Wall clock time and date at job start Mon Mar 30 2020 00:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.94814 * 2 1 4 4 C 1.38294 * 120.16534 * 180.27319 * 3 2 1 5 5 C 1.38189 * 120.06679 * 0.02562 * 4 3 2 6 6 Cl 1.73596 * 120.04837 * 180.02562 * 5 4 3 7 7 C 1.39043 * 119.90050 * 0.02562 * 5 4 3 8 8 S 1.76203 * 120.08567 * 179.97438 * 7 5 4 9 9 C 1.81396 * 103.00074 * 174.31793 * 8 7 5 10 10 H 1.08989 * 109.47414 * 49.24130 * 9 8 7 11 11 C 1.53000 * 109.46862 * 289.23852 * 9 8 7 12 12 C 1.53004 * 109.46861 * 169.24512 * 9 8 7 13 13 C 1.50707 * 109.46850 * 294.99700 * 12 9 8 14 14 H 1.07997 * 119.99541 * 0.02562 * 13 12 9 15 15 C 1.37871 * 119.99679 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99833 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00309 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47180 * 90.00250 * 17 15 13 19 19 H 1.48500 * 109.47131 * 210.00253 * 17 15 13 20 20 H 1.48497 * 109.47032 * 330.00405 * 17 15 13 21 21 C 1.38088 * 119.94913 * 180.27033 * 2 1 3 22 22 H 1.09000 * 109.46978 * 269.72707 * 1 2 3 23 23 H 1.09002 * 109.46936 * 29.72452 * 1 2 3 24 24 H 1.09000 * 109.47251 * 149.72837 * 1 2 3 25 25 H 1.07997 * 119.91938 * 0.25485 * 3 2 1 26 26 H 1.08008 * 119.96463 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.46898 * 54.42459 * 11 9 8 28 28 H 1.09002 * 109.47244 * 174.42405 * 11 9 8 29 29 H 1.09002 * 109.47568 * 294.42528 * 11 9 8 30 30 H 1.08997 * 109.47410 * 54.99510 * 12 9 8 31 31 H 1.09003 * 109.47083 * 174.99709 * 12 9 8 32 32 H 0.97003 * 120.00384 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.03812 * 359.71374 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1984 0.0000 4 6 3.5804 1.2036 -0.0057 5 6 4.2772 0.0103 -0.0120 6 17 6.0132 0.0175 -0.0184 7 6 3.5859 -1.1960 -0.0130 8 16 4.4695 -2.7205 -0.0217 9 6 3.1532 -3.9561 0.1547 10 1 2.3621 -3.7496 -0.5659 11 6 2.5812 -3.8930 1.5723 12 6 3.7259 -5.3514 -0.1025 13 6 4.1779 -5.4524 -1.5366 14 1 4.0681 -4.6058 -2.1982 15 6 4.7315 -6.6254 -2.0039 16 7 5.1265 -6.7133 -3.2553 17 14 4.9221 -8.0893 -0.8593 18 1 3.7003 -8.9310 -0.9245 19 1 6.0995 -8.8929 -1.2753 20 1 5.1177 -7.6078 0.5317 21 6 2.1964 -1.1965 -0.0056 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 0.8925 -0.5096 24 1 -0.3634 -0.8875 -0.5180 25 1 1.6553 2.1324 0.0042 26 1 4.1163 2.1414 -0.0061 27 1 2.2634 -2.8735 1.7908 28 1 1.7261 -4.5645 1.6494 29 1 3.3466 -4.1960 2.2869 30 1 4.5749 -5.5234 0.5590 31 1 2.9578 -6.1005 0.0900 32 1 5.5157 -7.5387 -3.5842 33 1 1.6562 -2.1316 -0.0054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307395135.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:09 Heat of formation + Delta-G solvation = -18.407715 kcal Electronic energy + Delta-G solvation = -15903.320215 eV Core-core repulsion = 13272.584023 eV Total energy + Delta-G solvation = -2630.736192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25353 -37.49456 -36.55456 -34.25336 -33.45618 -32.18106 -29.83753 -27.67308 -24.99161 -24.02512 -23.17844 -21.67891 -18.92049 -18.40687 -17.53850 -16.79109 -16.43805 -16.21404 -15.28649 -15.05739 -14.77726 -14.61664 -14.19774 -13.87596 -13.81830 -13.50908 -13.40587 -13.12986 -12.77471 -12.60996 -12.38496 -12.18600 -12.10786 -11.81209 -11.74722 -11.58959 -11.44683 -10.82077 -10.66803 -10.62803 -9.60105 -8.34098 -8.23173 -6.29967 0.10652 0.22551 0.60122 1.20750 1.34494 1.37911 1.47985 1.67360 2.35992 2.55863 3.08903 3.75506 3.92200 3.94424 4.10142 4.24432 4.30100 4.38159 4.48007 4.69456 4.81499 4.86554 4.87504 4.91660 5.03279 5.07240 5.17328 5.19341 5.24137 5.32090 5.54425 5.60012 5.85526 6.27887 6.76727 7.32489 8.90216 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.005711 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.349931 B = 4901.262914 C = 5569.528648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.119 4.119 4 C -0.088 4.088 5 C -0.056 4.056 6 Cl -0.072 7.072 7 C -0.088 4.088 8 S -0.118 6.118 9 C -0.056 4.056 10 H 0.080 0.920 11 C -0.140 4.140 12 C 0.006 3.994 13 C -0.521 4.521 14 H 0.038 0.962 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.944 3.056 18 H -0.262 1.262 19 H -0.288 1.288 20 H -0.248 1.248 21 C -0.143 4.143 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.188 15.633 11.132 21.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.108 4.108 5 C -0.089 4.089 6 Cl -0.043 7.043 7 C -0.202 4.202 8 S 0.130 5.870 9 C -0.184 4.184 10 H 0.099 0.901 11 C -0.199 4.199 12 C -0.033 4.033 13 C -0.559 4.559 14 H 0.056 0.944 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.767 3.233 18 H -0.186 1.186 19 H -0.214 1.214 20 H -0.171 1.171 21 C -0.168 4.168 22 H 0.107 0.893 23 H 0.108 0.892 24 H 0.085 0.915 25 H 0.185 0.815 26 H 0.175 0.825 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.720 15.140 10.913 20.197 hybrid contribution -0.416 -0.798 -0.225 0.927 sum -8.136 14.343 10.689 19.651 Atomic orbital electron populations 1.20890 0.88304 1.04027 1.03753 1.20300 0.98009 0.91996 0.96109 1.21367 0.92719 0.98947 1.00981 1.21273 0.95010 0.96039 0.98475 1.20637 0.84441 0.94114 1.09745 1.98352 1.10416 1.98600 1.96961 1.22051 0.97379 0.96487 1.04293 1.86306 1.15546 0.95491 1.89611 1.23403 0.97339 0.96632 1.01072 0.90148 1.22124 1.01752 1.02889 0.93152 1.19413 0.96636 0.91661 0.95553 1.21355 1.39893 0.98899 0.95772 0.94374 1.25933 0.94677 1.01937 0.96460 1.70070 1.43643 1.28259 1.17065 0.85758 0.78270 0.78999 0.80268 1.18645 1.21389 1.17108 1.21294 0.91216 1.00034 1.04241 0.89326 0.89184 0.91544 0.81460 0.82481 0.91488 0.89816 0.91684 0.95877 0.93590 0.92645 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.06 -1.35 5.88 -19.88 -0.12 -1.46 16 3 C -0.12 -2.27 9.69 22.30 0.22 -2.05 16 4 C -0.09 -2.01 9.82 22.27 0.22 -1.80 16 5 C -0.06 -1.71 6.34 22.45 0.14 -1.57 16 6 Cl -0.07 -2.29 27.84 -2.72 -0.08 -2.36 16 7 C -0.09 -2.98 5.99 22.63 0.14 -2.84 16 8 S -0.12 -4.81 19.52 -56.49 -1.10 -5.91 16 9 C -0.06 -2.15 1.98 30.60 0.06 -2.09 16 10 H 0.08 3.14 6.81 -2.40 -0.02 3.12 16 11 C -0.14 -4.09 8.72 71.98 0.63 -3.46 16 12 C 0.01 0.27 3.52 29.85 0.10 0.37 16 13 C -0.52 -29.86 9.09 25.60 0.23 -29.63 16 14 H 0.04 2.45 7.84 -2.91 -0.02 2.43 16 15 C 0.01 0.39 5.47 84.65 0.46 0.85 16 16 N -0.95 -60.31 13.96 21.44 0.30 -60.01 16 17 Si 0.94 44.12 27.47 68.60 1.88 46.00 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 21 C -0.14 -4.11 7.72 22.41 0.17 -3.94 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 24 H 0.07 1.02 8.08 -2.39 -0.02 1.01 16 25 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 26 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.07 1.76 6.19 -2.39 -0.01 1.75 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.02 1.07 7.20 -2.39 -0.02 1.06 16 31 H 0.05 1.97 7.57 -2.39 -0.02 1.95 16 32 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.13 3.76 4.99 -2.91 -0.01 3.75 16 Total: -1.00 -69.10 299.37 5.02 -64.08 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.05 Total: 6.74 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 2.97 Total: -48.54 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.30 Total: -60.01 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -1.10 Total: -5.91 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.36 kcal Total: -69.10 5.02 -64.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307395135.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.672 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds