Wall clock time and date at job start Mon Mar 30 2020 01:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99967 * 2 1 4 4 C 1.38983 * 120.06573 * 359.72365 * 3 2 1 5 5 C 1.38062 * 119.92824 * 179.74585 * 4 3 2 6 6 C 1.38415 * 120.06757 * 0.55381 * 5 4 3 7 7 Cl 1.73603 * 119.93173 * 179.72150 * 6 5 4 8 8 C 1.38375 * 120.13683 * 359.69913 * 6 5 4 9 9 C 1.38103 * 120.06569 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.03679 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47064 * 265.01960 * 10 9 8 12 12 C 1.52996 * 109.47559 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47479 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99864 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00311 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99998 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99879 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47293 * 89.99711 * 17 15 13 19 19 H 1.48500 * 109.46854 * 209.99920 * 17 15 13 20 20 H 1.48506 * 109.46779 * 329.99570 * 17 15 13 21 21 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47089 * 299.99885 * 1 2 3 23 23 H 1.09004 * 109.47568 * 59.99895 * 1 2 3 24 24 H 1.08003 * 120.03208 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.96078 * 180.25416 * 5 4 3 26 26 H 1.07993 * 119.96912 * 180.02562 * 8 6 5 27 27 H 1.09002 * 109.47326 * 25.01588 * 10 9 8 28 28 H 1.08999 * 109.47935 * 145.01821 * 10 9 8 29 29 H 1.09002 * 109.46746 * 299.99984 * 11 10 9 30 30 H 1.08999 * 109.46858 * 59.99202 * 11 10 9 31 31 H 1.08994 * 109.47216 * 300.00182 * 12 11 10 32 32 H 1.09007 * 109.46747 * 59.99709 * 12 11 10 33 33 H 0.97007 * 119.99769 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1950 2.6659 -0.0058 5 6 1.5088 4.0104 -0.0005 6 6 2.8329 4.4135 -0.0010 7 17 3.2234 6.1051 -0.0016 8 6 3.8461 3.4710 -0.0005 9 6 3.5386 2.1247 -0.0001 10 6 4.6424 1.0988 -0.0001 11 6 4.9304 0.6595 -1.4372 12 6 6.0515 -0.3815 -1.4375 13 6 6.3346 -0.8146 -2.8528 14 1 5.7715 -0.3895 -3.6705 15 6 7.3125 -1.7535 -3.1039 16 7 7.5592 -2.1318 -4.3391 17 14 8.2860 -2.4894 -1.6896 18 1 7.5945 -3.7059 -1.1927 19 1 9.6469 -2.8513 -2.1609 20 1 8.3906 -1.4957 -0.5909 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 0.1616 2.3519 -0.0099 25 1 0.7201 4.7483 -0.0008 26 1 4.8782 3.7886 -0.0004 27 1 5.5427 1.5337 0.4341 28 1 4.3357 0.2348 0.5893 29 1 4.0301 0.2246 -1.8714 30 1 5.2371 1.5236 -2.0267 31 1 6.9516 0.0537 -1.0034 32 1 5.7450 -1.2456 -0.8478 33 1 8.2470 -2.7927 -4.5157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250067142.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:42 Heat of formation + Delta-G solvation = -5.957104 kcal Electronic energy + Delta-G solvation = -15623.529658 eV Core-core repulsion = 12993.333365 eV Total energy + Delta-G solvation = -2630.196293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.46577 -36.61589 -34.92816 -32.65862 -31.24989 -30.64755 -28.95600 -27.22932 -23.68380 -22.97918 -21.26717 -20.03762 -17.68072 -16.69752 -16.29449 -15.99717 -14.72705 -14.49067 -14.21015 -14.09924 -13.85245 -13.52860 -13.24405 -12.79952 -12.70373 -12.24005 -11.98938 -11.82286 -11.60921 -11.42943 -11.04148 -10.91873 -10.71762 -10.21996 -9.86685 -9.74262 -9.65456 -9.42857 -9.14990 -8.83004 -8.48693 -7.35428 -5.99238 -3.96625 0.93979 1.18377 1.46482 2.05362 2.39214 3.34464 3.41479 3.44150 3.45402 4.49786 4.61020 4.68797 4.89395 4.91828 5.07561 5.22915 5.32955 5.35488 5.50190 5.60036 5.76113 5.89297 5.93709 6.09694 6.21332 6.25815 6.61403 6.67232 6.71816 6.96825 7.37211 7.49544 7.84881 8.60045 9.06469 9.63608 11.14443 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.004898 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.293982 B = 5714.708573 C = 6809.647995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.077 6.077 3 C -0.085 4.085 4 C -0.122 4.122 5 C -0.104 4.104 6 C -0.037 4.037 7 Cl -0.076 7.076 8 C -0.092 4.092 9 C -0.036 4.036 10 C -0.090 4.090 11 C -0.095 4.095 12 C -0.013 4.013 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.108 0.892 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.012 0.988 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 11.052 12.041 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.168 5.832 3 C -0.198 4.198 4 C -0.147 4.147 5 C -0.124 4.124 6 C -0.067 4.067 7 Cl -0.047 7.047 8 C -0.113 4.113 9 C -0.042 4.042 10 C -0.128 4.128 11 C -0.133 4.133 12 C -0.050 4.050 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.545 5.545 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.126 0.874 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.903 9.985 11.933 20.866 hybrid contribution -0.305 0.880 0.564 1.089 sum -14.208 10.865 12.497 21.819 Atomic orbital electron populations 1.23783 0.96725 1.07099 1.05289 1.86093 1.04200 1.01576 1.91380 1.21821 0.96032 0.97470 1.04517 1.21043 0.98402 0.92203 1.03026 1.20811 0.94592 0.95825 1.01180 1.20862 0.94537 0.84771 1.06492 1.98359 1.94536 1.14830 1.97025 1.20940 0.99201 0.91158 0.99981 1.19746 0.93035 0.94180 0.97192 1.20899 0.94977 0.96122 1.00758 1.21450 1.00346 0.99575 0.91924 1.19575 0.93613 0.93953 0.97860 1.21148 1.19361 1.23082 0.91906 0.91079 1.25026 0.96828 0.96271 0.95390 1.69924 1.33134 1.32418 1.19017 0.86789 0.79454 0.79889 0.83235 1.20287 1.21480 1.18996 0.87380 0.90070 0.89803 0.85211 0.85032 0.84371 0.90780 0.90491 0.91944 0.92737 0.96712 0.96956 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.15 101.05 0.92 -0.46 16 2 S -0.08 -1.01 20.46 -107.50 -2.20 -3.21 16 3 C -0.09 -1.16 6.11 -39.05 -0.24 -1.40 16 4 C -0.12 -1.40 9.36 -39.37 -0.37 -1.77 16 5 C -0.10 -1.16 9.82 -39.58 -0.39 -1.55 16 6 C -0.04 -0.46 6.32 -39.47 -0.25 -0.71 16 7 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.36 16 8 C -0.09 -1.25 9.46 -39.58 -0.37 -1.62 16 9 C -0.04 -0.52 5.15 -104.41 -0.54 -1.06 16 10 C -0.09 -1.46 4.81 -27.88 -0.13 -1.60 16 11 C -0.10 -1.91 5.14 -26.73 -0.14 -2.05 16 12 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 13 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 14 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.33 13.96 55.43 0.77 -27.56 16 17 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 21 H 0.11 0.80 8.14 -51.92 -0.42 0.37 16 22 H 0.08 0.59 7.76 -51.92 -0.40 0.18 16 23 H 0.08 0.67 7.74 -51.92 -0.40 0.26 16 24 H 0.13 1.15 5.88 -52.48 -0.31 0.84 16 25 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 28 H 0.08 1.25 7.01 -51.93 -0.36 0.88 16 29 H 0.06 1.29 7.73 -51.93 -0.40 0.89 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 32 H 0.01 0.29 7.57 -51.92 -0.39 -0.10 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -31.19 303.72 -9.41 -40.59 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.34 Total: -3.25 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -2.05 Total: -26.10 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -2.20 Total: -3.21 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.19 -9.41 -40.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250067142.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.637 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds