Wall clock time and date at job start Mon Mar 30 2020 01:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47507 * 240.00470 * 3 2 1 5 5 H 1.48507 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47441 * 120.00059 * 3 2 1 7 7 C 1.37877 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99768 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46822 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.46912 * 180.02562 * 10 9 7 12 12 O 1.42099 * 109.47330 * 296.38874 * 11 10 9 13 13 C 1.81400 * 103.00326 * 179.97438 * 11 10 9 14 14 C 1.50701 * 109.47363 * 179.97438 * 13 11 10 15 15 N 1.31127 * 126.54670 * 90.00503 * 14 13 11 16 16 C 1.34495 * 105.61179 * 180.02562 * 15 14 13 17 17 C 1.50702 * 126.28849 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49830 * 188.61459 * 17 16 15 19 19 C 1.52999 * 60.00268 * 252.51311 * 18 17 16 20 20 N 1.29945 * 107.42708 * 359.97438 * 16 15 14 21 21 O 1.21307 * 110.24871 * 359.70716 * 20 16 15 22 22 H 0.96993 * 120.00139 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46778 * 60.00310 * 9 7 2 24 24 H 1.08996 * 109.47313 * 299.99976 * 9 7 2 25 25 H 1.08998 * 109.47375 * 60.00450 * 10 9 7 26 26 H 1.09006 * 109.47492 * 300.00036 * 10 9 7 27 27 H 1.09003 * 109.47158 * 300.00684 * 13 11 10 28 28 H 1.09000 * 109.46902 * 59.99718 * 13 11 10 29 29 H 1.08995 * 115.55162 * 334.32838 * 17 16 15 30 30 H 1.09001 * 117.49852 * 0.02562 * 18 17 16 31 31 H 1.09005 * 117.49547 * 145.01963 * 18 17 16 32 32 H 1.09005 * 117.49828 * 252.51605 * 19 18 17 33 33 H 1.08996 * 117.51821 * 107.47959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.5855 -5.3459 1.1985 13 6 2.6651 -6.4702 -0.0020 14 6 2.0636 -7.8519 -0.0020 15 7 1.7516 -8.5677 -1.0555 16 6 1.2498 -9.7192 -0.5750 17 6 0.7430 -10.8806 -1.3909 18 6 0.0293 -12.0098 -0.6450 19 6 1.4364 -12.2316 -1.2034 20 7 1.2821 -9.6466 0.7220 21 8 1.7518 -8.5842 1.0715 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5572 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 3.2813 -6.3416 -0.8919 28 1 3.2813 -6.3426 0.8880 29 1 0.3859 -10.6326 -2.3904 30 1 -0.0741 -11.9126 0.4357 31 1 -0.7979 -12.5049 -1.1539 32 1 1.5350 -12.8725 -2.0796 33 1 2.2593 -12.2802 -0.4903 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320815257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:20 Heat of formation + Delta-G solvation = 23.718812 kcal Electronic energy + Delta-G solvation = -17454.395917 eV Core-core repulsion = 14417.070055 eV Total energy + Delta-G solvation = -3037.325862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.73101 -38.68871 -36.96222 -36.57939 -35.71268 -34.21878 -32.86753 -30.10235 -27.32433 -26.37431 -24.55112 -23.35508 -23.19804 -21.49142 -19.44137 -18.87568 -18.74245 -18.24797 -16.76486 -16.65556 -16.38484 -16.20324 -15.95054 -15.47684 -14.95726 -14.66127 -14.28658 -13.86733 -13.45758 -13.40193 -13.18507 -12.98637 -12.79624 -12.62717 -12.51076 -12.25603 -12.22223 -11.96089 -11.81251 -11.53102 -11.49586 -11.07567 -10.59732 -10.56585 -9.27855 -8.19364 -6.32202 -0.28286 0.50839 1.10766 1.42808 1.45474 1.53368 1.55735 1.74691 2.34105 2.42288 2.73009 2.76498 3.06278 3.13722 3.61932 3.77578 3.93534 3.96266 4.26774 4.32373 4.47761 4.49603 4.67654 4.69037 4.77077 4.92841 5.03951 5.04919 5.14909 5.46244 5.53153 5.79460 6.18709 6.83517 6.98783 7.37490 8.91558 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062499 B = 0.003115 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.896899 B = 8987.790816 C = 9040.066519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.032 3.968 10 C -0.412 4.412 11 S 1.291 4.709 12 O -0.905 6.905 13 C -0.364 4.364 14 C 0.207 3.793 15 N -0.476 5.476 16 C 0.200 3.800 17 C -0.100 4.100 18 C -0.156 4.156 19 C -0.141 4.141 20 N -0.408 5.408 21 O 0.051 5.949 22 H 0.264 0.736 23 H 0.025 0.975 24 H -0.024 1.024 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.208 0.792 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 -21.315 -7.806 23.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.578 4.578 8 H 0.089 0.911 9 C -0.006 4.006 10 C -0.551 4.551 11 S 1.490 4.510 12 O -0.900 6.900 13 C -0.499 4.499 14 C -0.013 4.013 15 N -0.211 5.211 16 C -0.073 4.073 17 C -0.119 4.119 18 C -0.193 4.193 19 C -0.180 4.180 20 N -0.122 5.122 21 O -0.002 6.002 22 H 0.073 0.927 23 H 0.043 0.957 24 H -0.006 1.006 25 H 0.094 0.906 26 H 0.172 0.828 27 H 0.225 0.775 28 H 0.154 0.846 29 H 0.175 0.825 30 H 0.102 0.898 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.478 -22.096 -7.659 23.810 hybrid contribution 1.376 1.615 2.425 3.223 sum 5.854 -20.480 -5.233 21.934 Atomic orbital electron populations 1.70089 1.07940 1.28030 1.51428 1.26038 0.95765 1.03577 0.94754 0.85472 0.78200 0.77894 0.79318 1.18156 1.21236 1.19770 1.21637 0.93888 0.91525 1.50736 0.91130 1.18683 0.93811 0.92391 0.95765 1.27483 1.08622 1.10472 1.08537 1.70685 0.85256 0.85754 1.09273 1.93022 1.58911 1.84974 1.53084 1.26647 1.15151 0.94173 1.13889 1.28047 0.95502 0.97215 0.80549 1.71867 1.17952 1.03278 1.28045 1.25546 0.98051 0.95918 0.87744 1.20430 1.07690 0.83972 0.99829 1.23168 0.97237 0.98632 1.00310 1.23177 0.95660 0.94792 1.04321 1.74580 1.19082 1.01875 1.16614 1.85307 1.57752 1.20637 1.36536 0.92676 0.95716 1.00551 0.90604 0.82808 0.77520 0.84617 0.82508 0.89781 0.84687 0.84313 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.23 9.11 25.60 0.23 -29.00 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.59 4.98 29.85 0.15 1.74 16 10 C -0.41 -14.02 5.86 71.98 0.42 -13.59 16 11 S 1.29 37.64 13.14 -56.49 -0.74 36.90 16 12 O -0.90 -40.06 18.14 -148.98 -2.70 -42.76 16 13 C -0.36 -7.28 6.55 71.24 0.47 -6.81 16 14 C 0.21 5.50 7.77 88.38 0.69 6.19 16 15 N -0.48 -12.44 11.55 -303.20 -3.50 -15.94 16 16 C 0.20 5.23 7.74 138.46 1.07 6.30 16 17 C -0.10 -1.75 6.33 -11.54 -0.07 -1.82 16 18 C -0.16 -2.23 10.14 30.59 0.31 -1.92 16 19 C -0.14 -1.82 10.23 30.60 0.31 -1.51 16 20 N -0.41 -12.45 11.77 -60.32 -0.71 -13.16 16 21 O 0.05 1.60 11.31 74.86 0.85 2.45 16 22 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 23 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 24 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 25 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.15 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.21 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 1.56 7.91 -2.39 -0.02 1.54 16 31 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -81.66 309.61 0.66 -81.00 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.11 Total: 2.73 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.04 Total: -40.15 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -3.93 Total: -85.18 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.86 Total: -40.31 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 37.64 SS G_CDS: -0.74 Total: 36.90 kcal Total: -81.66 0.66 -81.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320815257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.721 kcal (2) G-P(sol) polarization free energy of solvation -81.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds