Wall clock time and date at job start Mon Mar 30 2020 00:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76205 * 102.99742 * 2 1 4 4 C 1.39093 * 120.08319 * 270.23448 * 3 2 1 5 5 Cl 1.73592 * 120.05131 * 0.04190 * 4 3 2 6 6 C 1.38151 * 119.89584 * 180.29885 * 4 3 2 7 7 C 1.50697 * 119.96205 * 179.70058 * 6 4 3 8 8 C 1.38328 * 120.06760 * 359.72197 * 6 4 3 9 9 C 1.38262 * 120.17003 * 359.97438 * 8 6 4 10 10 C 1.38141 * 120.09758 * 0.02721 * 9 8 6 11 11 C 1.50706 * 120.03058 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47049 * 264.99829 * 11 10 9 13 13 C 1.50696 * 109.47088 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00371 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00350 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99521 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00352 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46915 * 90.00349 * 17 15 13 19 19 H 1.48505 * 109.47309 * 210.00137 * 17 15 13 20 20 H 1.48503 * 109.47240 * 330.00472 * 17 15 13 21 21 H 1.09005 * 109.47056 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47403 * 299.99557 * 1 2 3 23 23 H 1.09000 * 109.47736 * 60.00137 * 1 2 3 24 24 H 1.09001 * 109.47126 * 270.01760 * 7 6 4 25 25 H 1.08994 * 109.47420 * 30.02030 * 7 6 4 26 26 H 1.09005 * 109.47102 * 150.02170 * 7 6 4 27 27 H 1.08003 * 119.91277 * 180.02562 * 8 6 4 28 28 H 1.08005 * 119.95144 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.47087 * 25.00192 * 11 10 9 30 30 H 1.09005 * 109.46702 * 145.00049 * 11 10 9 31 31 H 1.09007 * 109.47360 * 299.99872 * 12 11 10 32 32 H 1.08997 * 109.47379 * 60.00219 * 12 11 10 33 33 H 0.97005 * 119.99634 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 2.3623 2.3974 -1.2036 5 17 2.1608 1.5567 -2.7089 6 6 2.6791 3.7421 -1.1991 7 6 2.8508 4.4792 -2.5022 8 6 2.8393 4.4123 0.0003 9 6 2.6827 3.7401 1.1983 10 6 2.3659 2.3955 1.2019 11 6 2.1961 1.6641 2.5086 12 6 3.5122 0.9811 2.8855 13 6 3.3422 0.2492 4.1918 14 1 2.3908 0.2696 4.7024 15 6 4.4013 -0.4465 4.7352 16 7 5.5601 -0.4709 4.1137 17 14 4.1908 -1.3531 6.3548 18 1 3.7371 -2.7419 6.0893 19 1 5.4885 -1.3857 7.0762 20 1 3.1796 -0.6524 7.1866 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 3.8924 4.4210 -2.8181 25 1 2.2147 4.0261 -3.2625 26 1 2.5695 5.5238 -2.3685 27 1 3.0866 5.4637 0.0009 28 1 2.8090 4.2669 2.1327 29 1 1.9184 2.3732 3.2884 30 1 1.4133 0.9127 2.4053 31 1 3.7899 0.2719 2.1056 32 1 4.2950 1.7324 2.9888 33 1 6.3054 -0.9601 4.4962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061852.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:50 Heat of formation + Delta-G solvation = -19.409571 kcal Electronic energy + Delta-G solvation = -16042.327291 eV Core-core repulsion = 13411.547655 eV Total energy + Delta-G solvation = -2630.779636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57085 -37.57728 -36.14146 -34.48199 -31.98683 -31.81916 -29.70389 -28.49932 -25.93925 -24.06917 -23.23822 -21.71012 -18.56533 -17.91402 -17.26006 -16.89153 -16.49850 -15.71211 -15.27124 -14.94707 -14.65095 -14.53091 -14.24604 -14.09413 -13.81650 -13.53533 -13.25217 -13.08787 -12.81200 -12.80540 -12.48887 -12.42164 -12.28462 -11.80085 -11.67031 -11.46309 -11.29701 -11.05647 -10.50564 -9.74085 -9.43629 -8.53111 -8.14930 -6.25657 -0.14668 0.17617 0.71993 1.16073 1.41664 1.43496 1.53950 1.76863 2.43245 2.56874 3.18579 3.70054 3.89087 4.15574 4.17504 4.28812 4.32655 4.34921 4.53697 4.73475 4.75561 4.80073 4.81796 4.88366 5.09943 5.15017 5.26078 5.33317 5.41556 5.54539 5.77314 5.83642 5.90344 6.27516 6.90597 7.42644 8.96882 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.005447 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.727652 B = 5139.314340 C = 5670.672257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.182 6.182 3 C -0.124 4.124 4 C -0.010 4.010 5 Cl -0.049 7.049 6 C -0.101 4.101 7 C -0.111 4.111 8 C -0.077 4.077 9 C -0.129 4.129 10 C -0.038 4.038 11 C -0.066 4.066 12 C 0.046 3.954 13 C -0.534 4.534 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.260 1.260 21 H 0.119 0.881 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.171 0.829 28 H 0.144 0.856 29 H 0.068 0.932 30 H 0.069 0.931 31 H -0.003 1.003 32 H -0.017 1.017 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 9.840 -12.551 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S 0.050 5.950 3 C -0.236 4.236 4 C -0.040 4.040 5 Cl -0.020 7.020 6 C -0.103 4.103 7 C -0.167 4.167 8 C -0.094 4.094 9 C -0.148 4.148 10 C -0.041 4.041 11 C -0.104 4.104 12 C 0.009 3.991 13 C -0.572 4.572 14 H 0.080 0.920 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.184 1.184 21 H 0.138 0.862 22 H 0.097 0.903 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.189 0.811 28 H 0.162 0.838 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.016 0.984 32 H 0.001 0.999 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.000 8.744 -12.684 17.843 hybrid contribution -0.362 0.130 0.784 0.874 sum -9.362 8.874 -11.900 17.550 Atomic orbital electron populations 1.23572 0.92271 1.07577 1.05388 1.85920 1.09254 1.02596 1.97269 1.21546 1.10479 0.97559 0.94027 1.21254 1.03170 0.93074 0.86481 1.98329 1.95495 1.78028 1.30159 1.20128 1.00626 0.91202 0.98342 1.20890 1.03308 1.00730 0.91783 1.21506 0.96405 1.01556 0.89982 1.21456 1.00020 0.93215 1.00130 1.20555 0.94550 0.94538 0.94444 1.20671 0.99762 0.98295 0.91647 1.18815 0.91373 0.93788 0.95157 1.21631 0.97436 1.31200 1.06933 0.91993 1.25945 0.94879 0.97504 1.01378 1.70126 1.02837 1.43571 1.41017 0.85484 0.77652 0.78946 0.79178 1.19996 1.20922 1.18435 0.86227 0.90329 0.89622 0.90107 0.90960 0.88600 0.81149 0.83803 0.91347 0.91209 0.98434 0.99854 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 10.72 113.37 1.22 -1.98 16 2 S -0.18 -6.73 19.09 -56.49 -1.08 -7.81 16 3 C -0.12 -4.49 5.70 22.63 0.13 -4.36 16 4 C -0.01 -0.31 6.33 22.45 0.14 -0.16 16 5 Cl -0.05 -1.36 26.17 -2.72 -0.07 -1.43 16 6 C -0.10 -2.54 5.88 -19.86 -0.12 -2.66 16 7 C -0.11 -1.92 9.61 71.24 0.68 -1.24 16 8 C -0.08 -1.84 9.70 22.30 0.22 -1.62 16 9 C -0.13 -3.90 9.67 22.25 0.22 -3.68 16 10 C -0.04 -1.42 5.15 -19.73 -0.10 -1.52 16 11 C -0.07 -2.81 4.74 29.85 0.14 -2.66 16 12 C 0.05 2.49 4.95 29.85 0.15 2.63 16 13 C -0.53 -30.76 9.11 25.60 0.23 -30.53 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 17 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 22 H 0.08 2.05 8.02 -2.39 -0.02 2.03 16 23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.25 6.90 -2.39 -0.02 1.24 16 26 H 0.10 1.16 8.09 -2.38 -0.02 1.14 16 27 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.07 2.70 8.05 -2.39 -0.02 2.69 16 30 H 0.07 2.93 6.91 -2.38 -0.02 2.92 16 31 H 0.00 -0.16 7.69 -2.38 -0.02 -0.18 16 32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 33 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -68.86 306.82 5.62 -63.24 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.09 Total: 4.52 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 3.37 Total: -47.30 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.28 Total: -58.17 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: -6.73 SS G_CDS: -1.08 Total: -7.81 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -68.86 5.62 -63.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061852.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.828 kcal (2) G-P(sol) polarization free energy of solvation -68.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds