Wall clock time and date at job start Mon Mar 30 2020 01:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47354 * 300.00125 * 3 2 1 6 6 H 1.48505 * 109.47311 * 60.00230 * 3 2 1 7 7 C 1.37873 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00233 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00157 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00034 * 84.99894 * 10 9 7 12 12 C 1.50707 * 109.47012 * 84.99956 * 11 10 9 13 13 C 1.38238 * 119.99792 * 90.00154 * 12 11 10 14 14 C 1.38235 * 119.99712 * 179.97438 * 13 12 11 15 15 C 1.38234 * 120.00220 * 359.97124 * 14 13 12 16 16 C 1.38233 * 120.00037 * 0.28719 * 15 14 13 17 17 C 1.38234 * 120.00179 * 269.98090 * 12 11 10 18 18 S 1.65603 * 120.00270 * 265.00440 * 10 9 7 19 19 N 1.65609 * 107.21419 * 276.45900 * 18 10 9 20 20 O 1.42102 * 106.40104 * 29.99458 * 18 10 9 21 21 O 1.42096 * 106.40561 * 162.91946 * 18 10 9 22 22 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46817 * 59.99886 * 9 7 2 24 24 H 1.08999 * 109.47069 * 300.00569 * 9 7 2 25 25 H 1.09005 * 109.47643 * 325.00416 * 11 10 9 26 26 H 1.09000 * 109.47513 * 204.99580 * 11 10 9 27 27 H 1.08005 * 120.00068 * 359.97438 * 13 12 11 28 28 H 1.07999 * 119.99770 * 179.97438 * 14 13 12 29 29 H 1.08002 * 119.99744 * 180.02562 * 15 14 13 30 30 H 1.07998 * 120.00395 * 179.72811 * 16 15 14 31 31 H 1.07999 * 119.99968 * 359.97438 * 17 12 11 32 32 H 0.97001 * 119.99972 * 353.53962 * 19 18 10 33 33 H 0.96997 * 119.99392 * 173.53642 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.7630 -4.0976 1.2633 12 6 1.8176 -5.0951 1.8818 13 6 1.9368 -6.4390 1.5805 14 6 1.0700 -7.3540 2.1482 15 6 0.0845 -6.9253 3.0176 16 6 -0.0380 -5.5809 3.3147 17 6 0.8317 -4.6664 2.7507 18 16 2.6461 -4.3233 -1.4292 19 7 1.4810 -5.4390 -1.8038 20 8 2.5660 -3.3105 -2.4228 21 8 3.8331 -5.0571 -1.1612 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.9023 -3.2583 1.9448 26 1 3.7240 -4.5762 1.0751 27 1 2.7070 -6.7740 0.9015 28 1 1.1628 -8.4039 1.9125 29 1 -0.5924 -7.6404 3.4614 30 1 -0.8107 -5.2454 3.9906 31 1 0.7391 -3.6165 2.9866 32 1 0.7719 -5.6311 -1.1704 33 1 1.5078 -5.9004 -2.6566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260074429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:58 Heat of formation + Delta-G solvation = -79.123195 kcal Electronic energy + Delta-G solvation = -19065.766901 eV Core-core repulsion = 16023.981474 eV Total energy + Delta-G solvation = -3041.785426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19224 -38.15147 -37.30905 -36.80596 -34.67341 -33.99320 -32.30133 -31.69998 -29.15376 -26.64830 -24.40802 -23.29550 -22.19661 -20.31183 -19.05449 -18.83546 -18.10030 -17.51433 -17.22445 -16.99394 -16.34879 -16.04368 -15.79716 -15.32623 -14.68701 -14.22452 -14.02499 -13.86663 -13.51034 -13.25888 -13.13908 -13.06821 -13.02321 -12.90376 -12.49883 -12.42924 -12.22472 -11.96065 -11.72950 -11.65247 -11.29003 -10.58398 -9.93781 -9.73884 -9.63365 -8.19288 -6.29513 -0.29414 0.48962 0.57963 1.38991 1.42098 1.53189 2.06926 2.42299 2.68825 2.97907 3.12663 3.73978 3.87127 3.96086 4.19676 4.25139 4.38019 4.62275 4.69364 4.84674 4.91696 5.17223 5.21387 5.21969 5.25783 5.45528 5.64396 5.68628 5.69477 5.82026 5.88690 6.11776 6.19459 6.37662 6.78461 7.38901 8.88558 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.007585 C = 0.005936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.629565 B = 3690.494643 C = 4715.490078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.273 3.727 10 N -0.984 5.984 11 C 0.155 3.845 12 C -0.115 4.115 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.118 4.118 16 C -0.127 4.127 17 C -0.113 4.113 18 S 2.803 3.197 19 N -1.247 6.247 20 O -1.019 7.019 21 O -1.012 7.012 22 H 0.266 0.734 23 H 0.016 0.984 24 H 0.036 0.964 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.126 0.874 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.422 0.578 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -15.148 5.156 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.150 3.850 10 N -0.824 5.824 11 C 0.030 3.970 12 C -0.117 4.117 13 C -0.143 4.143 14 C -0.138 4.138 15 C -0.136 4.136 16 C -0.145 4.145 17 C -0.132 4.132 18 S 2.808 3.192 19 N -0.925 5.925 20 O -1.002 7.002 21 O -0.995 6.995 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.144 0.856 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.251 0.749 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.084 -14.673 4.652 15.393 hybrid contribution -0.328 0.963 -0.081 1.021 sum -0.244 -13.710 4.570 14.454 Atomic orbital electron populations 1.70007 1.07061 1.27912 1.51305 1.25680 0.95759 1.02436 0.94714 0.85568 0.78972 0.79615 0.77899 1.19520 1.20748 1.19616 1.21853 0.93590 0.92303 1.50651 0.92865 1.18657 0.86926 0.82311 0.97138 1.57327 1.59506 1.45140 1.20465 1.20287 0.94996 0.96510 0.85224 1.20350 0.98137 0.94829 0.98429 1.21305 1.00176 0.92344 1.00499 1.21422 0.94986 1.00392 0.97003 1.21494 0.98498 0.95758 0.97850 1.21415 0.99096 0.93743 1.00202 1.21230 0.95080 0.99926 0.96934 1.01026 0.73231 0.72677 0.72240 1.53180 1.46982 1.61695 1.30619 1.93593 1.86956 1.59302 1.60345 1.93522 1.47303 1.73546 1.85110 0.92472 0.96648 0.94646 0.89492 0.88489 0.85612 0.83456 0.83388 0.84558 0.87021 0.74945 0.74285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.38 13.29 21.45 0.28 -53.10 16 2 C 0.01 0.76 5.46 84.65 0.46 1.22 16 3 Si 0.95 44.55 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -30.37 9.38 25.60 0.24 -30.13 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.27 13.43 5.09 85.64 0.44 13.87 16 10 N -0.98 -39.53 2.81 -523.89 -1.47 -41.00 16 11 C 0.16 5.33 5.78 85.64 0.49 5.83 16 12 C -0.12 -3.41 5.46 -19.86 -0.11 -3.52 16 13 C -0.12 -3.11 9.70 22.27 0.22 -2.89 16 14 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 15 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 16 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 17 C -0.11 -3.27 9.37 22.27 0.21 -3.06 16 18 S 2.80 107.76 6.62 -56.49 -0.37 107.39 16 19 N -1.25 -33.84 9.58 37.02 0.35 -33.49 16 20 O -1.02 -49.49 17.35 -128.00 -2.22 -51.71 16 21 O -1.01 -39.81 16.59 -128.00 -2.12 -41.93 16 22 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 23 H 0.02 0.83 7.79 -2.39 -0.02 0.81 16 24 H 0.04 1.76 7.60 -2.39 -0.02 1.74 16 25 H 0.09 3.09 8.05 -2.38 -0.02 3.07 16 26 H 0.10 3.15 6.82 -2.39 -0.02 3.13 16 27 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.11 3.53 7.89 -2.91 -0.02 3.50 16 32 H 0.42 10.08 8.96 -96.74 -0.87 9.22 16 33 H 0.43 9.10 8.96 -96.75 -0.87 8.23 16 Total: -1.00 -70.80 301.91 -1.50 -72.30 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.60 Total: 20.61 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 2.62 Total: -25.64 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -0.83 Total: -127.59 kcal Atomic # 8 Polarization: -89.30 SS G_CDS: -4.34 Total: -93.65 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 107.76 SS G_CDS: -0.37 Total: 107.39 kcal Total: -70.80 -1.50 -72.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260074429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.819 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds