Wall clock time and date at job start Mon Mar 30 2020 00:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00361 * 2 1 4 4 H 1.48502 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47222 * 300.00542 * 3 2 1 6 6 H 1.48503 * 109.46805 * 60.00141 * 3 2 1 7 7 C 1.37882 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47042 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47046 * 179.97438 * 10 9 7 12 12 C 1.34782 * 120.00169 * 179.97438 * 11 10 9 13 13 O 1.21618 * 119.99695 * 0.02562 * 12 11 10 14 14 C 1.47288 * 119.99833 * 179.97438 * 12 11 10 15 15 C 1.38006 * 120.87672 * 0.02562 * 14 12 11 16 16 N 1.34318 * 120.39115 * 179.72028 * 15 14 12 17 17 H 0.96999 * 118.79922 * 180.27850 * 16 15 14 18 18 C 1.35639 * 122.38960 * 0.25793 * 16 15 14 19 19 C 1.34939 * 121.78269 * 0.02562 * 18 16 15 20 20 Cl 1.73601 * 120.33801 * 180.02562 * 19 18 16 21 21 C 1.41744 * 119.32071 * 359.97438 * 19 18 16 22 22 O 1.22091 * 121.06788 * 179.97438 * 21 19 18 23 23 H 0.97002 * 119.99835 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47119 * 59.99865 * 9 7 2 25 25 H 1.08997 * 109.46749 * 300.00117 * 9 7 2 26 26 H 1.09001 * 109.47241 * 59.99979 * 10 9 7 27 27 H 1.08995 * 109.46974 * 299.99802 * 10 9 7 28 28 H 0.97001 * 120.00134 * 359.97438 * 11 10 9 29 29 H 1.08002 * 119.80708 * 0.02562 * 15 14 12 30 30 H 1.08004 * 119.10823 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 7 1.5126 -4.9308 -0.0012 12 6 2.1864 -6.0981 -0.0027 13 8 3.4026 -6.0981 -0.0040 14 6 1.4498 -7.3736 -0.0015 15 6 0.0699 -7.3946 0.0006 16 7 -0.5919 -8.5633 -0.0040 17 1 -1.5618 -8.5511 -0.0065 18 6 0.0468 -9.7600 -0.0056 19 6 1.3933 -9.8469 -0.0022 20 17 2.1719 -11.3985 -0.0050 21 6 2.1656 -8.6583 0.0027 22 8 3.3858 -8.6998 0.0064 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 2.8725 -3.6048 0.8877 27 1 2.8710 -3.6040 -0.8922 28 1 0.5426 -4.9308 0.0003 29 1 -0.4811 -6.4657 0.0009 30 1 -0.5383 -10.6678 -0.0097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256667810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:13 Heat of formation + Delta-G solvation = -81.179056 kcal Electronic energy + Delta-G solvation = -17429.068500 eV Core-core repulsion = 14249.317124 eV Total energy + Delta-G solvation = -3179.751376 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.98893 -40.18589 -38.87962 -37.47795 -36.51230 -34.86642 -33.13893 -32.40065 -31.08534 -27.05123 -25.45963 -24.31503 -22.99329 -22.04159 -20.27988 -18.79976 -18.37976 -17.95731 -17.32590 -16.69552 -16.46238 -16.36783 -16.19704 -15.97813 -14.78256 -14.66598 -14.45589 -14.30415 -14.26565 -13.91658 -13.17850 -13.04431 -12.93364 -12.52709 -12.22510 -12.13114 -11.66773 -11.45026 -11.13098 -10.60804 -10.57936 -10.43127 -10.01953 -9.18720 -8.23337 -6.31866 -0.35299 0.23710 0.97048 1.41201 1.43254 1.55747 1.81275 1.90128 2.21240 2.45650 2.66982 3.11819 3.23869 3.69693 3.76903 3.95755 4.25051 4.46000 4.51617 4.56409 4.87015 4.92661 5.30514 5.41446 5.51908 5.62551 5.81125 6.03220 6.19732 6.69558 6.80451 6.92379 7.36911 7.37694 8.88371 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.048615 B = 0.003337 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.814081 B = 8387.568172 C = 8942.930496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.027 3.973 10 C 0.141 3.859 11 N -0.711 5.711 12 C 0.561 3.439 13 O -0.585 6.585 14 C -0.338 4.338 15 C 0.230 3.770 16 N -0.534 5.534 17 H 0.463 0.537 18 C 0.191 3.809 19 C -0.231 4.231 20 Cl -0.043 7.043 21 C 0.390 3.610 22 O -0.538 6.538 23 H 0.266 0.734 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.411 0.589 29 H 0.221 0.779 30 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 -21.634 -0.022 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.070 0.930 9 C -0.011 4.011 10 C 0.017 3.983 11 N -0.364 5.364 12 C 0.350 3.650 13 O -0.465 6.465 14 C -0.349 4.349 15 C 0.095 3.905 16 N -0.141 5.141 17 H 0.308 0.692 18 C 0.062 3.938 19 C -0.263 4.263 20 Cl -0.014 7.014 21 C 0.279 3.721 22 O -0.423 6.423 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.249 0.751 29 H 0.237 0.763 30 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.069 -21.689 -0.022 24.821 hybrid contribution 0.264 0.956 0.003 0.992 sum -11.805 -20.733 -0.018 23.858 Atomic orbital electron populations 1.70023 1.07182 1.27881 1.51053 1.25756 0.95819 1.02664 0.94462 0.85477 0.78871 0.79203 0.77982 1.19553 1.20115 1.20104 1.21498 0.93463 0.92243 1.51466 0.92953 1.19123 0.94048 0.90992 0.96928 1.21213 0.95295 0.82341 0.99434 1.45865 1.10661 1.04812 1.75050 1.18080 0.86902 0.83922 0.76097 1.90807 1.16085 1.87887 1.51756 1.21895 0.94500 0.94004 1.24469 1.22766 0.91110 0.92192 0.84427 1.40932 1.13079 1.02292 1.57797 0.69210 1.22174 0.91530 0.91416 0.88678 1.21862 0.94458 0.88476 1.21543 1.98352 1.81719 1.23904 1.97445 1.18665 0.89192 0.88204 0.76030 1.90827 1.16769 1.89390 1.45323 0.92489 0.96506 0.96497 0.94194 0.94179 0.75146 0.76296 0.74998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.09 13.29 21.45 0.28 -51.81 16 2 C 0.01 0.67 5.46 84.66 0.46 1.13 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C 0.14 6.20 5.61 86.38 0.48 6.68 16 11 N -0.71 -24.18 5.51 -466.52 -2.57 -26.75 16 12 C 0.56 21.56 7.77 86.62 0.67 22.23 16 13 O -0.58 -30.24 15.57 15.06 0.23 -30.01 16 14 C -0.34 -9.20 6.05 -18.63 -0.11 -9.32 16 15 C 0.23 2.27 10.73 84.26 0.90 3.17 16 16 N -0.53 -0.31 5.16 -194.12 -1.00 -1.32 16 17 H 0.46 -4.91 8.88 -92.71 -0.82 -5.74 16 18 C 0.19 1.01 10.86 83.35 0.91 1.92 16 19 C -0.23 -4.66 6.33 22.38 0.14 -4.52 16 20 Cl -0.04 -0.92 28.62 -2.72 -0.08 -1.00 16 21 C 0.39 12.80 6.96 25.46 0.18 12.98 16 22 O -0.54 -24.82 15.97 13.54 0.22 -24.60 16 23 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.41 9.81 6.55 -92.71 -0.61 9.21 16 29 H 0.22 0.41 6.42 -2.91 -0.02 0.40 16 30 H 0.23 -1.27 8.06 -2.91 -0.02 -1.29 16 Total: -1.00 -97.52 287.48 2.91 -94.61 By element: Atomic # 1 Polarization: -9.79 SS G_CDS: -0.22 Total: -10.01 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 4.02 Total: 5.49 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -3.29 Total: -79.88 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: 0.45 Total: -54.61 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -97.52 2.91 -94.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256667810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.427 kcal (2) G-P(sol) polarization free energy of solvation -97.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds