Wall clock time and date at job start Mon Mar 30 2020 01:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47507 * 240.00470 * 3 2 1 5 5 H 1.48507 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47441 * 120.00059 * 3 2 1 7 7 C 1.37877 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46822 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.42099 * 109.47330 * 296.38874 * 11 10 9 13 13 C 1.81400 * 103.00326 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47363 * 179.97438 * 13 11 10 15 15 N 1.31127 * 126.54670 * 90.00503 * 14 13 11 16 16 C 1.34495 * 105.61179 * 180.02562 * 15 14 13 17 17 C 1.50702 * 126.28849 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49830 * 188.61459 * 17 16 15 19 19 C 1.52999 * 60.00268 * 252.51311 * 18 17 16 20 20 N 1.29945 * 107.42708 * 359.97438 * 16 15 14 21 21 O 1.21307 * 110.24871 * 359.70716 * 20 16 15 22 22 H 0.96993 * 120.00139 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46778 * 60.00310 * 9 7 2 24 24 H 1.08996 * 109.47313 * 299.99976 * 9 7 2 25 25 H 1.08998 * 109.47375 * 60.00450 * 10 9 7 26 26 H 1.09006 * 109.47492 * 300.00036 * 10 9 7 27 27 H 1.09003 * 109.47158 * 300.00684 * 13 11 10 28 28 H 1.09000 * 109.46902 * 59.99718 * 13 11 10 29 29 H 1.08995 * 115.55162 * 334.32838 * 17 16 15 30 30 H 1.09001 * 117.49852 * 0.02562 * 18 17 16 31 31 H 1.09005 * 117.49547 * 145.01963 * 18 17 16 32 32 H 1.09005 * 117.49828 * 252.51605 * 19 18 17 33 33 H 1.08996 * 117.51821 * 107.47959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.5855 -5.3459 1.1985 13 6 2.6651 -6.4702 -0.0020 14 6 2.0636 -7.8519 -0.0020 15 7 1.7516 -8.5677 -1.0555 16 6 1.2498 -9.7192 -0.5750 17 6 0.7430 -10.8806 -1.3909 18 6 0.0293 -12.0098 -0.6450 19 6 1.4364 -12.2316 -1.2034 20 7 1.2821 -9.6466 0.7220 21 8 1.7518 -8.5842 1.0715 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5572 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 3.2813 -6.3416 -0.8919 28 1 3.2813 -6.3426 0.8880 29 1 0.3859 -10.6326 -2.3904 30 1 -0.0741 -11.9126 0.4357 31 1 -0.7979 -12.5049 -1.1539 32 1 1.5350 -12.8725 -2.0796 33 1 2.2593 -12.2802 -0.4903 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320815257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:20 Heat of formation + Delta-G solvation = 50.760320 kcal Electronic energy + Delta-G solvation = -17453.223309 eV Core-core repulsion = 14417.070055 eV Total energy + Delta-G solvation = -3036.153255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.64466 -37.94445 -35.55919 -35.44728 -33.75588 -33.17875 -30.98315 -29.03532 -25.45847 -25.39159 -23.48182 -22.74824 -21.46291 -20.49903 -18.31766 -17.80243 -17.20639 -16.52877 -15.93618 -15.47646 -14.86827 -14.75542 -14.65766 -14.40646 -13.57479 -13.46123 -12.76435 -12.44200 -12.38354 -12.24755 -11.93995 -11.83772 -11.46578 -11.20967 -11.09587 -10.97239 -10.87063 -10.81080 -10.31776 -10.22513 -9.90310 -9.53468 -9.14479 -8.46267 -7.93528 -6.09220 -4.14132 0.87583 1.65316 2.16209 2.66836 2.92443 3.27810 3.28173 3.33406 3.35071 3.47509 3.86032 4.08860 4.38868 4.43985 4.50427 4.58953 4.84903 5.11934 5.24042 5.26010 5.32973 5.43899 5.64403 5.69744 5.74375 5.81661 5.87573 6.00058 6.68054 7.41381 7.51871 7.84979 8.07727 8.24654 8.90207 9.50465 11.01377 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062499 B = 0.003115 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.896899 B = 8987.790816 C = 9040.066519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.414 4.414 11 S 1.244 4.756 12 O -0.831 6.831 13 C -0.380 4.380 14 C 0.215 3.785 15 N -0.474 5.474 16 C 0.200 3.800 17 C -0.077 4.077 18 C -0.160 4.160 19 C -0.158 4.158 20 N -0.386 5.386 21 O 0.078 5.922 22 H 0.264 0.736 23 H 0.030 0.970 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.159 0.841 28 H 0.120 0.880 29 H 0.139 0.861 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -20.271 -5.943 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.554 4.554 11 S 1.440 4.560 12 O -0.826 6.826 13 C -0.512 4.512 14 C -0.005 4.005 15 N -0.209 5.209 16 C -0.072 4.072 17 C -0.096 4.096 18 C -0.197 4.197 19 C -0.196 4.196 20 N -0.095 5.095 21 O 0.020 5.980 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.131 0.869 27 H 0.177 0.823 28 H 0.138 0.862 29 H 0.156 0.844 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.484 -21.102 -5.808 22.028 hybrid contribution 1.964 1.459 1.882 3.087 sum 4.449 -19.643 -3.927 20.519 Atomic orbital electron populations 1.69939 1.06081 1.27121 1.49905 1.25043 0.94921 0.99395 0.95055 0.86585 0.79536 0.82797 0.78663 1.20038 1.21160 1.20268 1.21080 0.93013 0.90243 1.51746 0.92372 1.18818 0.92966 0.90019 0.98333 1.27624 1.09777 1.11325 1.06703 1.71462 0.85758 0.86954 1.11824 1.93127 1.54901 1.83780 1.50754 1.26750 1.16639 0.97212 1.10584 1.27604 0.95641 0.96510 0.80749 1.71842 1.17859 1.03077 1.28169 1.24778 0.99414 0.95202 0.87852 1.20072 1.05918 0.84364 0.99291 1.23088 0.95869 0.99521 1.01253 1.23073 0.96453 0.96349 1.03729 1.74570 1.17773 1.01593 1.15534 1.85338 1.56996 1.20047 1.35604 0.92626 0.95147 0.95751 0.90235 0.86924 0.82345 0.86161 0.84371 0.87829 0.87346 0.87320 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.91 4.98 -27.88 -0.14 0.77 16 10 C -0.41 -7.29 5.86 37.16 0.22 -7.08 16 11 S 1.24 18.58 13.14 -107.50 -1.41 17.17 16 12 O -0.83 -17.82 18.14 -35.23 -0.64 -18.46 16 13 C -0.38 -4.34 6.55 36.01 0.24 -4.10 16 14 C 0.21 3.01 7.77 -13.06 -0.10 2.91 16 15 N -0.47 -6.60 11.55 -9.87 -0.11 -6.71 16 16 C 0.20 2.72 7.74 -156.37 -1.21 1.51 16 17 C -0.08 -0.75 6.33 -91.77 -0.58 -1.33 16 18 C -0.16 -1.29 10.14 -26.73 -0.27 -1.56 16 19 C -0.16 -1.21 10.23 -26.73 -0.27 -1.48 16 20 N -0.39 -5.87 11.77 30.90 0.36 -5.51 16 21 O 0.08 1.23 11.31 18.11 0.20 1.43 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.11 1.63 8.14 -51.92 -0.42 1.20 16 27 H 0.16 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.12 1.28 8.14 -51.92 -0.42 0.85 16 29 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 0.98 7.91 -51.93 -0.41 0.57 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -35.83 309.61 -7.93 -43.76 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.18 Total: -3.60 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: -2.53 Total: -23.27 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.99 Total: -37.70 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.43 Total: -17.02 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 18.58 SS G_CDS: -1.41 Total: 17.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.83 -7.93 -43.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320815257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.518 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds