Wall clock time and date at job start Mon Mar 30 2020 00:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38310 * 119.95293 * 2 1 4 4 C 1.38283 * 120.16864 * 179.97438 * 3 2 1 5 5 C 1.38183 * 120.06801 * 359.78210 * 4 3 2 6 6 Cl 1.73609 * 120.05320 * 180.25653 * 5 4 3 7 7 C 1.39057 * 119.90014 * 0.49098 * 5 4 3 8 8 S 1.76196 * 120.08366 * 179.76817 * 7 5 4 9 9 C 1.81395 * 102.99936 * 185.76156 * 8 7 5 10 10 H 1.09002 * 109.47017 * 310.19349 * 9 8 7 11 11 C 1.53005 * 109.47519 * 70.19275 * 9 8 7 12 12 C 1.53001 * 109.47382 * 190.19256 * 9 8 7 13 13 C 1.50698 * 109.47024 * 64.99819 * 12 9 8 14 14 H 1.08003 * 120.00232 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00309 * 180.02562 * 13 12 9 16 16 N 1.31517 * 119.99640 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00213 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47182 * 59.99927 * 17 15 13 19 19 H 1.48508 * 109.47077 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47107 * 299.99587 * 17 15 13 21 21 C 1.38097 * 119.95021 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47147 * 269.97927 * 1 2 3 23 23 H 1.09005 * 109.47260 * 29.97977 * 1 2 3 24 24 H 1.09002 * 109.47371 * 149.97615 * 1 2 3 25 25 H 1.08000 * 119.91188 * 359.97438 * 3 2 1 26 26 H 1.08003 * 119.96660 * 180.02562 * 4 3 2 27 27 H 1.08999 * 109.47434 * 185.73014 * 11 9 8 28 28 H 1.09001 * 109.46554 * 305.72891 * 11 9 8 29 29 H 1.08995 * 109.47142 * 65.72523 * 11 9 8 30 30 H 1.08997 * 109.47129 * 305.00278 * 12 9 8 31 31 H 1.08997 * 109.47320 * 184.99571 * 12 9 8 32 32 H 0.97001 * 120.00075 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.03144 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1984 0.0000 4 6 3.5804 1.2036 0.0005 5 6 4.2772 0.0103 0.0056 6 17 6.0133 0.0173 0.0130 7 6 3.5858 -1.1962 -0.0001 8 16 4.4695 -2.7205 0.0001 9 6 3.1536 -3.9551 -0.1858 10 1 2.3660 -3.7590 0.5418 11 6 2.5737 -3.8736 -1.5993 12 6 3.7288 -5.3532 0.0496 13 6 4.1886 -5.4729 1.4797 14 1 4.0810 -4.6357 2.1535 15 6 4.7468 -6.6512 1.9281 16 7 4.8775 -7.6708 1.1078 17 14 5.3161 -6.7998 3.7009 18 1 4.1636 -6.5797 4.6111 19 1 5.8746 -8.1568 3.9294 20 1 6.3624 -5.7814 3.9719 21 6 2.1964 -1.1966 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6553 2.1324 -0.0004 26 1 4.1163 2.1412 0.0010 27 1 1.7172 -4.5429 -1.6799 28 1 2.2561 -2.8510 -1.8033 29 1 3.3346 -4.1687 -2.3218 30 1 4.5745 -5.5153 -0.6187 31 1 2.9604 -6.1003 -0.1487 32 1 5.2699 -8.4999 1.4232 33 1 1.6561 -2.1317 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307395134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:07 Heat of formation + Delta-G solvation = -21.227997 kcal Electronic energy + Delta-G solvation = -15885.084332 eV Core-core repulsion = 13254.225843 eV Total energy + Delta-G solvation = -2630.858489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24497 -37.48255 -36.51620 -34.19646 -33.44609 -32.11027 -29.37788 -27.66528 -25.28997 -24.01295 -23.22884 -21.72027 -18.57639 -18.33963 -17.49802 -16.77671 -16.55319 -16.18830 -15.29754 -15.04432 -14.67960 -14.52203 -14.20129 -13.80276 -13.60598 -13.36771 -13.34472 -13.09282 -12.68663 -12.64698 -12.44273 -12.38078 -12.15662 -12.10185 -11.72961 -11.50009 -11.26805 -10.77520 -10.62364 -10.51570 -9.59231 -8.31251 -8.21216 -6.29262 0.11554 0.23583 0.62041 1.21834 1.38305 1.41036 1.48488 1.69704 2.40145 2.56836 3.13875 3.76864 3.93161 4.01061 4.13838 4.26043 4.31107 4.40140 4.49382 4.70419 4.81628 4.86803 4.91586 4.94801 5.08552 5.15421 5.20320 5.24834 5.36113 5.48114 5.55614 5.75751 5.86393 6.16891 6.82028 7.38368 8.90279 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.005759 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.348533 B = 4860.990144 C = 5440.480956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.119 4.119 4 C -0.088 4.088 5 C -0.055 4.055 6 Cl -0.072 7.072 7 C -0.088 4.088 8 S -0.113 6.113 9 C -0.058 4.058 10 H 0.083 0.917 11 C -0.139 4.139 12 C 0.047 3.953 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.143 4.143 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.056 0.944 30 H -0.002 1.002 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 18.946 -3.516 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.088 4.088 6 Cl -0.043 7.043 7 C -0.203 4.203 8 S 0.135 5.865 9 C -0.187 4.187 10 H 0.101 0.899 11 C -0.197 4.197 12 C 0.009 3.991 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.167 4.167 22 H 0.100 0.900 23 H 0.111 0.889 24 H 0.088 0.912 25 H 0.185 0.815 26 H 0.175 0.825 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.017 0.983 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.711 18.384 -3.430 19.869 hybrid contribution -0.350 -0.603 0.744 1.020 sum -7.061 17.781 -2.685 19.319 Atomic orbital electron populations 1.20893 0.88382 1.04224 1.03528 1.20294 0.97959 0.92006 0.96152 1.21360 0.92741 0.98904 1.00956 1.21264 0.94975 0.96045 0.98476 1.20631 0.84431 0.94053 1.09692 1.98353 1.10391 1.98599 1.96960 1.22073 0.97361 0.96542 1.04295 1.86271 1.15523 0.95221 1.89519 1.23511 0.97329 0.97195 1.00658 0.89888 1.22084 1.01316 1.02509 0.93830 1.18808 0.95107 0.89109 0.96109 1.21513 1.39955 0.98471 0.96835 0.92225 1.25803 0.95982 0.95563 1.01769 1.70059 1.45892 1.03992 1.37121 0.85661 0.78970 0.77194 0.80267 1.19075 1.20697 1.19834 1.21290 0.91281 0.99975 1.04197 0.89971 0.88932 0.91220 0.81485 0.82465 0.90564 0.91289 0.92463 0.98328 0.96280 0.92774 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.01 71.24 0.71 -0.92 16 2 C -0.06 -1.32 5.88 -19.88 -0.12 -1.44 16 3 C -0.12 -2.19 9.70 22.30 0.22 -1.98 16 4 C -0.09 -1.95 9.82 22.27 0.22 -1.73 16 5 C -0.05 -1.63 6.34 22.45 0.14 -1.49 16 6 Cl -0.07 -2.22 27.84 -2.72 -0.08 -2.30 16 7 C -0.09 -2.95 5.98 22.63 0.14 -2.82 16 8 S -0.11 -4.64 19.52 -56.49 -1.10 -5.74 16 9 C -0.06 -2.38 1.98 30.60 0.06 -2.32 16 10 H 0.08 3.30 6.83 -2.39 -0.02 3.28 16 11 C -0.14 -4.57 8.71 71.98 0.63 -3.94 16 12 C 0.05 2.42 4.45 29.85 0.13 2.55 16 13 C -0.53 -29.90 8.53 25.60 0.22 -29.68 16 14 H 0.06 3.33 7.60 -2.91 -0.02 3.31 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 17 Si 0.95 45.14 29.54 68.60 2.03 47.16 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 21 C -0.14 -4.07 7.70 22.40 0.17 -3.89 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.09 0.89 8.08 -2.38 -0.02 0.87 16 24 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 25 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 26 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 1.99 6.14 -2.39 -0.01 1.98 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.13 3.75 5.00 -2.91 -0.01 3.74 16 Total: -1.00 -65.56 302.93 5.21 -60.35 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.10 Total: 3.34 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 2.98 Total: -46.80 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.10 Total: -5.74 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.08 Total: -2.30 kcal Total: -65.56 5.21 -60.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307395134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.118 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds