Wall clock time and date at job start Mon Mar 30 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.94814 * 2 1 4 4 C 1.38294 * 120.16534 * 180.27319 * 3 2 1 5 5 C 1.38189 * 120.06679 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.04837 * 180.02562 * 5 4 3 7 7 C 1.39043 * 119.90050 * 0.02562 * 5 4 3 8 8 S 1.76203 * 120.08567 * 179.97438 * 7 5 4 9 9 C 1.81396 * 103.00074 * 174.31793 * 8 7 5 10 10 H 1.08989 * 109.47414 * 49.24130 * 9 8 7 11 11 C 1.53000 * 109.46862 * 289.23852 * 9 8 7 12 12 C 1.53004 * 109.46861 * 169.24512 * 9 8 7 13 13 C 1.50707 * 109.46850 * 294.99700 * 12 9 8 14 14 H 1.07997 * 119.99541 * 0.02562 * 13 12 9 15 15 C 1.37871 * 119.99679 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99833 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00309 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47180 * 90.00250 * 17 15 13 19 19 H 1.48500 * 109.47131 * 210.00253 * 17 15 13 20 20 H 1.48497 * 109.47032 * 330.00405 * 17 15 13 21 21 C 1.38088 * 119.94913 * 180.27033 * 2 1 3 22 22 H 1.09000 * 109.46978 * 269.72707 * 1 2 3 23 23 H 1.09002 * 109.46936 * 29.72452 * 1 2 3 24 24 H 1.09000 * 109.47251 * 149.72837 * 1 2 3 25 25 H 1.07997 * 119.91938 * 0.25485 * 3 2 1 26 26 H 1.08008 * 119.96463 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.46898 * 54.42459 * 11 9 8 28 28 H 1.09002 * 109.47244 * 174.42405 * 11 9 8 29 29 H 1.09002 * 109.47568 * 294.42528 * 11 9 8 30 30 H 1.08997 * 109.47410 * 54.99510 * 12 9 8 31 31 H 1.09003 * 109.47083 * 174.99709 * 12 9 8 32 32 H 0.97003 * 120.00384 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.03812 * 359.71374 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1984 0.0000 4 6 3.5804 1.2036 -0.0057 5 6 4.2772 0.0103 -0.0120 6 17 6.0132 0.0175 -0.0184 7 6 3.5859 -1.1960 -0.0130 8 16 4.4695 -2.7205 -0.0217 9 6 3.1532 -3.9561 0.1547 10 1 2.3621 -3.7496 -0.5659 11 6 2.5812 -3.8930 1.5723 12 6 3.7259 -5.3514 -0.1025 13 6 4.1779 -5.4524 -1.5366 14 1 4.0681 -4.6058 -2.1982 15 6 4.7315 -6.6254 -2.0039 16 7 5.1265 -6.7133 -3.2553 17 14 4.9221 -8.0893 -0.8593 18 1 3.7003 -8.9310 -0.9245 19 1 6.0995 -8.8929 -1.2753 20 1 5.1177 -7.6078 0.5317 21 6 2.1964 -1.1965 -0.0056 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 0.8925 -0.5096 24 1 -0.3634 -0.8875 -0.5180 25 1 1.6553 2.1324 0.0042 26 1 4.1163 2.1414 -0.0061 27 1 2.2634 -2.8735 1.7908 28 1 1.7261 -4.5645 1.6494 29 1 3.3466 -4.1960 2.2869 30 1 4.5749 -5.5234 0.5590 31 1 2.9578 -6.1005 0.0900 32 1 5.5157 -7.5387 -3.5842 33 1 1.6562 -2.1316 -0.0054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307395135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:09 Heat of formation + Delta-G solvation = -2.564620 kcal Electronic energy + Delta-G solvation = -15902.633207 eV Core-core repulsion = 13272.584023 eV Total energy + Delta-G solvation = -2630.049184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19305 -36.31887 -34.87018 -32.49194 -32.26619 -31.00221 -28.07328 -26.77370 -23.21463 -22.95231 -21.90574 -20.20490 -17.22589 -16.78674 -16.21839 -15.67914 -14.97554 -14.54010 -14.05028 -13.93922 -13.57702 -13.07014 -12.84689 -12.55332 -12.51627 -12.30635 -12.03981 -11.87596 -11.42927 -11.23763 -11.03313 -11.00714 -10.74947 -10.36338 -10.02931 -9.75789 -9.57915 -9.30763 -9.22757 -8.57353 -8.53468 -6.87343 -6.06169 -4.05318 1.19322 1.29531 1.97008 2.40068 3.05186 3.27152 3.35838 3.37619 3.60660 4.41302 4.78781 4.81277 5.18085 5.21594 5.26826 5.39488 5.43446 5.50288 5.51239 5.60262 5.78159 5.85272 5.95174 6.13262 6.15620 6.20540 6.32962 6.43908 6.54062 6.82802 6.94045 7.11718 7.66541 8.47663 9.00098 9.53907 11.06545 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.005711 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.349931 B = 4901.262914 C = 5569.528648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.133 4.133 4 C -0.089 4.089 5 C -0.038 4.038 6 Cl -0.061 7.061 7 C -0.073 4.073 8 S -0.042 6.042 9 C -0.070 4.070 10 H 0.088 0.912 11 C -0.151 4.151 12 C 0.004 3.996 13 C -0.521 4.521 14 H 0.081 0.919 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.873 3.127 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.131 4.131 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 14.333 9.101 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.066 4.066 3 C -0.155 4.155 4 C -0.109 4.109 5 C -0.072 4.072 6 Cl -0.032 7.032 7 C -0.188 4.188 8 S 0.208 5.792 9 C -0.199 4.199 10 H 0.106 0.894 11 C -0.210 4.210 12 C -0.035 4.035 13 C -0.560 4.560 14 H 0.099 0.901 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.700 3.300 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.156 4.156 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.492 13.806 8.864 17.302 hybrid contribution -1.016 -0.619 0.474 1.281 sum -6.509 13.187 9.338 17.420 Atomic orbital electron populations 1.20806 0.90935 1.03001 1.02379 1.19872 0.96125 0.92760 0.97827 1.20848 0.93189 0.97614 1.03883 1.20888 0.94186 0.96203 0.99657 1.20350 0.84719 0.93423 1.08689 1.98362 1.09411 1.98578 1.96834 1.22213 0.96752 0.98304 1.01548 1.86258 1.12993 0.92140 1.87781 1.23584 0.98340 0.99235 0.98718 0.89406 1.22209 1.01311 1.01401 0.96098 1.19490 0.96326 0.88658 0.98991 1.21107 1.40584 1.00421 0.93846 0.90093 1.24966 0.94843 0.98399 0.94837 1.69902 1.41757 1.27189 1.14674 0.86884 0.77964 0.83157 0.81965 1.20258 1.21210 1.19001 1.21151 0.91971 0.98768 1.03748 0.91047 0.91395 0.91280 0.85533 0.85086 0.92873 0.91914 0.91770 0.95592 0.95126 0.92666 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.06 -0.79 5.88 -104.65 -0.62 -1.41 16 3 C -0.13 -1.54 9.69 -39.54 -0.38 -1.92 16 4 C -0.09 -1.14 9.82 -39.58 -0.39 -1.53 16 5 C -0.04 -0.59 6.34 -39.30 -0.25 -0.84 16 6 Cl -0.06 -0.95 27.84 -51.86 -1.44 -2.39 16 7 C -0.07 -1.24 5.99 -39.02 -0.23 -1.48 16 8 S -0.04 -0.83 19.52 -107.50 -2.10 -2.93 16 9 C -0.07 -1.34 1.98 -26.73 -0.05 -1.39 16 10 H 0.09 1.68 6.81 -51.93 -0.35 1.33 16 11 C -0.15 -2.33 8.72 37.16 0.32 -2.00 16 12 C 0.00 0.09 3.52 -27.88 -0.10 -0.01 16 13 C -0.52 -14.45 9.09 -34.44 -0.31 -14.77 16 14 H 0.08 2.45 7.84 -52.49 -0.41 2.04 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 17 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C -0.13 -1.96 7.72 -39.37 -0.30 -2.26 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 24 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 25 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.05 0.74 6.19 -51.93 -0.32 0.42 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 31 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.14 1.96 4.99 -52.49 -0.26 1.70 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -30.31 299.37 -9.21 -39.52 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.24 Total: -2.33 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -2.05 Total: -26.35 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: -0.83 SS G_CDS: -2.10 Total: -2.93 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.44 Total: -2.39 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.31 -9.21 -39.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307395135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.957 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds