Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 O 1.45201 * 109.46718 * 179.97438 * 7 6 5 9 9 C 1.34234 * 116.99548 * 179.97438 * 8 7 6 10 10 O 1.20829 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99687 * 179.97438 * 9 8 7 12 12 S 1.81010 * 109.47113 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99951 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00097 * 0.02562 * 13 12 11 15 15 C 1.38797 * 119.99508 * 180.02562 * 13 12 11 16 16 N 1.31630 * 120.00666 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99672 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46953 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46764 * 120.00008 * 17 15 13 20 20 H 1.48495 * 109.47002 * 239.99722 * 17 15 13 21 21 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 22 22 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 23 23 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 24 24 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 25 25 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 26 26 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 28 28 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 29 29 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 30 30 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 31 31 H 1.08996 * 109.47464 * 300.00221 * 11 9 8 32 32 H 1.09002 * 109.47197 * 60.00914 * 11 9 8 33 33 H 0.96998 * 120.00641 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 8 6.3121 -2.8403 1.4684 9 6 6.7880 -3.2115 2.6673 10 8 6.2646 -2.8046 3.6775 11 6 7.9745 -4.1365 2.7534 12 16 8.3721 -4.4476 4.4917 13 6 9.7540 -5.5240 4.3016 14 1 10.0986 -5.7911 3.3135 15 6 10.3998 -6.0286 5.4217 16 7 9.9797 -5.7036 6.6261 17 14 11.8646 -7.1704 5.2202 18 1 12.1346 -7.3787 3.7749 19 1 13.0575 -6.5635 5.8637 20 1 11.5664 -8.4760 5.8618 21 8 2.2923 -1.0895 0.0044 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1203 -0.0045 26 1 4.5212 1.2433 0.0076 27 1 4.5127 -2.5646 -0.4964 28 1 5.6061 -1.1601 -0.4949 29 1 5.4244 -1.0212 1.9742 30 1 4.3311 -2.4258 1.9727 31 1 7.7365 -5.0795 2.2612 32 1 8.8310 -3.6757 2.2614 33 1 10.4312 -6.0559 7.4089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263525075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -84.232713 kcal Electronic energy + Delta-G solvation = -17028.666361 eV Core-core repulsion = 13954.366618 eV Total energy + Delta-G solvation = -3074.299743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.83765 -40.02270 -36.40613 -33.87355 -33.40585 -32.49065 -31.02772 -29.56672 -26.29926 -25.54116 -23.22214 -21.95972 -21.00523 -20.33397 -17.97731 -17.28347 -16.63330 -16.48175 -16.42822 -15.57072 -14.85298 -14.68501 -14.44066 -14.07479 -13.52301 -13.44611 -13.05228 -13.01642 -12.95610 -12.64789 -12.48548 -12.07591 -11.81035 -11.59360 -11.09985 -11.08252 -10.81934 -10.43960 -10.12072 -10.03241 -9.89835 -9.12917 -8.53768 -8.35982 -6.61042 -6.27915 -4.00645 1.40290 2.29789 2.48771 2.64922 2.81530 3.19453 3.24434 3.29540 3.52490 4.14064 4.37549 4.60558 4.74107 4.76534 4.81158 5.05532 5.08009 5.09746 5.15557 5.21401 5.35907 5.43731 5.47991 5.60174 5.73445 5.76776 5.79292 5.92977 6.07351 6.29277 6.65848 6.93021 7.55219 8.14812 8.30100 9.17676 10.79639 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.064165 B = 0.002679 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.273542 B =10448.222169 C =10595.532354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.199 4.199 5 C -0.012 4.012 6 C -0.037 4.037 7 C 0.070 3.930 8 O -0.361 6.361 9 C 0.480 3.520 10 O -0.487 6.487 11 C -0.128 4.128 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.922 3.078 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.279 1.279 21 O -0.173 6.173 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 10.926 -15.358 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.232 4.232 4 C -0.218 4.218 5 C -0.062 4.062 6 C -0.074 4.074 7 C -0.005 4.005 8 O -0.279 6.279 9 C 0.321 3.679 10 O -0.372 6.372 11 C -0.276 4.276 12 S 0.167 5.833 13 C -0.683 4.683 14 H 0.095 0.905 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.748 3.252 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.205 1.205 21 O -0.070 6.070 22 H 0.099 0.901 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.166 0.834 26 H 0.168 0.832 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.278 11.141 -13.919 23.479 hybrid contribution 1.489 -0.825 -1.126 2.041 sum -13.788 10.316 -15.044 22.866 Atomic orbital electron populations 1.20314 0.85068 1.04176 1.03480 1.22479 0.94065 0.84156 1.05731 1.21577 0.92675 0.99437 1.09496 1.21638 0.98427 0.93777 1.07922 1.21999 0.82820 0.94264 1.07114 1.19932 0.91814 0.98932 0.96725 1.22893 0.87434 0.93734 0.96443 1.86461 1.45807 1.61219 1.34452 1.23317 0.84233 0.79584 0.80764 1.90678 1.57820 1.52414 1.36259 1.23298 0.95567 0.99868 1.08841 1.85442 1.40349 1.62558 0.94995 1.22882 1.16405 1.33263 0.95761 0.90501 1.25015 0.97769 0.96421 0.94387 1.70020 1.39937 1.42622 0.97657 0.86061 0.80892 0.79739 0.78479 1.19494 1.20511 1.20507 1.83964 1.16316 1.35167 1.71521 0.90111 0.90445 0.89308 0.83421 0.83197 0.88815 0.87543 0.90715 0.90917 0.87840 0.87831 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.42 36.00 0.38 -0.07 16 2 C -0.01 -0.14 7.32 -35.63 -0.26 -0.40 16 3 C -0.21 -2.05 10.81 -39.71 -0.43 -2.48 16 4 C -0.20 -2.05 10.81 -39.70 -0.43 -2.48 16 5 C -0.01 -0.13 6.58 -35.62 -0.23 -0.37 16 6 C -0.04 -0.37 6.13 -27.88 -0.17 -0.54 16 7 C 0.07 0.92 5.45 37.16 0.20 1.12 16 8 O -0.36 -5.68 10.22 -39.27 -0.40 -6.08 16 9 C 0.48 9.26 7.97 36.00 0.29 9.55 16 10 O -0.49 -10.84 15.61 -18.75 -0.29 -11.13 16 11 C -0.13 -2.60 6.27 36.00 0.23 -2.37 16 12 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 13 C -0.54 -15.00 9.50 30.94 0.29 -14.70 16 14 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 16 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 17 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 O -0.17 -2.06 10.65 5.72 0.06 -2.00 16 22 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 26 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 32 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -33.35 313.39 -6.84 -40.19 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.19 Total: -2.17 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -0.24 Total: -10.78 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.73 Total: -25.06 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.63 Total: -19.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.35 -6.84 -40.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263525075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.040 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds