Wall clock time and date at job start Mon Mar 30 2020 01:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47145 * 179.97438 * 10 9 7 12 12 O 1.42097 * 109.47307 * 63.60458 * 11 10 9 13 13 C 1.81401 * 103.00097 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.46970 * 179.97438 * 13 11 10 15 15 N 1.31128 * 126.55148 * 90.00369 * 14 13 11 16 16 C 1.34495 * 105.61212 * 179.97438 * 15 14 13 17 17 C 1.50700 * 126.28618 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.50078 * 188.61917 * 17 16 15 19 19 C 1.53002 * 117.49994 * 119.99495 * 17 16 15 20 20 N 1.29941 * 107.42742 * 359.97438 * 16 15 14 21 21 O 1.21301 * 110.24818 * 359.70552 * 20 16 15 22 22 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 24 24 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 27 27 H 1.09007 * 109.46813 * 299.99841 * 13 11 10 28 28 H 1.08998 * 109.47330 * 59.99409 * 13 11 10 29 29 H 1.09005 * 115.54965 * 334.33087 * 17 16 15 30 30 H 1.08996 * 117.49761 * 0.02562 * 18 17 16 31 31 H 1.09001 * 117.49528 * 145.01922 * 18 17 16 32 32 H 1.09001 * 117.50118 * 214.97732 * 19 17 16 33 33 H 1.09003 * 117.49634 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.5853 -5.3459 -1.1984 13 6 2.6650 -6.4702 0.0004 14 6 2.0633 -7.8519 0.0016 15 7 1.7505 -8.5683 -1.0512 16 6 1.2499 -9.7200 -0.5696 17 6 0.7430 -10.8820 -1.3844 18 6 0.0307 -12.0114 -0.6373 19 6 1.4374 -12.2324 -1.1973 20 7 1.2838 -9.6469 0.7273 21 8 1.7533 -8.5840 1.0757 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 -0.8895 26 1 2.8719 -3.6043 0.8905 27 1 3.2805 -6.3423 -0.8901 28 1 3.2818 -6.3422 0.8899 29 1 0.3845 -10.6346 -2.3836 30 1 -0.0715 -11.9138 0.4434 31 1 -0.7967 -12.5071 -1.1450 32 1 1.5353 -12.8737 -2.0732 33 1 2.2612 -12.2803 -0.4851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320815258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:21 Heat of formation + Delta-G solvation = 23.078398 kcal Electronic energy + Delta-G solvation = -17460.854824 eV Core-core repulsion = 14423.501191 eV Total energy + Delta-G solvation = -3037.353633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.72459 -38.71882 -36.94033 -36.58230 -35.70695 -34.21208 -32.85893 -30.08204 -27.31931 -26.39802 -24.56733 -23.39279 -23.18539 -21.48793 -19.42735 -18.84966 -18.75029 -18.26789 -16.80936 -16.67447 -16.42694 -16.16750 -15.89621 -15.45098 -15.02738 -14.56583 -14.31044 -13.87110 -13.44374 -13.42999 -13.16077 -12.99567 -12.82719 -12.58762 -12.53505 -12.25514 -12.19540 -11.94526 -11.81789 -11.58516 -11.48494 -11.06645 -10.57790 -10.55531 -9.27546 -8.19438 -6.32026 -0.24741 0.52181 1.12585 1.42808 1.43629 1.54891 1.56740 1.71516 2.42177 2.42912 2.69941 2.80649 2.99820 3.13819 3.58591 3.72750 3.92761 4.08673 4.18485 4.33088 4.46504 4.51061 4.63818 4.68582 4.79862 4.90885 4.99826 5.05960 5.11382 5.47080 5.53972 5.80018 6.19180 6.84013 7.03167 7.37674 8.91665 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.065092 B = 0.003131 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.056901 B = 8940.772596 C = 9069.719896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.412 4.412 11 S 1.295 4.705 12 O -0.902 6.902 13 C -0.364 4.364 14 C 0.209 3.791 15 N -0.513 5.513 16 C 0.192 3.808 17 C -0.111 4.111 18 C -0.146 4.146 19 C -0.140 4.140 20 N -0.396 5.396 21 O 0.090 5.910 22 H 0.264 0.736 23 H -0.025 1.025 24 H 0.026 0.974 25 H 0.072 0.928 26 H 0.156 0.844 27 H 0.131 0.869 28 H 0.212 0.788 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -21.343 4.696 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.178 1.178 7 C -0.576 4.576 8 H 0.088 0.912 9 C -0.007 4.007 10 C -0.552 4.552 11 S 1.494 4.506 12 O -0.898 6.898 13 C -0.499 4.499 14 C -0.011 4.011 15 N -0.248 5.248 16 C -0.079 4.079 17 C -0.131 4.131 18 C -0.183 4.183 19 C -0.178 4.178 20 N -0.104 5.104 21 O 0.031 5.969 22 H 0.073 0.927 23 H -0.007 1.007 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.174 0.826 27 H 0.150 0.850 28 H 0.229 0.771 29 H 0.155 0.845 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.514 -22.154 4.769 23.106 hybrid contribution 1.341 1.651 -2.167 3.037 sum 5.855 -20.502 2.603 21.480 Atomic orbital electron populations 1.70101 1.07929 1.27937 1.51545 1.26038 0.95767 1.03570 0.94803 0.85424 0.79016 0.78348 0.78127 1.20700 1.20753 1.17804 1.21667 0.93885 0.91539 1.50526 0.91151 1.18689 0.93820 0.92409 0.95760 1.27497 1.08614 1.10568 1.08484 1.70408 0.85118 0.85673 1.09418 1.93036 1.58918 1.84817 1.52992 1.26641 1.15277 0.94143 1.13865 1.27922 0.95497 0.97127 0.80598 1.71926 1.18414 1.04347 1.30123 1.25347 0.98951 0.95530 0.88089 1.20326 1.08538 0.84664 0.99592 1.23176 0.96872 0.97609 1.00670 1.23179 0.96099 0.94256 1.04309 1.74497 1.18527 1.01981 1.15426 1.85265 1.57019 1.19723 1.34860 0.92700 1.00694 0.95567 0.90925 0.82602 0.85041 0.77136 0.84507 0.88633 0.85035 0.84900 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.54 -29.10 9.11 25.60 0.23 -28.86 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.57 4.98 29.85 0.15 1.72 16 10 C -0.41 -13.93 5.86 71.98 0.42 -13.51 16 11 S 1.30 37.15 13.14 -56.49 -0.74 36.41 16 12 O -0.90 -40.39 18.14 -148.98 -2.70 -43.09 16 13 C -0.36 -7.16 6.55 71.24 0.47 -6.69 16 14 C 0.21 5.47 7.77 88.38 0.69 6.15 16 15 N -0.51 -16.35 11.55 -303.24 -3.50 -19.85 16 16 C 0.19 5.43 7.74 138.46 1.07 6.50 16 17 C -0.11 -2.34 6.33 -11.54 -0.07 -2.41 16 18 C -0.15 -2.21 10.14 30.60 0.31 -1.90 16 19 C -0.14 -2.04 10.23 30.60 0.31 -1.73 16 20 N -0.40 -10.78 11.77 -60.35 -0.71 -11.49 16 21 O 0.09 2.23 11.31 74.87 0.85 3.07 16 22 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 23 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.16 3.84 8.14 -2.39 -0.02 3.82 16 27 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 28 H 0.21 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.14 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.10 1.64 7.91 -2.39 -0.02 1.62 16 31 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -83.78 309.61 0.66 -83.12 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.11 Total: 3.33 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 4.04 Total: -40.48 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.93 Total: -87.39 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.86 Total: -40.02 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 37.15 SS G_CDS: -0.74 Total: 36.41 kcal Total: -83.78 0.66 -83.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320815258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.202 kcal (2) G-P(sol) polarization free energy of solvation -83.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds