Wall clock time and date at job start Mon Mar 30 2020 01:05:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09003 * 109.47184 * 2 1
4 4 C 1.50696 * 109.46983 * 120.00453 * 2 1 3
5 5 H 1.08009 * 119.99710 * 120.00044 * 4 2 1
6 6 C 1.37874 * 120.00200 * 299.99502 * 4 2 1
7 7 N 1.31516 * 119.99850 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 119.99997 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.47427 * 60.00283 * 8 6 4
10 10 H 1.48499 * 109.47143 * 180.02562 * 8 6 4
11 11 H 1.48507 * 109.47226 * 300.00191 * 8 6 4
12 12 N 1.46505 * 109.46864 * 240.00445 * 2 1 3
13 13 C 1.34772 * 120.00042 * 84.99752 * 12 2 1
14 14 O 1.21626 * 120.00089 * 0.02562 * 13 12 2
15 15 C 1.47282 * 120.00239 * 179.97438 * 13 12 2
16 16 C 1.38012 * 120.87446 * 359.97438 * 15 13 12
17 17 N 1.34312 * 120.39527 * 180.02562 * 16 15 13
18 18 H 0.97002 * 118.80324 * 179.97438 * 17 16 15
19 19 C 1.35647 * 122.39283 * 359.73883 * 17 16 15
20 20 C 1.34937 * 121.77691 * 0.53594 * 19 17 16
21 21 Cl 1.73599 * 120.34122 * 179.75923 * 20 19 17
22 22 C 1.41751 * 119.32040 * 359.47831 * 20 19 17
23 23 O 1.22103 * 121.06784 * 180.27274 * 22 20 19
24 24 H 1.08997 * 109.46922 * 299.99248 * 1 2 3
25 25 H 1.09000 * 109.47358 * 59.99425 * 1 2 3
26 26 H 1.08998 * 109.47200 * 179.97438 * 1 2 3
27 27 H 0.96998 * 119.99606 * 179.97438 * 7 6 4
28 28 H 0.96995 * 120.00034 * 265.00281 * 12 2 1
29 29 H 1.08002 * 119.80271 * 359.97438 * 16 15 13
30 30 H 1.07995 * 119.11164 * 180.29042 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7105 1.2304
5 1 2.6533 -1.5887 1.1312
6 6 1.6994 -0.2395 2.4827
7 7 0.9429 0.8295 2.6034
8 14 2.3226 -1.1198 4.0078
9 1 3.8076 -1.1193 4.0076
10 1 1.8271 -0.4203 5.2203
11 1 1.8281 -2.5202 4.0079
12 7 2.0183 -0.6905 -1.1963
13 6 2.1470 -0.0182 -2.3572
14 8 1.8582 1.1621 -2.4116
15 6 2.6384 -0.7122 -3.5597
16 6 2.9728 -2.0505 -3.5180
17 7 3.4205 -2.6738 -4.6203
18 1 3.6493 -3.6148 -4.5649
19 6 3.5600 -2.0363 -5.8095
20 6 3.2651 -0.7274 -5.9530
21 17 3.4634 0.0527 -7.4911
22 6 2.7861 0.0027 -4.8364
23 8 2.5049 1.1871 -4.9315
24 1 -0.3633 0.5137 0.8900
25 1 -0.3634 0.5139 -0.8899
26 1 -0.3633 -1.0276 -0.0005
27 1 0.7084 1.1606 3.4845
28 1 2.2490 -1.6317 -1.1528
29 1 2.8748 -2.5998 -2.5933
30 1 3.9204 -2.5904 -6.6636
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001324461763.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:05:23
Heat of formation + Delta-G solvation = -43.102689 kcal
Electronic energy + Delta-G solvation = -17973.759552 eV
Core-core repulsion = 14795.659291 eV
Total energy + Delta-G solvation = -3178.100261 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.92927 -38.50982 -37.64534 -36.52409 -34.65619 -32.67781 -31.62667 -31.30689
-28.60894 -25.25380 -24.64821 -23.29633 -21.58809 -19.84488 -19.24526 -17.56367
-17.20473 -16.38455 -15.54977 -15.37496 -15.19402 -15.04859 -14.19227 -13.74766
-13.59372 -13.23099 -13.10478 -12.77137 -12.29821 -12.04350 -11.65195 -11.18399
-11.09272 -10.95869 -10.70976 -10.31940 -10.22130 -9.61976 -9.57643 -9.03664
-8.85753 -8.53459 -8.13949 -7.81775 -6.10893 -4.20970 0.68865 1.13755
1.81615 2.68738 3.24234 3.26172 3.30033 3.31082 3.90325 4.10366
4.15375 4.35027 4.49631 4.75998 4.91345 5.20951 5.33675 5.53418
6.03371 6.35577 6.53301 6.87193 7.01942 7.18985 7.50384 7.58466
7.71078 7.94985 8.07956 8.17632 8.67545 8.80965 9.19552 9.46864
10.95020
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.038732 B = 0.004237 C = 0.003949
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 722.743469 B = 6606.461988 C = 7088.056497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.266 3.734
3 H 0.050 0.950
4 C -0.535 4.535
5 H 0.060 0.940
6 C 0.067 3.933
7 N -0.881 5.881
8 Si 0.902 3.098
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.277 1.277
12 N -0.711 5.711
13 C 0.556 3.444
14 O -0.520 6.520
15 C -0.268 4.268
16 C 0.155 3.845
17 N -0.574 5.574
18 H 0.427 0.573
19 C 0.137 3.863
20 C -0.192 4.192
21 Cl -0.036 7.036
22 C 0.408 3.592
23 O -0.450 6.450
24 H 0.090 0.910
25 H 0.016 0.984
26 H 0.025 0.975
27 H 0.265 0.735
28 H 0.380 0.620
29 H 0.177 0.823
30 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.287 -13.716 -15.550 21.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.165 3.835
3 H 0.068 0.932
4 C -0.573 4.573
5 H 0.078 0.922
6 C -0.137 4.137
7 N -0.518 5.518
8 Si 0.729 3.271
9 H -0.202 1.202
10 H -0.211 1.211
11 H -0.202 1.202
12 N -0.361 5.361
13 C 0.341 3.659
14 O -0.396 6.396
15 C -0.279 4.279
16 C 0.025 3.975
17 N -0.181 5.181
18 H 0.264 0.736
19 C 0.009 3.991
20 C -0.227 4.227
21 Cl -0.008 7.008
22 C 0.290 3.710
23 O -0.327 6.327
24 H 0.108 0.892
25 H 0.035 0.965
26 H 0.044 0.956
27 H 0.075 0.925
28 H 0.213 0.787
29 H 0.194 0.806
30 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges 5.823 -11.928 -15.593 20.477
hybrid contribution 0.594 -1.526 0.743 1.798
sum 6.417 -13.454 -14.850 21.040
Atomic orbital electron populations
1.22080 0.98442 0.99016 1.01046 1.18744 0.91030 0.94122 0.79633
0.93180 1.21147 1.32618 1.13237 0.90346 0.92233 1.24888 0.94828
0.94951 0.99016 1.69899 1.35619 1.22331 1.23998 0.86515 0.79122
0.79497 0.81947 1.20213 1.21122 1.20239 1.46443 1.66234 1.12938
1.10457 1.17407 0.79389 0.86916 0.82208 1.90836 1.49514 1.14981
1.84249 1.22730 1.13196 0.93475 0.98449 1.22391 0.90970 0.93787
0.90374 1.40594 1.56182 1.14218 1.07109 0.73603 1.21434 0.95701
0.93017 0.88927 1.22153 1.15001 0.94171 0.91336 1.98355 1.96068
1.80812 1.25550 1.17987 0.78580 0.88867 0.85536 1.90875 1.41718
1.15186 1.84916 0.89152 0.96486 0.95564 0.92475 0.78726 0.80625
0.81075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16
2 C 0.27 6.82 2.56 -69.08 -0.18 6.65 16
3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16
4 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16
5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16
6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16
7 N -0.88 -24.88 11.32 55.43 0.63 -24.25 16
8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16
9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16
10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
12 N -0.71 -14.63 5.02 -56.05 -0.28 -14.91 16
13 C 0.56 12.04 7.74 -12.59 -0.10 11.94 16
14 O -0.52 -14.15 15.23 -14.77 -0.23 -14.38 16
15 C -0.27 -4.34 6.05 -102.72 -0.62 -4.96 16
16 C 0.15 1.43 10.73 -16.55 -0.18 1.25 16
17 N -0.57 -3.01 5.16 -12.71 -0.07 -3.08 16
18 H 0.43 0.18 8.88 -40.82 -0.36 -0.18 16
19 C 0.14 0.94 10.86 -17.04 -0.19 0.76 16
20 C -0.19 -2.40 6.33 -39.41 -0.25 -2.65 16
21 Cl -0.04 -0.45 28.62 -51.86 -1.48 -1.93 16
22 C 0.41 7.26 6.96 -34.66 -0.24 7.02 16
23 O -0.45 -10.32 15.97 -15.20 -0.24 -10.56 16
24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16
25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
28 H 0.38 6.14 6.61 -40.82 -0.27 5.87 16
29 H 0.18 1.10 6.42 -52.49 -0.34 0.77 16
30 H 0.17 0.45 8.06 -52.49 -0.42 0.02 16
LS Contribution 282.67 15.07 4.26 4.26
Total: -1.00 -38.51 282.67 -6.72 -45.23
By element:
Atomic # 1 Polarization: 2.76 SS G_CDS: -2.49 Total: 0.27 kcal
Atomic # 6 Polarization: 5.91 SS G_CDS: -1.80 Total: 4.11 kcal
Atomic # 7 Polarization: -42.52 SS G_CDS: 0.28 Total: -42.24 kcal
Atomic # 8 Polarization: -24.47 SS G_CDS: -0.47 Total: -24.94 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal
Atomic # 17 Polarization: -0.45 SS G_CDS: -1.48 Total: -1.93 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -38.51 -6.72 -45.23 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001324461763.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.132 kcal
(2) G-P(sol) polarization free energy of solvation -38.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.103 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds