Wall clock time and date at job start Mon Mar 30 2020 00:58:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 C 1.76205 * 102.99742 * 2 1
4 4 C 1.39093 * 120.08319 * 270.23448 * 3 2 1
5 5 Cl 1.73592 * 120.05131 * 0.04190 * 4 3 2
6 6 C 1.38151 * 119.89584 * 180.29885 * 4 3 2
7 7 C 1.50697 * 119.96205 * 179.70058 * 6 4 3
8 8 C 1.38328 * 120.06760 * 359.72197 * 6 4 3
9 9 C 1.38262 * 120.17003 * 359.97438 * 8 6 4
10 10 C 1.38141 * 120.09758 * 0.02721 * 9 8 6
11 11 C 1.50706 * 120.03058 * 179.97438 * 10 9 8
12 12 C 1.52995 * 109.47049 * 264.99829 * 11 10 9
13 13 C 1.50696 * 109.47088 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00371 * 359.97438 * 13 12 11
15 15 C 1.37877 * 120.00350 * 179.97438 * 13 12 11
16 16 N 1.31518 * 119.99521 * 0.02562 * 15 13 12
17 17 Si 1.86800 * 120.00352 * 179.97438 * 15 13 12
18 18 H 1.48503 * 109.46915 * 90.00349 * 17 15 13
19 19 H 1.48505 * 109.47309 * 210.00137 * 17 15 13
20 20 H 1.48503 * 109.47240 * 330.00472 * 17 15 13
21 21 H 1.09005 * 109.47056 * 179.97438 * 1 2 3
22 22 H 1.09003 * 109.47403 * 299.99557 * 1 2 3
23 23 H 1.09000 * 109.47736 * 60.00137 * 1 2 3
24 24 H 1.09001 * 109.47126 * 270.01760 * 7 6 4
25 25 H 1.08994 * 109.47420 * 30.02030 * 7 6 4
26 26 H 1.09005 * 109.47102 * 150.02170 * 7 6 4
27 27 H 1.08003 * 119.91277 * 180.02562 * 8 6 4
28 28 H 1.08005 * 119.95144 * 179.97438 * 9 8 6
29 29 H 1.08998 * 109.47087 * 25.00192 * 11 10 9
30 30 H 1.09005 * 109.46702 * 145.00049 * 11 10 9
31 31 H 1.09007 * 109.47360 * 299.99872 * 12 11 10
32 32 H 1.08997 * 109.47379 * 60.00219 * 12 11 10
33 33 H 0.97005 * 119.99634 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 2.3623 2.3974 -1.2036
5 17 2.1608 1.5567 -2.7089
6 6 2.6791 3.7421 -1.1991
7 6 2.8508 4.4792 -2.5022
8 6 2.8393 4.4123 0.0003
9 6 2.6827 3.7401 1.1983
10 6 2.3659 2.3955 1.2019
11 6 2.1961 1.6641 2.5086
12 6 3.5122 0.9811 2.8855
13 6 3.3422 0.2492 4.1918
14 1 2.3908 0.2696 4.7024
15 6 4.4013 -0.4465 4.7352
16 7 5.5601 -0.4709 4.1137
17 14 4.1908 -1.3531 6.3548
18 1 3.7371 -2.7419 6.0893
19 1 5.4885 -1.3857 7.0762
20 1 3.1796 -0.6524 7.1866
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 3.8924 4.4210 -2.8181
25 1 2.2147 4.0261 -3.2625
26 1 2.5695 5.5238 -2.3685
27 1 3.0866 5.4637 0.0009
28 1 2.8090 4.2669 2.1327
29 1 1.9184 2.3732 3.2884
30 1 1.4133 0.9127 2.4053
31 1 3.7899 0.2719 2.1056
32 1 4.2950 1.7324 2.9888
33 1 6.3054 -0.9601 4.4962
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001250061852.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:58:50
Heat of formation + Delta-G solvation = -19.409571 kcal
Electronic energy + Delta-G solvation = -16042.327291 eV
Core-core repulsion = 13411.547655 eV
Total energy + Delta-G solvation = -2630.779636 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 270.054 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.57085 -37.57728 -36.14146 -34.48199 -31.98683 -31.81916 -29.70389 -28.49932
-25.93925 -24.06917 -23.23822 -21.71012 -18.56533 -17.91402 -17.26006 -16.89153
-16.49850 -15.71211 -15.27124 -14.94707 -14.65095 -14.53091 -14.24604 -14.09413
-13.81650 -13.53533 -13.25217 -13.08787 -12.81200 -12.80540 -12.48887 -12.42164
-12.28462 -11.80085 -11.67031 -11.46309 -11.29701 -11.05647 -10.50564 -9.74085
-9.43629 -8.53111 -8.14930 -6.25657 -0.14668 0.17617 0.71993 1.16073
1.41664 1.43496 1.53950 1.76863 2.43245 2.56874 3.18579 3.70054
3.89087 4.15574 4.17504 4.28812 4.32655 4.34921 4.53697 4.73475
4.75561 4.80073 4.81796 4.88366 5.09943 5.15017 5.26078 5.33317
5.41556 5.54539 5.77314 5.83642 5.90344 6.27516 6.90597 7.42644
8.96882
Molecular weight = 270.05amu
Principal moments of inertia in cm(-1)
A = 0.024911 B = 0.005447 C = 0.004937
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1123.727652 B = 5139.314340 C = 5670.672257
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 S -0.182 6.182
3 C -0.124 4.124
4 C -0.010 4.010
5 Cl -0.049 7.049
6 C -0.101 4.101
7 C -0.111 4.111
8 C -0.077 4.077
9 C -0.129 4.129
10 C -0.038 4.038
11 C -0.066 4.066
12 C 0.046 3.954
13 C -0.534 4.534
14 H 0.062 0.938
15 C 0.000 4.000
16 N -0.935 5.935
17 Si 0.963 3.037
18 H -0.274 1.274
19 H -0.284 1.284
20 H -0.260 1.260
21 H 0.119 0.881
22 H 0.078 0.922
23 H 0.085 0.915
24 H 0.080 0.920
25 H 0.072 0.928
26 H 0.095 0.905
27 H 0.171 0.829
28 H 0.144 0.856
29 H 0.068 0.932
30 H 0.069 0.931
31 H -0.003 1.003
32 H -0.017 1.017
33 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.790 9.840 -12.551 18.713
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.288 4.288
2 S 0.050 5.950
3 C -0.236 4.236
4 C -0.040 4.040
5 Cl -0.020 7.020
6 C -0.103 4.103
7 C -0.167 4.167
8 C -0.094 4.094
9 C -0.148 4.148
10 C -0.041 4.041
11 C -0.104 4.104
12 C 0.009 3.991
13 C -0.572 4.572
14 H 0.080 0.920
15 C -0.197 4.197
16 N -0.576 5.576
17 Si 0.787 3.213
18 H -0.200 1.200
19 H -0.209 1.209
20 H -0.184 1.184
21 H 0.138 0.862
22 H 0.097 0.903
23 H 0.104 0.896
24 H 0.099 0.901
25 H 0.090 0.910
26 H 0.114 0.886
27 H 0.189 0.811
28 H 0.162 0.838
29 H 0.087 0.913
30 H 0.088 0.912
31 H 0.016 0.984
32 H 0.001 0.999
33 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -9.000 8.744 -12.684 17.843
hybrid contribution -0.362 0.130 0.784 0.874
sum -9.362 8.874 -11.900 17.550
Atomic orbital electron populations
1.23572 0.92271 1.07577 1.05388 1.85920 1.09254 1.02596 1.97269
1.21546 1.10479 0.97559 0.94027 1.21254 1.03170 0.93074 0.86481
1.98329 1.95495 1.78028 1.30159 1.20128 1.00626 0.91202 0.98342
1.20890 1.03308 1.00730 0.91783 1.21506 0.96405 1.01556 0.89982
1.21456 1.00020 0.93215 1.00130 1.20555 0.94550 0.94538 0.94444
1.20671 0.99762 0.98295 0.91647 1.18815 0.91373 0.93788 0.95157
1.21631 0.97436 1.31200 1.06933 0.91993 1.25945 0.94879 0.97504
1.01378 1.70126 1.02837 1.43571 1.41017 0.85484 0.77652 0.78946
0.79178 1.19996 1.20922 1.18435 0.86227 0.90329 0.89622 0.90107
0.90960 0.88600 0.81149 0.83803 0.91347 0.91209 0.98434 0.99854
0.92968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.19 10.72 113.37 1.22 -1.98 16
2 S -0.18 -6.73 19.09 -56.49 -1.08 -7.81 16
3 C -0.12 -4.49 5.70 22.63 0.13 -4.36 16
4 C -0.01 -0.31 6.33 22.45 0.14 -0.16 16
5 Cl -0.05 -1.36 26.17 -2.72 -0.07 -1.43 16
6 C -0.10 -2.54 5.88 -19.86 -0.12 -2.66 16
7 C -0.11 -1.92 9.61 71.24 0.68 -1.24 16
8 C -0.08 -1.84 9.70 22.30 0.22 -1.62 16
9 C -0.13 -3.90 9.67 22.25 0.22 -3.68 16
10 C -0.04 -1.42 5.15 -19.73 -0.10 -1.52 16
11 C -0.07 -2.81 4.74 29.85 0.14 -2.66 16
12 C 0.05 2.49 4.95 29.85 0.15 2.63 16
13 C -0.53 -30.76 9.11 25.60 0.23 -30.53 16
14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16
15 C 0.00 0.02 5.46 84.65 0.46 0.48 16
16 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16
17 Si 0.96 44.92 29.54 68.60 2.03 46.95 16
18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16
19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16
20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16
21 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16
22 H 0.08 2.05 8.02 -2.39 -0.02 2.03 16
23 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
25 H 0.07 1.25 6.90 -2.39 -0.02 1.24 16
26 H 0.10 1.16 8.09 -2.38 -0.02 1.14 16
27 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16
28 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16
29 H 0.07 2.70 8.05 -2.39 -0.02 2.69 16
30 H 0.07 2.93 6.91 -2.38 -0.02 2.92 16
31 H 0.00 -0.16 7.69 -2.38 -0.02 -0.18 16
32 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
33 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16
Total: -1.00 -68.86 306.82 5.62 -63.24
By element:
Atomic # 1 Polarization: 3.43 SS G_CDS: 1.09 Total: 4.52 kcal
Atomic # 6 Polarization: -50.67 SS G_CDS: 3.37 Total: -47.30 kcal
Atomic # 7 Polarization: -58.46 SS G_CDS: 0.28 Total: -58.17 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal
Atomic # 16 Polarization: -6.73 SS G_CDS: -1.08 Total: -7.81 kcal
Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal
Total: -68.86 5.62 -63.24 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001250061852.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.828 kcal
(2) G-P(sol) polarization free energy of solvation -68.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds