Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35732 * 117.00104 * 2 1 4 4 C 1.41847 * 126.77990 * 180.02562 * 3 2 1 5 5 C 1.36729 * 103.80044 * 179.73724 * 4 3 2 6 6 C 1.47405 * 126.88489 * 180.26116 * 5 4 3 7 7 O 1.21504 * 120.00430 * 0.02562 * 6 5 4 8 8 O 1.34780 * 120.00240 * 180.02562 * 6 5 4 9 9 C 1.45198 * 117.00401 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.47130 * 180.02562 * 9 8 6 11 11 O 1.21290 * 119.99788 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99904 * 180.02562 * 10 9 8 13 13 C 1.37099 * 120.00048 * 179.97438 * 12 10 9 14 14 H 1.07995 * 119.99804 * 0.02562 * 13 12 10 15 15 C 1.38948 * 119.99969 * 179.97438 * 13 12 10 16 16 N 1.31414 * 120.00235 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99902 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47015 * 90.00085 * 17 15 13 19 19 H 1.48505 * 109.46842 * 210.00223 * 17 15 13 20 20 H 1.48498 * 109.47010 * 330.00221 * 17 15 13 21 21 O 1.34680 * 106.22734 * 0.23926 * 5 4 3 22 22 N 1.20874 * 111.63207 * 0.02562 * 21 5 4 23 23 H 1.08995 * 109.47016 * 60.00141 * 1 2 3 24 24 H 1.09006 * 109.47103 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47106 * 300.00087 * 1 2 3 26 26 H 1.08002 * 128.10317 * 0.02562 * 4 3 2 27 27 H 1.08998 * 109.47003 * 299.99723 * 9 8 6 28 28 H 1.08998 * 109.46735 * 60.00220 * 9 8 6 29 29 H 0.97010 * 120.00346 * 0.02562 * 12 10 9 30 30 H 0.96999 * 120.00231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4503 -0.0005 5 6 3.5390 2.8142 -0.0064 6 6 4.7771 3.6141 -0.0147 7 8 5.8584 3.0599 -0.0175 8 8 4.7099 4.9602 -0.0193 9 6 5.9690 5.6832 -0.0269 10 6 5.6971 7.1655 -0.0305 11 8 4.5546 7.5724 -0.0275 12 7 6.7236 8.0388 -0.0381 13 6 6.4763 9.3873 -0.0420 14 1 5.4589 9.7497 -0.0384 15 6 7.5345 10.2877 -0.0493 16 7 8.7725 9.8467 -0.0530 17 14 7.1975 12.1251 -0.0538 18 1 7.1141 12.6164 1.3451 19 1 8.2980 12.8284 -0.7608 20 1 5.9127 12.3909 -0.7492 21 8 2.2754 3.2803 -0.0035 22 7 1.4685 2.3804 0.0037 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.2442 0.7260 -0.0014 27 1 6.5434 5.4217 0.8618 28 1 6.5363 5.4153 -0.9182 29 1 7.6374 7.7133 -0.0417 30 1 9.5112 10.4752 -0.0585 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324107600.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = -102.653194 kcal Electronic energy + Delta-G solvation = -19458.844422 eV Core-core repulsion = 15837.452693 eV Total energy + Delta-G solvation = -3621.391729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.23382 -41.71887 -40.03901 -39.98901 -37.77680 -36.02527 -34.49460 -33.43278 -33.22795 -30.18142 -28.65506 -26.87620 -25.47799 -24.56288 -22.33454 -21.45514 -20.42116 -20.07181 -19.23504 -18.30071 -18.01028 -17.84057 -17.75015 -17.00872 -16.57535 -16.50173 -15.93518 -15.72529 -15.69870 -14.92543 -14.69228 -14.05084 -13.82123 -13.54283 -13.20083 -12.95712 -12.93283 -12.71056 -12.45597 -12.17462 -12.10350 -11.97935 -11.56410 -11.19325 -10.56267 -10.51091 -10.09779 -8.50853 -6.00961 -0.69863 0.81002 0.81837 1.36701 1.38491 1.43370 1.45304 1.57351 1.89159 1.95003 2.32169 2.83331 3.07546 3.15093 3.47478 3.57514 3.83392 4.02559 4.17748 4.24394 4.24682 4.27197 4.49708 4.63511 4.93408 5.39257 5.75039 5.89875 6.17525 6.50556 6.77661 7.05171 7.41908 7.96015 8.66007 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.055462 B = 0.003087 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.726599 B = 9067.043532 C = 9551.311524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.283 6.283 3 C 0.204 3.796 4 C -0.120 4.120 5 C -0.046 4.046 6 C 0.562 3.438 7 O -0.482 6.482 8 O -0.330 6.330 9 C 0.071 3.929 10 C 0.435 3.565 11 O -0.619 6.619 12 N -0.556 5.556 13 C -0.337 4.337 14 H 0.083 0.917 15 C -0.007 4.007 16 N -0.914 5.914 17 Si 0.996 3.004 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.272 1.272 21 O 0.118 5.882 22 N -0.395 5.395 23 H 0.060 0.940 24 H 0.141 0.859 25 H 0.060 0.940 26 H 0.224 0.776 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.402 0.598 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 -18.868 0.082 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.189 6.189 3 C 0.007 3.993 4 C -0.141 4.141 5 C -0.110 4.110 6 C 0.403 3.597 7 O -0.370 6.370 8 O -0.245 6.245 9 C -0.006 4.006 10 C 0.222 3.778 11 O -0.505 6.505 12 N -0.194 5.194 13 C -0.466 4.466 14 H 0.101 0.899 15 C -0.208 4.208 16 N -0.554 5.554 17 Si 0.819 3.181 18 H -0.195 1.195 19 H -0.194 1.194 20 H -0.197 1.197 21 O 0.051 5.949 22 N -0.119 5.119 23 H 0.079 0.921 24 H 0.159 0.841 25 H 0.079 0.921 26 H 0.241 0.759 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.237 0.763 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.703 -18.548 0.085 20.933 hybrid contribution 0.887 0.504 0.002 1.020 sum -8.816 -18.044 0.087 20.083 Atomic orbital electron populations 1.23431 0.74675 1.06545 1.02562 1.86243 1.24581 1.19055 1.89035 1.22005 0.90823 0.86150 1.00279 1.22503 0.95248 0.93532 1.02807 1.22482 0.85453 0.92672 1.10416 1.19107 0.86199 0.80962 0.73387 1.90936 1.27515 1.72667 1.45879 1.86663 1.36532 1.18444 1.82831 1.22763 0.82848 0.88234 1.06714 1.20113 0.85559 0.87970 0.84202 1.90558 1.22894 1.80395 1.56686 1.41710 1.07993 1.05690 1.64008 1.19698 0.94674 0.81655 1.50585 0.89880 1.26081 0.94178 1.04857 0.95717 1.69660 0.98869 1.37683 1.49188 0.84887 0.78117 0.76349 0.78758 1.19511 1.19436 1.19663 1.85124 1.11751 1.29606 1.68401 1.74065 1.16223 0.97238 1.24375 0.92094 0.84086 0.92102 0.75929 0.86150 0.86142 0.76347 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.73 113.37 1.22 1.48 16 2 O -0.28 -5.10 10.57 -90.55 -0.96 -6.05 16 3 C 0.20 4.45 7.99 85.78 0.69 5.13 16 4 C -0.12 -2.38 10.97 22.81 0.25 -2.12 16 5 C -0.05 -1.18 7.36 24.33 0.18 -1.00 16 6 C 0.56 16.27 7.96 70.24 0.56 16.83 16 7 O -0.48 -14.10 16.70 19.82 0.33 -13.77 16 8 O -0.33 -11.68 9.77 -50.21 -0.49 -12.17 16 9 C 0.07 2.45 5.96 71.24 0.42 2.88 16 10 C 0.43 20.54 7.86 87.66 0.69 21.23 16 11 O -0.62 -34.85 16.08 15.74 0.25 -34.60 16 12 N -0.56 -27.67 5.29 -307.00 -1.62 -29.30 16 13 C -0.34 -18.63 9.68 84.04 0.81 -17.81 16 14 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 15 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 16 N -0.91 -47.64 13.05 21.66 0.28 -47.36 16 17 Si 1.00 41.64 29.55 68.60 2.03 43.67 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 21 O 0.12 3.37 11.22 65.46 0.73 4.11 16 22 N -0.39 -10.25 11.50 -172.00 -1.98 -12.23 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.22 2.98 8.06 -2.91 -0.02 2.96 16 27 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 28 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.40 18.56 7.90 -92.70 -0.73 17.83 16 30 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -68.58 291.18 4.34 -64.24 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.48 Total: 16.77 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 5.28 Total: 26.69 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -3.32 Total: -88.88 kcal Atomic # 8 Polarization: -62.36 SS G_CDS: -0.13 Total: -62.49 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -68.58 4.34 -64.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324107600.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.416 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds