Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47354 * 300.00125 * 3 2 1 6 6 H 1.48505 * 109.47311 * 60.00230 * 3 2 1 7 7 C 1.37873 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00157 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00034 * 84.99894 * 10 9 7 12 12 C 1.50707 * 109.47012 * 84.99956 * 11 10 9 13 13 C 1.38238 * 119.99792 * 90.00154 * 12 11 10 14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11 15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38234 * 120.00179 * 269.98090 * 12 11 10 18 18 S 1.65603 * 120.00270 * 265.00440 * 10 9 7 19 19 N 1.65609 * 107.21419 * 276.45900 * 18 10 9 20 20 O 1.42102 * 106.40104 * 29.99458 * 18 10 9 21 21 O 1.42096 * 106.40561 * 162.91946 * 18 10 9 22 22 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46817 * 59.99886 * 9 7 2 24 24 H 1.08999 * 109.47069 * 300.00569 * 9 7 2 25 25 H 1.09005 * 109.47643 * 325.00416 * 11 10 9 26 26 H 1.09000 * 109.47513 * 204.99580 * 11 10 9 27 27 H 1.08005 * 120.00068 * 359.97438 * 13 12 11 28 28 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 29 29 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 31 31 H 1.07999 * 119.99968 * 359.97438 * 17 12 11 32 32 H 0.97001 * 119.99972 * 353.53962 * 19 18 10 33 33 H 0.96997 * 119.99392 * 173.53642 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7630 -4.0976 1.2633 12 6 1.8176 -5.0951 1.8818 13 6 1.9368 -6.4390 1.5805 14 6 1.0700 -7.3540 2.1482 15 6 0.0845 -6.9253 3.0176 16 6 -0.0380 -5.5809 3.3147 17 6 0.8317 -4.6664 2.7507 18 16 2.6461 -4.3233 -1.4292 19 7 1.4810 -5.4390 -1.8038 20 8 2.5660 -3.3105 -2.4228 21 8 3.8331 -5.0571 -1.1612 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.9023 -3.2583 1.9448 26 1 3.7240 -4.5762 1.0751 27 1 2.7070 -6.7740 0.9015 28 1 1.1628 -8.4039 1.9125 29 1 -0.5924 -7.6404 3.4614 30 1 -0.8107 -5.2454 3.9906 31 1 0.7391 -3.6165 2.9866 32 1 0.7719 -5.6311 -1.1704 33 1 1.5078 -5.9004 -2.6566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260074429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = -54.689748 kcal Electronic energy + Delta-G solvation = -19064.707387 eV Core-core repulsion = 16023.981474 eV Total energy + Delta-G solvation = -3040.725913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.12609 -36.49308 -35.75614 -35.11954 -32.73806 -32.66216 -30.98135 -30.70394 -27.37529 -25.13249 -22.70214 -22.14418 -21.05860 -18.80411 -17.56438 -17.14623 -16.53307 -16.13444 -15.69069 -15.51712 -14.97972 -14.66222 -14.45573 -13.70405 -13.24333 -13.22607 -12.43076 -12.36318 -12.11001 -11.68785 -11.55809 -11.35087 -11.24762 -11.13325 -11.10776 -10.85358 -10.57906 -10.52304 -10.03836 -9.98623 -9.79635 -8.75224 -8.62194 -8.46440 -8.19477 -6.08295 -4.11752 1.21935 1.54615 1.59117 3.30430 3.38535 3.43499 3.57519 4.02901 4.16316 4.43719 5.03422 5.04555 5.15026 5.25749 5.32470 5.35988 5.48848 5.69538 5.78818 6.10460 6.11617 6.23861 6.36245 6.44940 6.61825 6.67218 6.88919 7.16285 7.19102 7.27576 7.48668 7.53932 7.89500 8.17303 8.90943 9.53562 11.00393 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.007585 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.629565 B = 3690.494643 C = 4715.490078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.255 3.745 10 N -0.982 5.982 11 C 0.158 3.842 12 C -0.101 4.101 13 C -0.119 4.119 14 C -0.126 4.126 15 C -0.125 4.125 16 C -0.123 4.123 17 C -0.093 4.093 18 S 2.786 3.214 19 N -1.268 6.268 20 O -0.970 6.970 21 O -1.005 7.005 22 H 0.263 0.737 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.411 0.589 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -13.466 4.451 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.134 3.866 10 N -0.823 5.823 11 C 0.031 3.969 12 C -0.103 4.103 13 C -0.137 4.137 14 C -0.144 4.144 15 C -0.143 4.143 16 C -0.141 4.141 17 C -0.112 4.112 18 S 2.791 3.209 19 N -0.939 5.939 20 O -0.952 6.952 21 O -0.988 6.988 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.237 0.763 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.447 -12.966 3.937 13.558 hybrid contribution -0.424 0.561 0.108 0.711 sum 0.023 -12.406 4.044 13.048 Atomic orbital electron populations 1.69927 1.05970 1.26989 1.50608 1.24922 0.94889 0.99281 0.94941 0.86454 0.80213 0.83302 0.77534 1.19632 1.20862 1.21035 1.21511 0.93731 0.90516 1.50811 0.91948 1.19123 0.86896 0.82100 0.98505 1.57533 1.60064 1.45576 1.19145 1.20191 0.94088 0.96133 0.86463 1.20574 0.97847 0.94535 0.97366 1.21228 0.99520 0.92864 1.00124 1.21072 0.96012 0.99256 0.98019 1.21106 0.98585 0.95864 0.98782 1.21170 0.99331 0.93310 1.00314 1.21251 0.93985 1.00137 0.95834 1.01785 0.72969 0.72917 0.73221 1.53745 1.47698 1.62972 1.29522 1.93650 1.86091 1.56958 1.58532 1.93532 1.46384 1.73710 1.85185 0.92763 0.94526 0.94298 0.88513 0.89153 0.85812 0.86445 0.86595 0.86276 0.85298 0.76272 0.76199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.35 9.38 -34.44 -0.32 -14.67 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.26 6.11 5.09 -5.19 -0.03 6.09 16 10 N -0.98 -19.41 2.81 -116.94 -0.33 -19.74 16 11 C 0.16 2.67 5.78 -5.19 -0.03 2.64 16 12 C -0.10 -1.52 5.46 -104.62 -0.57 -2.09 16 13 C -0.12 -1.60 9.70 -39.58 -0.38 -1.98 16 14 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 15 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 16 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 17 C -0.09 -1.36 9.37 -39.58 -0.37 -1.73 16 18 S 2.79 53.59 6.62 -107.50 -0.71 52.88 16 19 N -1.27 -18.01 9.58 60.35 0.58 -17.43 16 20 O -0.97 -23.15 17.35 -57.17 -0.99 -24.14 16 21 O -1.01 -20.09 16.59 -57.17 -0.95 -21.04 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.04 0.95 7.79 -51.93 -0.40 0.54 16 24 H 0.04 0.93 7.60 -51.93 -0.39 0.54 16 25 H 0.10 1.64 8.05 -51.93 -0.42 1.22 16 26 H 0.09 1.46 6.82 -51.93 -0.35 1.10 16 27 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.95 7.89 -52.49 -0.41 1.53 16 32 H 0.41 5.25 8.96 -34.48 -0.31 4.94 16 33 H 0.41 4.75 8.96 -34.47 -0.31 4.44 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -33.02 301.91 -8.97 -41.99 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.84 Total: 6.99 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.00 Total: -15.78 kcal Atomic # 7 Polarization: -63.02 SS G_CDS: 0.99 Total: -62.03 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.94 Total: -45.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 53.59 SS G_CDS: -0.71 Total: 52.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.02 -8.97 -41.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260074429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.696 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds