Wall clock time and date at job start Mon Mar 30 2020 00:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.95293 * 2 1 4 4 C 1.38283 * 120.16864 * 179.97438 * 3 2 1 5 5 C 1.38183 * 120.06801 * 359.78210 * 4 3 2 6 6 Cl 1.73609 * 120.05320 * 180.25653 * 5 4 3 7 7 C 1.39057 * 119.90014 * 0.49098 * 5 4 3 8 8 S 1.76196 * 120.08366 * 179.76817 * 7 5 4 9 9 C 1.81395 * 102.99936 * 185.76156 * 8 7 5 10 10 H 1.09002 * 109.47017 * 310.19349 * 9 8 7 11 11 C 1.53005 * 109.47519 * 70.19275 * 9 8 7 12 12 C 1.53001 * 109.47382 * 190.19256 * 9 8 7 13 13 C 1.50698 * 109.47024 * 64.99819 * 12 9 8 14 14 H 1.08003 * 120.00232 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00309 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99640 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47182 * 59.99927 * 17 15 13 19 19 H 1.48508 * 109.47077 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47107 * 299.99587 * 17 15 13 21 21 C 1.38097 * 119.95021 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47147 * 269.97927 * 1 2 3 23 23 H 1.09005 * 109.47260 * 29.97977 * 1 2 3 24 24 H 1.09002 * 109.47371 * 149.97615 * 1 2 3 25 25 H 1.08000 * 119.91188 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.96660 * 180.02562 * 4 3 2 27 27 H 1.08999 * 109.47434 * 185.73014 * 11 9 8 28 28 H 1.09001 * 109.46554 * 305.72891 * 11 9 8 29 29 H 1.08995 * 109.47142 * 65.72523 * 11 9 8 30 30 H 1.08997 * 109.47129 * 305.00278 * 12 9 8 31 31 H 1.08997 * 109.47320 * 184.99571 * 12 9 8 32 32 H 0.97001 * 120.00075 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.03144 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1984 0.0000 4 6 3.5804 1.2036 0.0005 5 6 4.2772 0.0103 0.0056 6 17 6.0133 0.0173 0.0130 7 6 3.5858 -1.1962 -0.0001 8 16 4.4695 -2.7205 0.0001 9 6 3.1536 -3.9551 -0.1858 10 1 2.3660 -3.7590 0.5418 11 6 2.5737 -3.8736 -1.5993 12 6 3.7288 -5.3532 0.0496 13 6 4.1886 -5.4729 1.4797 14 1 4.0810 -4.6357 2.1535 15 6 4.7468 -6.6512 1.9281 16 7 4.8775 -7.6708 1.1078 17 14 5.3161 -6.7998 3.7009 18 1 4.1636 -6.5797 4.6111 19 1 5.8746 -8.1568 3.9294 20 1 6.3624 -5.7814 3.9719 21 6 2.1964 -1.1966 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6553 2.1324 -0.0004 26 1 4.1163 2.1412 0.0010 27 1 1.7172 -4.5429 -1.6799 28 1 2.2561 -2.8510 -1.8033 29 1 3.3346 -4.1687 -2.3218 30 1 4.5745 -5.5153 -0.6187 31 1 2.9604 -6.1003 -0.1487 32 1 5.2699 -8.4999 1.4232 33 1 1.6561 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307395134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:08 Heat of formation + Delta-G solvation = -7.108409 kcal Electronic energy + Delta-G solvation = -15884.472060 eV Core-core repulsion = 13254.225843 eV Total energy + Delta-G solvation = -2630.246217 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.18559 -36.31553 -34.72903 -32.48610 -32.26173 -30.93289 -27.52140 -26.76476 -23.36900 -22.94187 -21.95076 -20.24451 -17.22158 -16.38018 -16.17377 -15.65407 -14.86761 -14.59457 -14.03813 -14.01962 -13.55117 -12.99272 -12.83246 -12.61531 -12.43327 -12.01407 -11.84793 -11.58455 -11.39440 -11.12677 -10.94862 -10.83908 -10.75639 -10.55704 -10.31660 -9.61365 -9.49983 -9.27628 -9.14282 -8.53020 -8.39490 -6.85458 -6.04941 -4.06876 1.19861 1.30310 2.01685 2.41561 3.12321 3.34037 3.37733 3.41901 3.61300 4.44377 4.79082 4.82230 5.18336 5.21859 5.32525 5.43083 5.51727 5.55805 5.60625 5.64740 5.85890 5.89504 5.95937 6.15888 6.21447 6.25791 6.51648 6.52526 6.63246 6.83632 7.45307 7.53395 7.91777 8.27992 8.97265 9.57411 11.06225 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.005759 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.348533 B = 4860.990144 C = 5440.480956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.134 4.134 4 C -0.090 4.090 5 C -0.038 4.038 6 Cl -0.062 7.062 7 C -0.073 4.073 8 S -0.050 6.050 9 C -0.075 4.075 10 H 0.082 0.918 11 C -0.149 4.149 12 C 0.041 3.959 13 C -0.520 4.520 14 H 0.062 0.938 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.131 4.131 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 16.245 -4.017 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.066 4.066 3 C -0.156 4.156 4 C -0.110 4.110 5 C -0.073 4.073 6 Cl -0.033 7.033 7 C -0.188 4.188 8 S 0.200 5.800 9 C -0.203 4.203 10 H 0.100 0.900 11 C -0.208 4.208 12 C 0.002 3.998 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.156 4.156 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.897 15.654 -3.930 16.866 hybrid contribution -0.826 0.067 0.927 1.244 sum -5.724 15.721 -3.002 16.997 Atomic orbital electron populations 1.20805 0.90951 1.02822 1.02526 1.19880 0.96116 0.92775 0.97846 1.20838 0.93184 0.97598 1.03995 1.20877 0.94184 0.96191 0.99728 1.20361 0.84658 0.93445 1.08798 1.98360 1.09493 1.98589 1.96848 1.22255 0.96766 0.98426 1.01381 1.86258 1.13803 0.92251 1.87643 1.23821 0.97857 1.00100 0.98569 0.89985 1.22173 1.01318 1.00960 0.96316 1.19017 0.96590 0.86240 0.97916 1.21187 1.40378 0.98664 0.95659 0.91972 1.24968 0.95713 0.95767 0.97643 1.69942 1.44783 1.03466 1.35231 0.86648 0.79233 0.77141 0.85033 1.20228 1.21304 1.19973 1.21168 0.92017 0.98763 1.03670 0.90932 0.91467 0.91359 0.85572 0.85139 0.91955 0.93247 0.91742 0.95441 0.94549 0.92842 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 2 C -0.06 -0.80 5.88 -104.65 -0.62 -1.41 16 3 C -0.13 -1.55 9.70 -39.54 -0.38 -1.93 16 4 C -0.09 -1.14 9.82 -39.58 -0.39 -1.53 16 5 C -0.04 -0.60 6.34 -39.30 -0.25 -0.85 16 6 Cl -0.06 -0.96 27.84 -51.86 -1.44 -2.41 16 7 C -0.07 -1.25 5.98 -39.02 -0.23 -1.48 16 8 S -0.05 -1.00 19.52 -107.50 -2.10 -3.09 16 9 C -0.07 -1.49 1.98 -26.73 -0.05 -1.54 16 10 H 0.08 1.60 6.83 -51.92 -0.35 1.25 16 11 C -0.15 -2.45 8.71 37.16 0.32 -2.13 16 12 C 0.04 1.01 4.45 -27.88 -0.12 0.88 16 13 C -0.52 -14.29 8.53 -34.44 -0.29 -14.58 16 14 H 0.06 1.69 7.60 -52.48 -0.40 1.30 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.13 -1.97 7.70 -39.37 -0.30 -2.28 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 26 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.73 6.14 -51.93 -0.32 0.41 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 33 H 0.14 2.00 5.00 -52.48 -0.26 1.74 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -29.43 302.93 -9.59 -39.02 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.27 Total: -3.21 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -2.06 Total: -25.94 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.10 Total: -3.09 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.44 Total: -2.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.43 -9.59 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307395134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.911 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds