Wall clock time and date at job start Mon Mar 30 2020 01:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47184 * 2 1 4 4 C 1.50696 * 109.46983 * 120.00453 * 2 1 3 5 5 H 1.08009 * 119.99710 * 120.00044 * 4 2 1 6 6 C 1.37874 * 120.00200 * 299.99502 * 4 2 1 7 7 N 1.31516 * 119.99850 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47427 * 60.00283 * 8 6 4 10 10 H 1.48499 * 109.47143 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47226 * 300.00191 * 8 6 4 12 12 N 1.46505 * 109.46864 * 240.00445 * 2 1 3 13 13 C 1.34772 * 120.00042 * 84.99752 * 12 2 1 14 14 O 1.21626 * 120.00089 * 0.02562 * 13 12 2 15 15 C 1.47282 * 120.00239 * 179.97438 * 13 12 2 16 16 C 1.38012 * 120.87446 * 359.97438 * 15 13 12 17 17 N 1.34312 * 120.39527 * 180.02562 * 16 15 13 18 18 H 0.97002 * 118.80324 * 179.97438 * 17 16 15 19 19 C 1.35647 * 122.39283 * 359.73883 * 17 16 15 20 20 C 1.34937 * 121.77691 * 0.53594 * 19 17 16 21 21 Cl 1.73599 * 120.34122 * 179.75923 * 20 19 17 22 22 C 1.41751 * 119.32040 * 359.47831 * 20 19 17 23 23 O 1.22103 * 121.06784 * 180.27274 * 22 20 19 24 24 H 1.08997 * 109.46922 * 299.99248 * 1 2 3 25 25 H 1.09000 * 109.47358 * 59.99425 * 1 2 3 26 26 H 1.08998 * 109.47200 * 179.97438 * 1 2 3 27 27 H 0.96998 * 119.99606 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00034 * 265.00281 * 12 2 1 29 29 H 1.08002 * 119.80271 * 359.97438 * 16 15 13 30 30 H 1.07995 * 119.11164 * 180.29042 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8271 -0.4203 5.2203 11 1 1.8281 -2.5202 4.0079 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8582 1.1621 -2.4116 15 6 2.6384 -0.7122 -3.5597 16 6 2.9728 -2.0505 -3.5180 17 7 3.4205 -2.6738 -4.6203 18 1 3.6493 -3.6148 -4.5649 19 6 3.5600 -2.0363 -5.8095 20 6 3.2651 -0.7274 -5.9530 21 17 3.4634 0.0527 -7.4911 22 6 2.7861 0.0027 -4.8364 23 8 2.5049 1.1871 -4.9315 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7084 1.1606 3.4845 28 1 2.2490 -1.6317 -1.1528 29 1 2.8748 -2.5998 -2.5933 30 1 3.9204 -2.5904 -6.6636 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324461763.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:23 Heat of formation + Delta-G solvation = -73.964874 kcal Electronic energy + Delta-G solvation = -17975.097836 eV Core-core repulsion = 14795.659291 eV Total energy + Delta-G solvation = -3179.438546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.93471 -40.09245 -38.84711 -37.46394 -36.59172 -34.45054 -32.91357 -32.36823 -30.42529 -27.31939 -25.81385 -24.31470 -23.18102 -21.49518 -20.46566 -18.69474 -18.56453 -17.65109 -17.15645 -16.90496 -16.47999 -16.21128 -15.88966 -15.34462 -14.78656 -14.47655 -14.35994 -14.26944 -13.84752 -13.66291 -13.03752 -12.94633 -12.82649 -12.69868 -12.23308 -12.12829 -12.11473 -11.09365 -11.04685 -10.56992 -10.55306 -10.35172 -9.76440 -9.13637 -8.12980 -6.31913 -0.29759 0.26553 0.99229 1.48573 1.51838 1.59508 1.92804 1.93187 2.35941 2.59498 2.75542 3.17688 3.28968 3.76292 3.83039 4.00875 4.35723 4.50852 4.76078 4.91626 4.98417 5.12458 5.44773 5.47703 5.63723 5.70591 5.95275 6.08019 6.11802 6.75971 6.96601 7.03765 7.36649 7.65331 8.93767 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.038732 B = 0.004237 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.743469 B = 6606.461988 C = 7088.056497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.271 3.729 3 H -0.012 1.012 4 C -0.543 4.543 5 H 0.085 0.915 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.292 1.292 11 H -0.257 1.257 12 N -0.698 5.698 13 C 0.552 3.448 14 O -0.596 6.596 15 C -0.335 4.335 16 C 0.228 3.772 17 N -0.533 5.533 18 H 0.463 0.537 19 C 0.192 3.808 20 C -0.232 4.232 21 Cl -0.043 7.043 22 C 0.387 3.613 23 O -0.540 6.540 24 H 0.065 0.935 25 H 0.002 0.998 26 H 0.048 0.952 27 H 0.264 0.736 28 H 0.406 0.594 29 H 0.221 0.779 30 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.282 -19.746 -16.083 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.006 0.994 4 C -0.581 4.581 5 H 0.103 0.897 6 C -0.190 4.190 7 N -0.561 5.561 8 Si 0.802 3.198 9 H -0.194 1.194 10 H -0.218 1.218 11 H -0.182 1.182 12 N -0.350 5.350 13 C 0.341 3.659 14 O -0.477 6.477 15 C -0.346 4.346 16 C 0.093 3.907 17 N -0.141 5.141 18 H 0.308 0.692 19 C 0.063 3.937 20 C -0.265 4.265 21 Cl -0.015 7.015 22 C 0.277 3.723 23 O -0.426 6.426 24 H 0.084 0.916 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.243 0.757 29 H 0.237 0.763 30 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.869 -18.128 -16.169 25.534 hybrid contribution 0.045 0.133 0.826 0.838 sum 7.914 -17.996 -15.343 24.937 Atomic orbital electron populations 1.21903 0.98508 0.99710 0.99095 1.18331 0.91026 0.91813 0.82087 0.99394 1.21517 1.32617 1.13721 0.90208 0.89718 1.25911 0.94870 0.95566 1.02681 1.70092 1.37159 1.24221 1.24614 0.85308 0.78591 0.78782 0.77068 1.19445 1.21845 1.18173 1.46010 1.66109 1.13882 1.08958 1.18192 0.77842 0.86290 0.83589 1.90788 1.52818 1.18554 1.85540 1.22016 1.20161 0.96420 0.96008 1.22718 0.84561 0.90925 0.92538 1.40898 1.51956 1.15680 1.05518 0.69205 1.22175 0.90150 0.90950 0.90418 1.21837 1.18610 0.95950 0.90062 1.98343 1.96275 1.81585 1.25274 1.18735 0.77606 0.88438 0.87562 1.90825 1.46870 1.18516 1.86366 0.91620 0.97914 0.93249 0.92687 0.75737 0.76285 0.74809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 9.26 71.98 0.67 -6.35 16 2 C 0.27 14.42 2.56 44.24 0.11 14.53 16 3 H -0.01 -0.77 7.58 -2.39 -0.02 -0.79 16 4 C -0.54 -27.96 8.73 25.60 0.22 -27.74 16 5 H 0.08 3.84 7.74 -2.91 -0.02 3.81 16 6 C 0.01 0.50 5.30 84.65 0.45 0.95 16 7 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 8 Si 0.98 40.82 29.54 68.60 2.03 42.84 16 9 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 10 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 12 N -0.70 -28.81 5.02 -449.49 -2.26 -31.07 16 13 C 0.55 25.06 7.74 86.62 0.67 25.73 16 14 O -0.60 -35.73 15.23 15.04 0.23 -35.50 16 15 C -0.34 -10.72 6.05 -18.64 -0.11 -10.83 16 16 C 0.23 2.98 10.73 84.26 0.90 3.89 16 17 N -0.53 -1.49 5.16 -194.12 -1.00 -2.49 16 18 H 0.46 -4.21 8.88 -92.71 -0.82 -5.04 16 19 C 0.19 1.44 10.86 83.34 0.91 2.35 16 20 C -0.23 -5.34 6.33 22.38 0.14 -5.20 16 21 Cl -0.04 -1.04 28.62 -2.72 -0.08 -1.11 16 22 C 0.39 14.29 6.96 25.46 0.18 14.47 16 23 O -0.54 -27.40 15.97 13.50 0.22 -27.19 16 24 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.41 11.89 6.61 -92.71 -0.61 11.28 16 29 H 0.22 1.08 6.42 -2.91 -0.02 1.07 16 30 H 0.24 -0.91 8.06 -2.91 -0.02 -0.93 16 Total: -1.00 -101.28 282.67 3.29 -97.99 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: -0.22 Total: -1.68 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.14 Total: 11.80 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -3.02 Total: -87.15 kcal Atomic # 8 Polarization: -63.14 SS G_CDS: 0.44 Total: -62.69 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.11 kcal Total: -101.28 3.29 -97.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324461763.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.023 kcal (2) G-P(sol) polarization free energy of solvation -101.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds