Wall clock time and date at job start Mon Mar 30 2020 01:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76198 * 103.00098 * 2 1 4 4 C 1.38945 * 120.08751 * 0.02562 * 3 2 1 5 5 C 1.38095 * 119.93887 * 179.74406 * 4 3 2 6 6 C 1.38313 * 120.09367 * 0.48976 * 5 4 3 7 7 C 1.50703 * 119.91433 * 179.76615 * 6 5 4 8 8 C 1.52996 * 109.46946 * 269.72523 * 7 6 5 9 9 C 1.52997 * 109.46947 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.38291 * 120.16834 * 359.48613 * 6 5 4 19 19 C 1.38186 * 120.06539 * 0.28341 * 18 6 5 20 20 Cl 1.73602 * 120.04817 * 179.97438 * 19 18 6 21 21 H 1.09000 * 109.47100 * 59.99502 * 1 2 3 22 22 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46946 * 300.00040 * 1 2 3 24 24 H 1.08007 * 120.03058 * 359.97438 * 4 3 2 25 25 H 1.07990 * 119.95278 * 180.23437 * 5 4 3 26 26 H 1.08992 * 109.46894 * 149.72242 * 7 6 5 27 27 H 1.08996 * 109.46805 * 29.72392 * 7 6 5 28 28 H 1.09001 * 109.47372 * 60.00128 * 8 7 6 29 29 H 1.09004 * 109.47108 * 299.99872 * 8 7 6 30 30 H 1.09001 * 109.46832 * 59.99979 * 9 8 7 31 31 H 1.09000 * 109.47611 * 300.00276 * 9 8 7 32 32 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 33 33 H 1.08001 * 119.96284 * 180.25585 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1957 2.6660 0.0005 5 6 1.5098 4.0107 0.0059 6 6 2.8329 4.4139 0.0005 7 6 3.1711 5.8824 0.0010 8 6 3.2858 6.3798 -1.4413 9 6 3.6285 7.8709 -1.4408 10 6 3.7421 8.3608 -2.8614 11 1 3.5851 7.6771 -3.6825 12 6 4.0464 9.6818 -3.1129 13 7 4.2381 10.5143 -2.1129 14 14 4.1865 10.2891 -4.8739 15 1 2.8593 10.7643 -5.3407 16 1 5.1624 11.4068 -4.9359 17 1 4.6493 9.1791 -5.7450 18 6 3.8462 3.4727 0.0004 19 6 3.5395 2.1253 -0.0001 20 17 4.8119 0.9443 -0.0009 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.1621 2.3524 0.0005 25 1 0.7213 4.7486 0.0101 26 1 4.1198 6.0366 0.5150 27 1 2.3853 6.4360 0.5149 28 1 2.3370 6.2257 -1.9554 29 1 4.0716 5.8262 -1.9552 30 1 4.5771 8.0255 -0.9266 31 1 2.8424 8.4243 -0.9270 32 1 4.4519 11.4438 -2.2899 33 1 4.8782 3.7912 0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:44 Heat of formation + Delta-G solvation = -11.375843 kcal Electronic energy + Delta-G solvation = -15306.844465 eV Core-core repulsion = 12676.413198 eV Total energy + Delta-G solvation = -2630.431267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42552 -36.59355 -34.81033 -32.73863 -31.13722 -30.43453 -29.12606 -26.92834 -23.85896 -22.77781 -21.43428 -20.08994 -17.95887 -16.43835 -16.03838 -15.73003 -14.97847 -14.51033 -14.24993 -14.20224 -13.82288 -13.61488 -13.50400 -12.76549 -12.41620 -12.27380 -11.82295 -11.60103 -11.44654 -11.19280 -11.06585 -10.78329 -10.75058 -10.52988 -10.30989 -9.71966 -9.70934 -9.27060 -9.02710 -8.87961 -8.35259 -7.49398 -6.00449 -4.02753 1.02470 1.15243 1.27588 1.99551 2.27873 3.31744 3.38073 3.41769 3.50713 4.45890 4.61021 4.76144 4.77207 4.91311 5.12495 5.25173 5.35273 5.36267 5.38121 5.57467 5.84698 5.97415 5.99754 6.11207 6.28546 6.43010 6.72397 6.79212 6.84543 7.10184 7.66819 7.80621 7.99601 8.42351 9.04412 9.61486 11.10806 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.003462 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.416325 B = 8086.520028 C = 8385.907244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.099 6.099 3 C -0.096 4.096 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.053 4.053 7 C -0.085 4.085 8 C -0.103 4.103 9 C 0.020 3.980 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.093 4.093 19 C -0.016 4.016 20 Cl -0.061 7.061 21 H 0.084 0.916 22 H 0.107 0.893 23 H 0.083 0.917 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 -19.967 6.803 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.142 5.858 3 C -0.210 4.210 4 C -0.144 4.144 5 C -0.116 4.116 6 C -0.055 4.055 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.017 4.017 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.113 4.113 19 C -0.049 4.049 20 Cl -0.032 7.032 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.102 0.898 24 H 0.147 0.853 25 H 0.151 0.849 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.611 -20.967 6.841 22.758 hybrid contribution -0.662 1.466 -0.992 1.890 sum -6.273 -19.502 5.849 21.304 Atomic orbital electron populations 1.23734 0.95624 1.06999 1.05712 1.85649 1.05480 1.02118 1.92536 1.21505 0.94541 0.97494 1.07414 1.21079 0.97768 0.92892 1.02661 1.21114 0.96577 0.95130 0.98774 1.20236 0.92381 0.96873 0.96059 1.20848 1.02304 0.88746 1.00370 1.21646 1.00606 0.99837 0.92019 1.19122 0.96838 0.88664 0.97029 1.21262 1.47498 0.94533 0.92590 0.92723 1.25022 0.95427 0.97012 0.97004 1.69967 1.48508 1.04467 1.30602 0.86608 0.77860 0.78490 0.85148 1.20678 1.21212 1.19861 1.20973 1.00702 0.89693 0.99958 1.20362 0.87436 0.90413 1.06648 1.98361 1.50455 1.57553 1.96812 0.89683 0.87446 0.89755 0.85285 0.84929 0.90947 0.90907 0.93237 0.93170 0.96511 0.96558 0.93016 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.15 101.05 0.92 -0.14 16 2 S -0.10 -1.08 21.47 -107.50 -2.31 -3.38 16 3 C -0.10 -1.23 6.11 -39.02 -0.24 -1.46 16 4 C -0.12 -1.41 9.36 -39.37 -0.37 -1.78 16 5 C -0.10 -1.23 9.69 -39.61 -0.38 -1.61 16 6 C -0.05 -0.76 5.14 -104.57 -0.54 -1.30 16 7 C -0.09 -1.37 5.34 -27.88 -0.15 -1.52 16 8 C -0.10 -2.07 5.13 -26.73 -0.14 -2.20 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.09 -1.31 9.47 -39.58 -0.38 -1.68 16 19 C -0.02 -0.22 6.34 -39.30 -0.25 -0.47 16 20 Cl -0.06 -0.78 27.84 -51.86 -1.44 -2.23 16 21 H 0.08 0.56 7.75 -51.92 -0.40 0.16 16 22 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.53 7.75 -51.92 -0.40 0.13 16 24 H 0.13 1.17 5.88 -52.48 -0.31 0.86 16 25 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 26 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 27 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -30.28 309.15 -9.89 -40.17 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -4.45 Total: -4.45 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -2.06 Total: -25.30 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.31 Total: -3.38 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.44 Total: -2.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.28 -9.89 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.798 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds