Wall clock time and date at job start Mon Mar 30 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 O 1.45201 * 109.46718 * 179.97438 * 7 6 5 9 9 C 1.34234 * 116.99548 * 179.97438 * 8 7 6 10 10 O 1.20829 * 120.00135 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99687 * 179.97438 * 9 8 7 12 12 S 1.81010 * 109.47113 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99951 * 180.02562 * 12 11 9 14 14 H 1.07996 * 120.00097 * 0.02562 * 13 12 11 15 15 C 1.38797 * 119.99508 * 180.02562 * 13 12 11 16 16 N 1.31630 * 120.00666 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99672 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.46953 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46764 * 120.00008 * 17 15 13 20 20 H 1.48495 * 109.47002 * 239.99722 * 17 15 13 21 21 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 22 22 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 23 23 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 24 24 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 25 25 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 26 26 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 27 27 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 28 28 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 29 29 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 30 30 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 31 31 H 1.08996 * 109.47464 * 300.00221 * 11 9 8 32 32 H 1.09002 * 109.47197 * 60.00914 * 11 9 8 33 33 H 0.96998 * 120.00641 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 8 6.3121 -2.8403 1.4684 9 6 6.7880 -3.2115 2.6673 10 8 6.2646 -2.8046 3.6775 11 6 7.9745 -4.1365 2.7534 12 16 8.3721 -4.4476 4.4917 13 6 9.7540 -5.5240 4.3016 14 1 10.0986 -5.7911 3.3135 15 6 10.3998 -6.0286 5.4217 16 7 9.9797 -5.7036 6.6261 17 14 11.8646 -7.1704 5.2202 18 1 12.1346 -7.3787 3.7749 19 1 13.0575 -6.5635 5.8637 20 1 11.5664 -8.4760 5.8618 21 8 2.2923 -1.0895 0.0044 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.9666 2.1203 -0.0045 26 1 4.5212 1.2433 0.0076 27 1 4.5127 -2.5646 -0.4964 28 1 5.6061 -1.1601 -0.4949 29 1 5.4244 -1.0212 1.9742 30 1 4.3311 -2.4258 1.9727 31 1 7.7365 -5.0795 2.2612 32 1 8.8310 -3.6757 2.2614 33 1 10.4312 -6.0559 7.4089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263525075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:47 Heat of formation + Delta-G solvation = -103.590727 kcal Electronic energy + Delta-G solvation = -17029.505788 eV Core-core repulsion = 13954.366618 eV Total energy + Delta-G solvation = -3075.139169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.60672 -41.50166 -37.83018 -34.79167 -34.60935 -34.13231 -31.95435 -30.96416 -27.74787 -27.07547 -24.14294 -22.73893 -22.45431 -21.10589 -19.91943 -18.77553 -17.86551 -17.50852 -17.36064 -16.92818 -16.86385 -16.03442 -15.73412 -15.23845 -14.64466 -14.46313 -14.28819 -13.85667 -13.78886 -13.75717 -13.55857 -13.20120 -12.96717 -12.90914 -12.88612 -12.64230 -12.54620 -11.76575 -11.66558 -11.64109 -11.17401 -10.87496 -10.37307 -9.28806 -8.74052 -8.37450 -6.17339 0.58658 1.01992 1.09765 1.40752 1.42701 1.55452 1.60847 1.77676 2.08266 2.23903 2.97776 3.25608 3.59587 3.75981 3.78562 3.95024 4.06234 4.09020 4.18864 4.27351 4.44968 4.47509 4.63035 4.70038 4.72661 4.84143 4.91827 5.06965 5.22397 5.28635 5.41887 5.60043 6.17060 6.18732 6.64621 7.04458 8.72072 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.064165 B = 0.002679 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.273542 B =10448.222169 C =10595.532354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.024 4.024 3 C -0.226 4.226 4 C -0.203 4.203 5 C -0.036 4.036 6 C -0.025 4.025 7 C 0.068 3.932 8 O -0.346 6.346 9 C 0.489 3.511 10 O -0.522 6.522 11 C -0.107 4.107 12 S -0.142 6.142 13 C -0.545 4.545 14 H 0.088 0.912 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 1.001 2.999 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.274 1.274 21 O -0.194 6.194 22 H 0.096 0.904 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.169 0.831 26 H 0.165 0.835 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.289 11.036 -17.344 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C -0.245 4.245 4 C -0.222 4.222 5 C -0.085 4.085 6 C -0.062 4.062 7 C -0.007 4.007 8 O -0.263 6.263 9 C 0.331 3.669 10 O -0.410 6.410 11 C -0.255 4.255 12 S 0.085 5.915 13 C -0.693 4.693 14 H 0.106 0.894 15 C -0.191 4.191 16 N -0.547 5.547 17 Si 0.823 3.177 18 H -0.179 1.179 19 H -0.199 1.199 20 H -0.200 1.200 21 O -0.092 6.092 22 H 0.115 0.885 23 H 0.096 0.904 24 H 0.126 0.874 25 H 0.187 0.813 26 H 0.183 0.817 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.068 11.262 -15.938 24.656 hybrid contribution 1.279 -0.749 -0.598 1.598 sum -13.789 10.513 -16.536 23.960 Atomic orbital electron populations 1.20504 0.82615 1.05141 1.04781 1.23268 0.95623 0.83791 1.04677 1.21941 0.92444 1.00558 1.09558 1.21988 0.99479 0.93784 1.06912 1.22170 0.82887 0.94792 1.08675 1.19884 0.92312 0.99527 0.94467 1.23132 0.85902 0.92827 0.98790 1.86431 1.46471 1.61326 1.32097 1.23050 0.83692 0.78960 0.81184 1.90675 1.58889 1.53784 1.37687 1.23093 0.96972 1.01470 1.03990 1.85580 1.41124 1.63144 1.01690 1.23224 1.16417 1.33222 0.96446 0.89442 1.26142 1.00988 0.98069 0.93879 1.70172 1.41693 1.44143 0.98704 0.84867 0.76546 0.77138 0.79164 1.17940 1.19919 1.19952 1.83952 1.16886 1.36379 1.72027 0.88542 0.90385 0.87409 0.81298 0.81695 0.88071 0.85460 0.90820 0.91991 0.85787 0.85626 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.42 71.23 0.74 -0.02 16 2 C -0.02 -0.44 7.32 24.83 0.18 -0.26 16 3 C -0.23 -4.03 10.81 22.19 0.24 -3.79 16 4 C -0.20 -3.93 10.81 22.19 0.24 -3.69 16 5 C -0.04 -0.77 6.58 24.84 0.16 -0.60 16 6 C -0.02 -0.47 6.13 29.85 0.18 -0.29 16 7 C 0.07 1.73 5.45 71.98 0.39 2.12 16 8 O -0.35 -10.37 10.22 -51.46 -0.53 -10.90 16 9 C 0.49 18.54 7.97 71.23 0.57 19.11 16 10 O -0.52 -23.55 15.61 21.95 0.34 -23.21 16 11 C -0.11 -4.23 6.27 71.23 0.45 -3.78 16 12 S -0.14 -7.72 20.58 -56.49 -1.16 -8.88 16 13 C -0.55 -30.46 9.50 67.95 0.65 -29.82 16 14 H 0.09 4.53 7.80 -2.91 -0.02 4.50 16 15 C 0.01 0.79 5.49 84.86 0.47 1.26 16 16 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 17 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 O -0.19 -4.54 10.65 -2.45 -0.03 -4.57 16 22 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 23 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 26 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 30 H 0.06 1.72 8.13 -2.39 -0.02 1.71 16 31 H 0.12 4.42 8.14 -2.40 -0.02 4.40 16 32 H 0.13 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.74 313.39 6.32 -66.43 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.11 Total: 10.69 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.27 Total: -19.76 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.29 Total: -54.68 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.21 Total: -38.67 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.16 Total: -8.88 kcal Total: -72.74 6.32 -66.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263525075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.165 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds