Wall clock time and date at job start Mon Mar 30 2020 01:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46944 * 2 1 4 4 C 1.50695 * 109.47598 * 239.99596 * 2 1 3 5 5 H 1.08001 * 120.00123 * 275.00527 * 4 2 1 6 6 C 1.37873 * 119.99816 * 94.99974 * 4 2 1 7 7 N 1.31520 * 120.00094 * 184.91952 * 6 4 2 8 8 Si 1.86803 * 120.00272 * 4.92156 * 6 4 2 9 9 H 1.48499 * 109.46999 * 84.83198 * 8 6 4 10 10 H 1.48500 * 109.47082 * 204.83340 * 8 6 4 11 11 H 1.48501 * 109.47007 * 324.82771 * 8 6 4 12 12 N 1.46504 * 109.46870 * 119.99259 * 2 1 3 13 13 C 1.34774 * 120.00384 * 275.00179 * 12 2 1 14 14 O 1.21624 * 119.99786 * 0.02562 * 13 12 2 15 15 C 1.47284 * 119.99980 * 180.02562 * 13 12 2 16 16 C 1.38014 * 120.87425 * 359.97367 * 15 13 12 17 17 N 1.34313 * 120.38996 * 180.02562 * 16 15 13 18 18 H 0.97001 * 118.80353 * 179.97438 * 17 16 15 19 19 C 1.35647 * 122.39327 * 359.96261 * 17 16 15 20 20 C 1.34929 * 121.77966 * 0.04197 * 19 17 16 21 21 Cl 1.73601 * 120.34158 * 179.97438 * 20 19 17 22 22 C 1.41756 * 119.32526 * 359.97438 * 20 19 17 23 23 O 1.22092 * 121.06893 * 179.72660 * 22 20 19 24 24 H 1.08998 * 109.46749 * 55.04083 * 1 2 3 25 25 H 1.08994 * 109.46745 * 175.03714 * 1 2 3 26 26 H 1.09000 * 109.47096 * 295.04166 * 1 2 3 27 27 H 0.96998 * 120.00266 * 180.02562 * 7 6 4 28 28 H 0.97004 * 119.99226 * 95.00607 * 12 2 1 29 29 H 1.08001 * 119.80516 * 0.02725 * 16 15 13 30 30 H 1.07997 * 119.11156 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.1356 -1.7855 -1.2289 6 6 2.3604 0.0120 -2.3579 7 7 2.7061 -0.6133 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3948 -1.7821 10 1 2.1060 2.3989 -3.6928 11 1 1.1987 2.3275 -1.4451 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8573 1.1619 2.4118 15 6 2.6384 -0.7122 3.5597 16 6 2.9718 -2.0508 3.5182 17 7 3.4185 -2.6743 4.6208 18 1 3.6458 -3.6157 4.5658 19 6 3.5636 -2.0353 5.8086 20 6 3.2648 -0.7275 5.9531 21 17 3.4640 0.0529 7.4910 22 6 2.7866 0.0029 4.8362 23 8 2.5019 1.1863 4.9323 24 1 -0.3633 0.5888 -0.8422 25 1 -0.3632 -1.0238 -0.0889 26 1 -0.3633 0.4350 0.9311 27 1 2.9372 -0.1050 -4.2553 28 1 2.2490 -1.6317 1.1527 29 1 2.8729 -2.6003 2.5937 30 1 3.9278 -2.5884 6.6617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324461764.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:25 Heat of formation + Delta-G solvation = -43.990867 kcal Electronic energy + Delta-G solvation = -18052.642895 eV Core-core repulsion = 14874.504119 eV Total energy + Delta-G solvation = -3178.138775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.97561 -38.64293 -37.70302 -36.56243 -34.74583 -32.65042 -31.79892 -31.40474 -29.30265 -25.32509 -24.71107 -23.33772 -21.55203 -19.81485 -19.38163 -17.67465 -17.36440 -16.51141 -15.89220 -15.43418 -15.28598 -15.06097 -14.10947 -13.84183 -13.59545 -13.28662 -13.22991 -12.73241 -12.47827 -12.35327 -12.06929 -11.42543 -11.21461 -11.07581 -10.79349 -10.54650 -9.86672 -9.66337 -9.64576 -9.19157 -8.97261 -8.69267 -8.22370 -7.96619 -6.24607 -4.28487 0.64348 1.10127 1.78307 2.65484 3.19077 3.29885 3.37379 3.46855 3.81968 4.05365 4.06570 4.34414 4.46397 4.70416 4.83455 5.15429 5.29994 5.47867 5.96141 6.31723 6.38153 6.50426 6.57159 6.71257 6.99217 7.20605 7.40178 7.57320 8.03104 8.14425 8.56420 8.74989 9.05604 9.38488 10.86808 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.033568 B = 0.004704 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.922964 B = 5950.376182 C = 6367.175731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.232 3.768 3 H 0.051 0.949 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.890 5.890 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.706 5.706 13 C 0.557 3.443 14 O -0.525 6.525 15 C -0.271 4.271 16 C 0.159 3.841 17 N -0.573 5.573 18 H 0.428 0.572 19 C 0.138 3.862 20 C -0.192 4.192 21 Cl -0.036 7.036 22 C 0.409 3.591 23 O -0.451 6.451 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.268 0.732 28 H 0.385 0.615 29 H 0.178 0.822 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -10.316 18.089 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.130 3.870 3 H 0.069 0.931 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.122 4.122 7 N -0.526 5.526 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.183 1.183 12 N -0.357 5.357 13 C 0.342 3.658 14 O -0.401 6.401 15 C -0.282 4.282 16 C 0.029 3.971 17 N -0.180 5.180 18 H 0.265 0.735 19 C 0.010 3.990 20 C -0.226 4.226 21 Cl -0.007 7.007 22 C 0.291 3.709 23 O -0.329 6.329 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.218 0.782 29 H 0.195 0.805 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.823 -8.652 18.080 20.242 hybrid contribution 0.371 -0.129 -0.029 0.394 sum 3.194 -8.781 18.051 20.326 Atomic orbital electron populations 1.22217 0.98555 1.00474 0.99425 1.19127 0.90935 0.94475 0.82438 0.93083 1.20979 1.45380 0.95478 0.94966 0.90409 1.24922 0.93478 0.98686 0.95123 1.69877 1.44773 1.36254 1.01711 0.86909 0.80067 0.85753 0.77342 1.19759 1.21198 1.18325 1.46555 1.66070 1.13284 1.09761 1.17493 0.79139 0.86903 0.82264 1.90822 1.49846 1.15058 1.84394 1.22653 1.13722 0.93515 0.98341 1.22424 0.90513 0.93765 0.90388 1.40613 1.56034 1.14198 1.07163 0.73496 1.21447 0.95576 0.93034 0.88961 1.22146 1.14956 0.94204 0.91341 1.98356 1.96057 1.80793 1.25536 1.17977 0.78542 0.88828 0.85527 1.90867 1.41807 1.15259 1.84939 0.92893 0.93493 0.95059 0.92230 0.78153 0.80472 0.81015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.47 37.16 0.35 -2.92 16 2 C 0.23 5.55 2.22 -69.08 -0.15 5.40 16 3 H 0.05 1.36 4.73 -51.93 -0.25 1.12 16 4 C -0.53 -13.92 9.05 -34.44 -0.31 -14.24 16 5 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 8 Si 0.87 21.81 26.99 -169.99 -4.59 17.22 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.46 6.82 56.52 0.39 -6.07 16 12 N -0.71 -13.96 5.02 -56.05 -0.28 -14.24 16 13 C 0.56 11.58 7.74 -12.58 -0.10 11.48 16 14 O -0.52 -13.66 15.23 -14.77 -0.23 -13.88 16 15 C -0.27 -4.27 6.05 -102.72 -0.62 -4.89 16 16 C 0.16 1.43 10.74 -16.55 -0.18 1.25 16 17 N -0.57 -2.89 5.16 -12.71 -0.07 -2.95 16 18 H 0.43 0.13 8.88 -40.82 -0.36 -0.23 16 19 C 0.14 0.92 10.86 -17.04 -0.19 0.73 16 20 C -0.19 -2.34 6.33 -39.41 -0.25 -2.59 16 21 Cl -0.04 -0.43 28.62 -51.86 -1.48 -1.92 16 22 C 0.41 7.09 6.96 -34.66 -0.24 6.85 16 23 O -0.45 -10.11 15.97 -15.19 -0.24 -10.35 16 24 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.38 6.06 6.67 -40.82 -0.27 5.78 16 29 H 0.18 1.08 6.42 -52.49 -0.34 0.74 16 30 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -39.01 282.42 -6.12 -45.14 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -2.48 Total: -1.50 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.78 Total: 3.26 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.43 Total: -42.23 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.47 Total: -24.23 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.59 Total: 17.22 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -39.01 -6.12 -45.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324461764.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.145 kcal (2) G-P(sol) polarization free energy of solvation -39.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds