11 C -0.083 4.083 12 C 0.035 3.965 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.101 0.899 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 8.362 -12.240 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.120 5.880 3 C -0.230 4.230 4 C -0.022 4.022 5 Cl -0.030 7.030 6 C -0.111 4.111 7 C -0.168 4.168 8 C -0.103 4.103 9 C -0.144 4.144 10 C -0.007 4.007 11 C -0.120 4.120 12 C -0.002 4.002 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.120 0.880 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.858 7.258 -12.367 16.352 hybrid contribution -0.701 0.548 0.796 1.193 sum -8.559 7.806 -11.571 16.373 Atomic orbital electron populations 1.23572 0.96488 1.06149 1.04663 1.85805 1.04567 1.00534 1.97076 1.21542 1.09762 0.98441 0.93211 1.21084 1.02441 0.92085 0.86621 1.98334 1.95530 1.77978 1.31200 1.19619 1.03039 0.91935 0.96488 1.20790 1.02671 0.99583 0.93798 1.21082 0.98105 0.99828 0.91255 1.21227 1.00632 0.94149 0.98384 1.20740 0.91207 0.93212 0.95544 1.21029 1.02989 0.98350 0.89679 1.19052 0.89316 0.95095 0.96715 1.21176 0.97124 1.31107 1.06051 0.92699 1.24990 0.95308 0.96580 0.97411 1.69978 1.01856 1.42460 1.39013 0.86627 0.77352 0.80293 0.83909 1.20641 1.21316 1.19942 0.88032 0.90480 0.91061 0.90966 0.91177 0.91417 0.85219 0.84956 0.92130 0.90906 0.95247 0.96930 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.72 101.05 1.08 -0.83 16 2 S -0.11 -2.01 19.09 -107.50 -2.05 -4.06 16 3 C -0.12 -2.11 5.70 -39.02 -0.22 -2.33 16 4 C 0.01 0.12 6.33 -39.30 -0.25 -0.13 16 5 Cl -0.06 -0.85 26.17 -51.86 -1.36 -2.20 16 6 C -0.11 -1.50 5.88 -104.62 -0.62 -2.12 16 7 C -0.11 -1.17 9.61 36.00 0.35 -0.82 16 8 C -0.08 -1.14 9.70 -39.54 -0.38 -1.52 16 9 C -0.12 -1.95 9.67 -39.61 -0.38 -2.34 16 10 C 0.00 -0.08 5.15 -104.41 -0.54 -0.62 16 11 C -0.08 -1.71 4.74 -27.88 -0.13 -1.85 16 12 C 0.04 0.92 4.95 -27.89 -0.14 0.78 16 13 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H 0.10 1.20 8.14 -51.92 -0.42 0.77 16 22 H 0.08 1.03 8.02 -51.92 -0.42 0.61 16 23 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.71 6.90 -51.93 -0.36 0.36 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 28 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 29 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 30 H 0.07 1.49 6.91 -51.93 -0.36 1.13 16 31 H 0.03 0.83 7.69 -51.93 -0.40 0.43 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -30.84 306.82 -9.16 -40.00 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.45 Total: -3.59 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -1.64 Total: -25.05 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.05 Total: -4.06 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.36 Total: -2.20 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.84 -9.16 -40.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.154 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds