Wall clock time and date at job start Mon Mar 30 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34950 * 126.04065 * 2 1 4 4 C 1.35318 * 107.74801 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91781 * 0.02562 * 4 3 2 6 6 S 1.76208 * 125.89501 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.40086 * 263.55163 * 6 5 4 8 8 O 1.42098 * 106.40144 * 36.47794 * 6 5 4 9 9 N 1.65604 * 107.21650 * 150.01582 * 6 5 4 10 10 C 1.36929 * 119.99881 * 89.99751 * 9 6 5 11 11 H 1.07995 * 120.00293 * 7.26999 * 10 9 6 12 12 C 1.38814 * 120.00109 * 187.26494 * 10 9 6 13 13 N 1.31624 * 119.99948 * 25.58045 * 12 10 9 14 14 Si 1.86802 * 120.00448 * 205.58455 * 12 10 9 15 15 H 1.48498 * 109.47033 * 89.99582 * 14 12 10 16 16 H 1.48499 * 109.47089 * 210.00212 * 14 12 10 17 17 H 1.48504 * 109.46764 * 329.99790 * 14 12 10 18 18 C 1.46503 * 119.99967 * 269.99867 * 9 6 5 19 19 C 1.47199 * 109.47220 * 93.30137 * 18 9 6 20 20 N 4.45141 * 103.87658 * 126.81775 * 2 1 3 21 21 N 1.30838 * 108.20651 * 359.97438 * 5 4 3 22 22 H 1.08992 * 109.47127 * 270.02436 * 1 2 3 23 23 H 1.09009 * 109.46990 * 30.02441 * 1 2 3 24 24 H 1.09003 * 109.47241 * 150.02141 * 1 2 3 25 25 H 1.08006 * 126.12567 * 359.95430 * 3 2 1 26 26 H 1.08001 * 126.03946 * 179.97438 * 4 3 2 27 27 H 0.96991 * 120.00477 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.46930 * 213.30608 * 18 9 6 29 29 H 1.09004 * 109.46932 * 333.30079 * 18 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 3.5346 -0.7321 -0.0015 6 16 4.9553 -1.7746 -0.0032 7 8 5.1873 -2.1344 -1.3581 8 8 5.9277 -1.1288 0.8070 9 7 4.5404 -3.1697 0.7866 10 6 4.0176 -4.2236 0.0860 11 1 3.9843 -4.1914 -0.9930 12 6 3.5304 -5.3335 0.7624 13 7 3.0987 -5.2128 2.0000 14 14 3.4875 -6.9985 -0.0834 15 1 4.7638 -7.7147 0.1685 16 1 2.3570 -7.7976 0.4538 17 1 3.3076 -6.8067 -1.5450 18 6 4.7328 -3.2764 2.2351 19 6 3.4911 -2.8901 2.9248 20 7 2.5325 -2.5897 3.4595 21 7 2.2891 -1.1328 -0.0010 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5135 25 1 1.9282 2.1194 -0.0007 26 1 4.4212 1.2962 -0.0011 27 1 2.7579 -5.9882 2.4726 28 1 4.9871 -4.3044 2.4930 29 1 5.5413 -2.6137 2.5440 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320140730.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:43 Heat of formation + Delta-G solvation = 54.949026 kcal Electronic energy + Delta-G solvation = -19002.975305 eV Core-core repulsion = 15863.463343 eV Total energy + Delta-G solvation = -3139.511962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.58693 -36.67993 -35.86780 -34.52952 -34.36484 -32.91530 -31.75502 -29.71927 -27.48449 -26.60213 -24.11668 -21.31500 -20.81381 -18.58684 -17.93378 -17.16473 -16.59093 -16.15261 -15.22524 -15.12643 -14.65716 -14.46679 -13.66444 -13.57344 -13.11152 -12.84058 -12.49839 -12.34894 -12.31136 -11.77308 -11.46470 -11.36730 -11.05674 -10.86129 -10.80697 -10.55956 -10.55700 -10.28627 -10.16092 -10.03157 -9.67355 -9.14641 -8.49065 -8.26323 -6.77234 -4.06225 1.54258 2.19540 2.87896 2.97207 3.08119 3.14654 3.20371 3.70903 3.97570 4.19076 4.47577 4.56406 4.82036 4.89201 5.07852 5.27205 5.38933 5.49856 5.70972 5.88138 6.04048 6.08611 6.26104 6.51352 6.81225 6.91268 7.17957 7.34574 7.95443 8.07355 8.44722 8.87687 8.93611 10.21718 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019034 B = 0.008772 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.718003 B = 3191.050587 C = 3492.681330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.377 5.377 3 C 0.031 3.969 4 C -0.214 4.214 5 C -0.462 4.462 6 S 2.545 3.455 7 O -0.971 6.971 8 O -0.989 6.989 9 N -0.784 5.784 10 C -0.228 4.228 11 H 0.130 0.870 12 C 0.030 3.970 13 N -0.829 5.829 14 Si 0.940 3.060 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.262 1.262 18 C 0.224 3.776 19 C 0.245 3.755 20 N -0.479 5.479 21 N -0.181 5.181 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.171 0.829 26 H 0.150 0.850 27 H 0.282 0.718 28 H 0.133 0.867 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 4.498 -1.554 5.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.161 5.161 3 C -0.114 4.114 4 C -0.244 4.244 5 C -0.703 4.703 6 S 2.638 3.362 7 O -0.960 6.960 8 O -0.977 6.977 9 N -0.607 5.607 10 C -0.377 4.377 11 H 0.147 0.853 12 C -0.183 4.183 13 N -0.469 5.469 14 Si 0.764 3.236 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.186 1.186 18 C 0.095 3.905 19 C -0.074 4.074 20 N -0.159 5.159 21 N -0.005 5.005 22 H 0.091 0.909 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.189 0.811 26 H 0.167 0.833 27 H 0.093 0.907 28 H 0.151 0.849 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.268 4.461 -1.040 5.627 hybrid contribution -0.446 0.385 -0.312 0.667 sum -3.715 4.846 -1.352 6.254 Atomic orbital electron populations 1.21814 0.74978 1.04105 1.03261 1.49108 1.06779 1.04762 1.55498 1.22433 0.91594 0.93112 1.04288 1.21133 0.97109 0.93040 1.13136 1.37019 1.14181 1.09672 1.09405 1.12110 0.77446 0.71954 0.74664 1.93386 1.85467 1.81466 1.35677 1.93363 1.59376 1.75929 1.69040 1.55501 1.71139 1.21040 1.13049 1.20322 1.35248 0.88762 0.93345 0.85304 1.25643 0.94599 1.01651 0.96381 1.69961 1.33515 1.31953 1.11514 0.85688 0.78297 0.79701 0.79888 1.19429 1.20797 1.18639 1.19042 0.87664 1.04734 0.79089 1.29507 0.95129 0.90028 0.92704 1.80902 1.10952 1.13368 1.10716 1.77542 0.99946 1.06592 1.16386 0.90882 0.89903 0.89230 0.81142 0.83269 0.90734 0.84940 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.30 11.47 59.84 0.69 1.99 15 2 N -0.38 -6.95 4.01 -68.16 -0.27 -7.23 15 3 C 0.03 0.51 11.49 -17.22 -0.20 0.31 15 4 C -0.21 -4.19 10.71 -40.01 -0.43 -4.62 15 5 C -0.46 -10.49 7.21 -17.37 -0.13 -10.61 15 6 S 2.54 59.28 5.80 -107.50 -0.62 58.66 15 7 O -0.97 -24.68 16.79 -57.17 -0.96 -25.64 15 8 O -0.99 -23.26 16.54 -57.17 -0.95 -24.21 15 9 N -0.78 -17.90 2.88 -62.77 -0.18 -18.08 15 10 C -0.23 -5.32 9.47 -15.06 -0.14 -5.46 15 11 H 0.13 3.05 7.22 -52.49 -0.38 2.67 15 12 C 0.03 0.66 4.91 -17.43 -0.09 0.58 15 13 N -0.83 -19.11 8.99 55.49 0.50 -18.61 15 14 Si 0.94 17.72 29.62 -169.99 -5.04 12.68 15 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.28 -5.40 7.11 56.52 0.40 -4.99 15 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 18 C 0.22 4.67 5.45 -6.83 -0.04 4.64 15 19 C 0.25 5.68 13.30 -20.70 -0.28 5.40 15 20 N -0.48 -11.83 18.55 42.23 0.78 -11.05 15 21 N -0.18 -4.14 12.58 31.27 0.39 -3.75 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.08 0.75 8.14 -51.92 -0.42 0.33 15 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.17 1.96 8.06 -52.48 -0.42 1.53 15 26 H 0.15 2.56 8.06 -52.49 -0.42 2.13 15 27 H 0.28 6.19 8.31 -40.82 -0.34 5.85 15 28 H 0.13 2.61 6.47 -51.93 -0.34 2.27 15 29 H 0.10 1.88 6.95 -51.93 -0.36 1.52 15 LS Contribution 280.58 15.07 4.23 4.23 Total: -1.00 -32.33 280.58 -5.05 -37.38 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -2.32 Total: 3.40 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.61 Total: -7.77 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 1.22 Total: -58.72 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.91 Total: -49.85 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.04 Total: 12.68 kcal Atomic # 16 Polarization: 59.28 SS G_CDS: -0.62 Total: 58.66 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.33 -5.05 -37.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320140730.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.326 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds