Wall clock time and date at job start Mon Mar 30 2020 01:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76198 * 103.00098 * 2 1 4 4 C 1.38945 * 120.08751 * 0.02562 * 3 2 1 5 5 C 1.38095 * 119.93887 * 179.74406 * 4 3 2 6 6 C 1.38313 * 120.09367 * 0.48976 * 5 4 3 7 7 C 1.50703 * 119.91433 * 179.76615 * 6 5 4 8 8 C 1.52996 * 109.46946 * 269.72523 * 7 6 5 9 9 C 1.52997 * 109.46947 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.38291 * 120.16834 * 359.48613 * 6 5 4 19 19 C 1.38186 * 120.06539 * 0.28341 * 18 6 5 20 20 Cl 1.73602 * 120.04817 * 179.97438 * 19 18 6 21 21 H 1.09000 * 109.47100 * 59.99502 * 1 2 3 22 22 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46946 * 300.00040 * 1 2 3 24 24 H 1.08007 * 120.03058 * 359.97438 * 4 3 2 25 25 H 1.07990 * 119.95278 * 180.23437 * 5 4 3 26 26 H 1.08992 * 109.46894 * 149.72242 * 7 6 5 27 27 H 1.08996 * 109.46805 * 29.72392 * 7 6 5 28 28 H 1.09001 * 109.47372 * 60.00128 * 8 7 6 29 29 H 1.09004 * 109.47108 * 299.99872 * 8 7 6 30 30 H 1.09001 * 109.46832 * 59.99979 * 9 8 7 31 31 H 1.09000 * 109.47611 * 300.00276 * 9 8 7 32 32 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 33 33 H 1.08001 * 119.96284 * 180.25585 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1957 2.6660 0.0005 5 6 1.5098 4.0107 0.0059 6 6 2.8329 4.4139 0.0005 7 6 3.1711 5.8824 0.0010 8 6 3.2858 6.3798 -1.4413 9 6 3.6285 7.8709 -1.4408 10 6 3.7421 8.3608 -2.8614 11 1 3.5851 7.6771 -3.6825 12 6 4.0464 9.6818 -3.1129 13 7 4.2381 10.5143 -2.1129 14 14 4.1865 10.2891 -4.8739 15 1 2.8593 10.7643 -5.3407 16 1 5.1624 11.4068 -4.9359 17 1 4.6493 9.1791 -5.7450 18 6 3.8462 3.4727 0.0004 19 6 3.5395 2.1253 -0.0001 20 17 4.8119 0.9443 -0.0009 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.1621 2.3524 0.0005 25 1 0.7213 4.7486 0.0101 26 1 4.1198 6.0366 0.5150 27 1 2.3853 6.4360 0.5149 28 1 2.3370 6.2257 -1.9554 29 1 4.0716 5.8262 -1.9552 30 1 4.5771 8.0255 -0.9266 31 1 2.8424 8.4243 -0.9270 32 1 4.4519 11.4438 -2.2899 33 1 4.8782 3.7912 0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066324.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:43 Heat of formation + Delta-G solvation = -25.690540 kcal Electronic energy + Delta-G solvation = -15307.465197 eV Core-core repulsion = 12676.413198 eV Total energy + Delta-G solvation = -2631.051999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44607 -37.61602 -36.41529 -34.56762 -32.27984 -31.78541 -29.76510 -28.55848 -25.57909 -23.75084 -22.84631 -21.67975 -18.89926 -18.44301 -17.14521 -16.84046 -16.48313 -15.89349 -15.39081 -15.10224 -15.00381 -14.77112 -14.37639 -14.17372 -13.87089 -13.42933 -13.18416 -12.88065 -12.76946 -12.72992 -12.38586 -12.34794 -12.28454 -12.01706 -11.44889 -11.34426 -11.24117 -11.07801 -10.54032 -10.48691 -9.86741 -8.38760 -8.18854 -6.29962 0.00584 0.16360 0.46257 1.07648 1.40297 1.41328 1.49000 1.52537 2.40995 2.49313 3.13865 3.68272 3.79906 4.13969 4.19236 4.29056 4.31585 4.32227 4.45828 4.54240 4.68868 4.82689 4.87833 4.96834 5.02917 5.10702 5.25581 5.27342 5.54446 5.54779 5.70978 5.79907 5.88570 6.27224 6.87231 7.39209 8.92277 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.003462 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.416325 B = 8086.520028 C = 8385.907244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.126 6.126 3 C -0.099 4.099 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.069 4.069 7 C -0.074 4.074 8 C -0.089 4.089 9 C 0.023 3.977 10 C -0.544 4.544 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.265 1.265 18 C -0.102 4.102 19 C -0.032 4.032 20 Cl -0.060 7.060 21 H 0.093 0.907 22 H 0.127 0.873 23 H 0.096 0.904 24 H 0.160 0.840 25 H 0.149 0.851 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.045 0.955 30 H -0.007 1.007 31 H -0.004 1.004 32 H 0.263 0.737 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 -21.237 6.138 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.116 5.884 3 C -0.212 4.212 4 C -0.140 4.140 5 C -0.116 4.116 6 C -0.072 4.072 7 C -0.111 4.111 8 C -0.127 4.127 9 C -0.014 4.014 10 C -0.582 4.582 11 H 0.075 0.925 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.787 3.213 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.122 4.122 19 C -0.065 4.065 20 Cl -0.031 7.031 21 H 0.112 0.888 22 H 0.146 0.854 23 H 0.115 0.885 24 H 0.177 0.823 25 H 0.166 0.834 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.173 -22.262 6.178 24.192 hybrid contribution -0.227 1.772 -0.747 1.937 sum -7.400 -20.490 5.432 22.452 Atomic orbital electron populations 1.23870 0.91886 1.08700 1.06736 1.85770 1.09604 1.00843 1.92140 1.21781 0.94387 0.98855 1.06165 1.21401 0.99026 0.92138 1.01462 1.21339 0.96184 0.96178 0.97877 1.20035 0.93383 0.95479 0.98296 1.20619 1.02616 0.90337 0.97546 1.21404 1.00301 0.96059 0.94932 1.19039 0.94916 0.92119 0.95344 1.21721 1.47478 0.95074 0.93932 0.92498 1.25951 0.94924 0.97265 1.01624 1.70092 1.49303 1.04887 1.33001 0.85492 0.78214 0.78022 0.79612 1.19651 1.20722 1.18961 1.21016 1.00764 0.90132 1.00244 1.20485 0.88185 0.90332 1.07514 1.98353 1.50507 1.57395 1.96845 0.88791 0.85430 0.88515 0.82283 0.83362 0.91144 0.90265 0.92970 0.93638 0.98883 0.98517 0.92776 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.15 113.37 1.04 -0.47 16 2 S -0.13 -2.47 21.47 -56.49 -1.21 -3.68 16 3 C -0.10 -2.34 6.11 22.63 0.14 -2.20 16 4 C -0.12 -2.43 9.36 22.41 0.21 -2.22 16 5 C -0.10 -2.27 9.69 22.25 0.22 -2.06 16 6 C -0.07 -1.93 5.14 -19.83 -0.10 -2.03 16 7 C -0.07 -2.37 5.34 29.85 0.16 -2.21 16 8 C -0.09 -3.60 5.13 30.59 0.16 -3.44 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 11 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 12 C 0.00 0.00 5.46 84.65 0.46 0.47 16 13 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 14 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 C -0.10 -2.83 9.47 22.27 0.21 -2.62 16 19 C -0.03 -0.87 6.34 22.45 0.14 -0.72 16 20 Cl -0.06 -1.52 27.84 -2.72 -0.08 -1.60 16 21 H 0.09 0.87 7.75 -2.39 -0.02 0.86 16 22 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.10 0.83 7.75 -2.39 -0.02 0.81 16 24 H 0.16 2.27 5.88 -2.91 -0.02 2.25 16 25 H 0.15 2.98 8.06 -2.92 -0.02 2.95 16 26 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 27 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -65.25 309.15 5.13 -60.13 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.09 Total: 2.23 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 3.01 Total: -47.05 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.44 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -1.21 Total: -3.68 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -65.25 5.13 -60.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066324.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.435 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds