Wall clock time and date at job start Mon Mar 30 2020 00:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00361 * 2 1 4 4 H 1.48502 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47222 * 300.00542 * 3 2 1 6 6 H 1.48503 * 109.46805 * 60.00141 * 3 2 1 7 7 C 1.37882 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47042 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47046 * 179.97438 * 10 9 7 12 12 C 1.34782 * 120.00169 * 179.97438 * 11 10 9 13 13 O 1.21618 * 119.99695 * 0.02562 * 12 11 10 14 14 C 1.47288 * 119.99833 * 179.97438 * 12 11 10 15 15 C 1.38006 * 120.87672 * 0.02562 * 14 12 11 16 16 N 1.34318 * 120.39115 * 179.72028 * 15 14 12 17 17 H 0.96999 * 118.79922 * 180.27850 * 16 15 14 18 18 C 1.35639 * 122.38960 * 0.25793 * 16 15 14 19 19 C 1.34939 * 121.78269 * 0.02562 * 18 16 15 20 20 Cl 1.73601 * 120.33801 * 180.02562 * 19 18 16 21 21 C 1.41744 * 119.32071 * 359.97438 * 19 18 16 22 22 O 1.22091 * 121.06788 * 179.97438 * 21 19 18 23 23 H 0.97002 * 119.99835 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47119 * 59.99865 * 9 7 2 25 25 H 1.08997 * 109.46749 * 300.00117 * 9 7 2 26 26 H 1.09001 * 109.47241 * 59.99979 * 10 9 7 27 27 H 1.08995 * 109.46974 * 299.99802 * 10 9 7 28 28 H 0.97001 * 120.00134 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.80708 * 0.02562 * 15 14 12 30 30 H 1.08004 * 119.10823 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 7 1.5126 -4.9308 -0.0012 12 6 2.1864 -6.0981 -0.0027 13 8 3.4026 -6.0981 -0.0040 14 6 1.4498 -7.3736 -0.0015 15 6 0.0699 -7.3946 0.0006 16 7 -0.5919 -8.5633 -0.0040 17 1 -1.5618 -8.5511 -0.0065 18 6 0.0468 -9.7600 -0.0056 19 6 1.3933 -9.8469 -0.0022 20 17 2.1719 -11.3985 -0.0050 21 6 2.1656 -8.6583 0.0027 22 8 3.3858 -8.6998 0.0064 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8710 -3.6040 -0.8922 28 1 0.5426 -4.9308 0.0003 29 1 -0.4811 -6.4657 0.0009 30 1 -0.5383 -10.6678 -0.0097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256667810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:13 Heat of formation + Delta-G solvation = -50.542355 kcal Electronic energy + Delta-G solvation = -17427.739993 eV Core-core repulsion = 14249.317124 eV Total energy + Delta-G solvation = -3178.422869 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12513 -38.83416 -37.83544 -36.66173 -34.77095 -33.01110 -31.99232 -31.52908 -29.37333 -25.44126 -24.19819 -23.41806 -21.35365 -20.64952 -19.35837 -17.81489 -17.03693 -16.37977 -16.21503 -15.59882 -15.37587 -14.83614 -14.57144 -14.47682 -13.80089 -13.42323 -13.34307 -12.95536 -12.87934 -12.30518 -12.14768 -11.30989 -11.19795 -11.05784 -10.62950 -10.35262 -9.91766 -9.79957 -9.68414 -9.37072 -9.09761 -8.56369 -8.40591 -8.19743 -6.11927 -4.13855 0.49222 0.96661 1.67409 2.52947 3.00667 3.27852 3.35505 3.40898 3.55652 3.82483 3.90716 4.32429 4.40352 4.55865 4.67777 5.12114 5.25850 5.27335 5.75909 6.17312 6.33932 6.37400 6.40922 6.75432 6.91854 7.49729 7.59112 7.87435 7.89274 8.01410 8.27370 8.72956 8.92589 9.51266 10.99819 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.048615 B = 0.003337 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.814081 B = 8387.568172 C = 8942.930496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.725 5.725 12 C 0.562 3.438 13 O -0.516 6.516 14 C -0.277 4.277 15 C 0.165 3.835 16 N -0.572 5.572 17 H 0.429 0.571 18 C 0.138 3.862 19 C -0.191 4.191 20 Cl -0.033 7.033 21 C 0.410 3.590 22 O -0.450 6.450 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.389 0.611 29 H 0.178 0.822 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -20.915 -0.016 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.377 5.377 12 C 0.348 3.652 13 O -0.391 6.391 14 C -0.288 4.288 15 C 0.034 3.966 16 N -0.179 5.179 17 H 0.267 0.733 18 C 0.010 3.990 19 C -0.225 4.225 20 Cl -0.004 7.004 21 C 0.292 3.708 22 O -0.328 6.328 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.223 0.777 29 H 0.195 0.805 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.780 -20.939 -0.016 22.337 hybrid contribution -0.747 0.796 0.001 1.092 sum -8.527 -20.143 -0.015 21.873 Atomic orbital electron populations 1.69956 1.06092 1.26747 1.50713 1.24990 0.94902 0.99434 0.94977 0.86456 0.80275 0.83272 0.77585 1.19511 1.20954 1.20949 1.21112 0.93397 0.90347 1.50970 0.92104 1.19330 0.94221 0.91203 0.97706 1.21730 0.96021 0.81049 1.01080 1.46227 1.09795 1.06458 1.75198 1.17411 0.87376 0.82470 0.77977 1.90851 1.12883 1.86883 1.48523 1.22505 0.92118 0.96983 1.17163 1.22416 0.93473 0.89615 0.91109 1.40626 1.11343 1.03648 1.62279 0.73337 1.21477 0.93207 0.89371 0.94938 1.22139 0.92916 0.90217 1.17193 1.98364 1.80934 1.24019 1.97119 1.17937 0.89527 0.85940 0.77370 1.90877 1.13710 1.88216 1.39987 0.92944 0.95982 0.95975 0.92396 0.92385 0.77731 0.80504 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 13.29 55.43 0.74 -24.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.62 5.61 -4.05 -0.02 2.59 16 11 N -0.72 -12.35 5.51 -61.43 -0.34 -12.69 16 12 C 0.56 10.40 7.77 -12.58 -0.10 10.31 16 13 O -0.52 -12.29 15.57 -14.77 -0.23 -12.52 16 14 C -0.28 -3.85 6.05 -102.72 -0.62 -4.47 16 15 C 0.16 1.21 10.73 -16.55 -0.18 1.03 16 16 N -0.57 -2.16 5.16 -12.71 -0.07 -2.23 16 17 H 0.43 -0.35 8.88 -40.82 -0.36 -0.71 16 18 C 0.14 0.76 10.86 -17.04 -0.19 0.57 16 19 C -0.19 -2.09 6.33 -39.41 -0.25 -2.34 16 20 Cl -0.03 -0.36 28.62 -51.86 -1.48 -1.85 16 21 C 0.41 6.50 6.96 -34.66 -0.24 6.26 16 22 O -0.45 -9.44 15.97 -15.19 -0.24 -9.68 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.39 5.09 6.55 -40.82 -0.27 4.82 16 29 H 0.18 0.76 6.42 -52.49 -0.34 0.43 16 30 H 0.17 0.24 8.06 -52.48 -0.42 -0.18 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -39.25 287.48 -7.08 -46.33 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -2.62 Total: -4.13 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.15 Total: 1.07 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.33 Total: -39.78 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.47 Total: -22.20 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.48 Total: -1.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -39.25 -7.08 -46.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256667810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.208 kcal (2) G-P(sol) polarization free energy of solvation -39.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds