Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 117.00104 * 2 1 4 4 C 1.41847 * 126.77990 * 180.02562 * 3 2 1 5 5 C 1.36729 * 103.80044 * 179.73724 * 4 3 2 6 6 C 1.47405 * 126.88489 * 180.26116 * 5 4 3 7 7 O 1.21504 * 120.00430 * 0.02562 * 6 5 4 8 8 O 1.34780 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00401 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.47130 * 180.02562 * 9 8 6 11 11 O 1.21290 * 119.99788 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99904 * 180.02562 * 10 9 8 13 13 C 1.37099 * 120.00048 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99804 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99969 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00235 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99902 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47015 * 90.00085 * 17 15 13 19 19 H 1.48505 * 109.46842 * 210.00223 * 17 15 13 20 20 H 1.48498 * 109.47010 * 330.00221 * 17 15 13 21 21 O 1.34680 * 106.22734 * 0.23926 * 5 4 3 22 22 N 1.20874 * 111.63207 * 0.02562 * 21 5 4 23 23 H 1.08995 * 109.47016 * 60.00141 * 1 2 3 24 24 H 1.09006 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47106 * 300.00087 * 1 2 3 26 26 H 1.08002 * 128.10317 * 0.02562 * 4 3 2 27 27 H 1.08998 * 109.47003 * 299.99723 * 9 8 6 28 28 H 1.08998 * 109.46735 * 60.00220 * 9 8 6 29 29 H 0.97010 * 120.00346 * 0.02562 * 12 10 9 30 30 H 0.96999 * 120.00231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4503 -0.0005 5 6 3.5390 2.8142 -0.0064 6 6 4.7771 3.6141 -0.0147 7 8 5.8584 3.0599 -0.0175 8 8 4.7099 4.9602 -0.0193 9 6 5.9690 5.6832 -0.0269 10 6 5.6971 7.1655 -0.0305 11 8 4.5546 7.5724 -0.0275 12 7 6.7236 8.0388 -0.0381 13 6 6.4763 9.3873 -0.0420 14 1 5.4589 9.7497 -0.0384 15 6 7.5345 10.2877 -0.0493 16 7 8.7725 9.8467 -0.0530 17 14 7.1975 12.1251 -0.0538 18 1 7.1141 12.6164 1.3451 19 1 8.2980 12.8284 -0.7608 20 1 5.9127 12.3909 -0.7492 21 8 2.2754 3.2803 -0.0035 22 7 1.4685 2.3804 0.0037 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.2442 0.7260 -0.0014 27 1 6.5434 5.4217 0.8618 28 1 6.5363 5.4153 -0.9182 29 1 7.6374 7.7133 -0.0417 30 1 9.5112 10.4752 -0.0585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324107600.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = -78.813292 kcal Electronic energy + Delta-G solvation = -19457.810646 eV Core-core repulsion = 15837.452693 eV Total energy + Delta-G solvation = -3620.357954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.27285 -40.42700 -39.21842 -38.20677 -36.41905 -34.03390 -33.56201 -32.26794 -31.40381 -28.65274 -27.99889 -25.22197 -24.10803 -23.61572 -21.32251 -19.66577 -19.29841 -18.25190 -18.12076 -17.14900 -16.97988 -16.46683 -16.41863 -15.80653 -15.61005 -15.06098 -14.57108 -14.13414 -14.03723 -13.93260 -13.16686 -12.61671 -12.48111 -12.25940 -12.22308 -11.74978 -11.63225 -11.15105 -11.00651 -10.61639 -10.44710 -10.31179 -10.22784 -9.67754 -9.62398 -8.56726 -8.10475 -6.51799 -3.93845 0.33748 1.74806 1.96353 2.28807 2.48637 3.00395 3.12661 3.23447 3.29791 3.70164 3.75307 4.10148 4.38077 4.55015 4.66051 4.77957 4.83539 4.92996 5.10264 5.12197 5.27962 5.40088 5.60057 5.95555 6.24779 6.53082 7.37174 7.46641 7.76733 7.91700 8.45674 9.05281 9.36427 9.86029 10.65322 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.055462 B = 0.003087 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.726599 B = 9067.043532 C = 9551.311524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.280 6.280 3 C 0.201 3.799 4 C -0.146 4.146 5 C -0.030 4.030 6 C 0.552 3.448 7 O -0.478 6.478 8 O -0.307 6.307 9 C 0.060 3.940 10 C 0.437 3.563 11 O -0.572 6.572 12 N -0.551 5.551 13 C -0.302 4.302 14 H 0.107 0.893 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.268 1.268 21 O 0.144 5.856 22 N -0.382 5.382 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.195 0.805 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.395 0.605 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 -17.535 0.065 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.004 3.996 4 C -0.168 4.168 5 C -0.095 4.095 6 C 0.393 3.607 7 O -0.366 6.366 8 O -0.220 6.220 9 C -0.017 4.017 10 C 0.221 3.779 11 O -0.456 6.456 12 N -0.188 5.188 13 C -0.431 4.431 14 H 0.125 0.875 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.761 3.239 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 O 0.074 5.926 22 N -0.103 5.103 23 H 0.080 0.920 24 H 0.126 0.874 25 H 0.080 0.920 26 H 0.212 0.788 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.229 0.771 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.103 -17.194 0.067 19.942 hybrid contribution 1.075 0.233 0.006 1.100 sum -9.028 -16.961 0.074 19.214 Atomic orbital electron populations 1.23131 0.76371 1.04347 1.02674 1.86215 1.22912 1.20136 1.89415 1.21801 0.90427 0.85969 1.01388 1.22139 0.94824 0.94199 1.05619 1.22635 0.86158 0.92174 1.08486 1.19071 0.85559 0.82053 0.74000 1.90944 1.27185 1.72930 1.45495 1.86686 1.36443 1.16761 1.82110 1.22951 0.82420 0.92195 1.04136 1.19228 0.86633 0.85668 0.86336 1.90592 1.21072 1.78854 1.55072 1.41687 1.07350 1.06050 1.63754 1.19734 0.95210 0.79982 1.48200 0.87539 1.25315 0.94564 1.01015 0.96825 1.69610 0.98357 1.36186 1.49577 0.85793 0.78240 0.81389 0.78515 1.20241 1.20813 1.19239 1.85141 1.11316 1.28941 1.67209 1.74075 1.16023 0.96680 1.23533 0.91974 0.87393 0.91980 0.78768 0.88837 0.88830 0.77107 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.28 -2.83 10.57 -18.90 -0.20 -3.03 16 3 C 0.20 2.35 7.99 -16.72 -0.13 2.22 16 4 C -0.15 -1.61 10.97 -38.75 -0.43 -2.03 16 5 C -0.03 -0.39 7.36 -36.40 -0.27 -0.66 16 6 C 0.55 8.32 7.96 34.46 0.27 8.59 16 7 O -0.48 -7.47 16.70 -19.27 -0.32 -7.80 16 8 O -0.31 -5.48 9.77 -47.72 -0.47 -5.95 16 9 C 0.06 1.07 5.96 36.01 0.21 1.28 16 10 C 0.44 10.19 7.86 -10.99 -0.09 10.11 16 11 O -0.57 -15.64 16.08 -14.11 -0.23 -15.87 16 12 N -0.55 -13.53 5.29 -10.97 -0.06 -13.59 16 13 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 14 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -23.64 13.05 55.50 0.72 -22.92 16 17 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 O 0.14 2.05 11.22 15.45 0.17 2.22 16 22 N -0.38 -5.08 11.50 30.47 0.35 -4.73 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.40 9.12 7.90 -40.82 -0.32 8.79 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 291.18 15.07 4.39 4.39 Total: -1.00 -31.70 291.18 -2.61 -34.31 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -2.37 Total: 4.51 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 0.42 Total: 13.02 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 1.02 Total: -41.24 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.04 Total: -30.43 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.70 -2.61 -34.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324107600.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.500 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds