Wall clock time and date at job start Mon Mar 30 2020 01:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46944 * 2 1 4 4 C 1.50695 * 109.47598 * 239.99596 * 2 1 3 5 5 H 1.08001 * 120.00123 * 275.00527 * 4 2 1 6 6 C 1.37873 * 119.99816 * 94.99974 * 4 2 1 7 7 N 1.31520 * 120.00094 * 184.91952 * 6 4 2 8 8 Si 1.86803 * 120.00272 * 4.92156 * 6 4 2 9 9 H 1.48499 * 109.46999 * 84.83198 * 8 6 4 10 10 H 1.48500 * 109.47082 * 204.83340 * 8 6 4 11 11 H 1.48501 * 109.47007 * 324.82771 * 8 6 4 12 12 N 1.46504 * 109.46870 * 119.99259 * 2 1 3 13 13 C 1.34774 * 120.00384 * 275.00179 * 12 2 1 14 14 O 1.21624 * 119.99786 * 0.02562 * 13 12 2 15 15 C 1.47284 * 119.99980 * 180.02562 * 13 12 2 16 16 C 1.38014 * 120.87425 * 359.97367 * 15 13 12 17 17 N 1.34313 * 120.38996 * 180.02562 * 16 15 13 18 18 H 0.97001 * 118.80353 * 179.97438 * 17 16 15 19 19 C 1.35647 * 122.39327 * 359.96261 * 17 16 15 20 20 C 1.34929 * 121.77966 * 0.04197 * 19 17 16 21 21 Cl 1.73601 * 120.34158 * 179.97438 * 20 19 17 22 22 C 1.41756 * 119.32526 * 359.97438 * 20 19 17 23 23 O 1.22092 * 121.06893 * 179.72660 * 22 20 19 24 24 H 1.08998 * 109.46749 * 55.04083 * 1 2 3 25 25 H 1.08994 * 109.46745 * 175.03714 * 1 2 3 26 26 H 1.09000 * 109.47096 * 295.04166 * 1 2 3 27 27 H 0.96998 * 120.00266 * 180.02562 * 7 6 4 28 28 H 0.97004 * 119.99226 * 95.00607 * 12 2 1 29 29 H 1.08001 * 119.80516 * 0.02725 * 16 15 13 30 30 H 1.07997 * 119.11156 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.1356 -1.7855 -1.2289 6 6 2.3604 0.0120 -2.3579 7 7 2.7061 -0.6133 -3.4621 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3948 -1.7821 10 1 2.1060 2.3989 -3.6928 11 1 1.1987 2.3275 -1.4451 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8573 1.1619 2.4118 15 6 2.6384 -0.7122 3.5597 16 6 2.9718 -2.0508 3.5182 17 7 3.4185 -2.6743 4.6208 18 1 3.6458 -3.6157 4.5658 19 6 3.5636 -2.0353 5.8086 20 6 3.2648 -0.7275 5.9531 21 17 3.4640 0.0529 7.4910 22 6 2.7866 0.0029 4.8362 23 8 2.5019 1.1863 4.9323 24 1 -0.3633 0.5888 -0.8422 25 1 -0.3632 -1.0238 -0.0889 26 1 -0.3633 0.4350 0.9311 27 1 2.9372 -0.1050 -4.2553 28 1 2.2490 -1.6317 1.1527 29 1 2.8729 -2.6003 2.5937 30 1 3.9278 -2.5884 6.6617 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324461764.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:24 Heat of formation + Delta-G solvation = -75.160430 kcal Electronic energy + Delta-G solvation = -18053.994508 eV Core-core repulsion = 14874.504119 eV Total energy + Delta-G solvation = -3179.490389 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94523 -40.15048 -38.85464 -37.46865 -36.59351 -34.46580 -33.18234 -32.37647 -30.91237 -27.31290 -25.82807 -24.31370 -23.02988 -21.47931 -20.53692 -19.06195 -18.57440 -17.79471 -17.34427 -16.87358 -16.46949 -16.22299 -15.85251 -15.39500 -14.86849 -14.52475 -14.45142 -14.27481 -14.21238 -13.86210 -13.28543 -13.05381 -12.99086 -12.79335 -12.44022 -12.11912 -11.88517 -11.22183 -11.07071 -10.83526 -10.56152 -10.37229 -9.82357 -9.14389 -8.38979 -6.42798 -0.30611 0.26215 0.98794 1.27648 1.33485 1.45438 1.90245 1.92886 2.27424 2.40055 2.73684 3.03824 3.29030 3.75646 3.81915 3.99908 4.31695 4.48459 4.54018 4.73403 4.84196 4.93884 5.16871 5.37626 5.44410 5.47718 5.75968 6.05951 6.16243 6.61542 6.94902 6.96883 7.24294 7.56355 8.75219 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.033568 B = 0.004704 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.922964 B = 5950.376182 C = 6367.175731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.233 3.767 3 H 0.019 0.981 4 C -0.517 4.517 5 H 0.072 0.928 6 C 0.042 3.958 7 N -0.924 5.924 8 Si 0.913 3.087 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.265 1.265 12 N -0.697 5.697 13 C 0.555 3.445 14 O -0.592 6.592 15 C -0.336 4.336 16 C 0.227 3.773 17 N -0.534 5.534 18 H 0.462 0.538 19 C 0.191 3.809 20 C -0.231 4.231 21 Cl -0.043 7.043 22 C 0.389 3.611 23 O -0.539 6.539 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.270 0.730 28 H 0.407 0.593 29 H 0.219 0.781 30 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 -14.466 19.589 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 H 0.037 0.963 4 C -0.556 4.556 5 H 0.090 0.910 6 C -0.159 4.159 7 N -0.563 5.563 8 Si 0.740 3.260 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.190 1.190 12 N -0.349 5.349 13 C 0.344 3.656 14 O -0.474 6.474 15 C -0.347 4.347 16 C 0.092 3.908 17 N -0.141 5.141 18 H 0.307 0.693 19 C 0.062 3.938 20 C -0.264 4.264 21 Cl -0.015 7.015 22 C 0.278 3.722 23 O -0.424 6.424 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.244 0.756 29 H 0.235 0.765 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 3.837 -12.942 19.603 23.802 hybrid contribution 0.138 0.866 -0.396 0.962 sum 3.975 -12.076 19.208 23.034 Atomic orbital electron populations 1.22110 0.97245 1.01614 0.98982 1.18877 0.91935 0.93004 0.83253 0.96253 1.21140 1.43849 0.95220 0.95366 0.90974 1.25410 0.94007 1.01160 0.95287 1.69933 1.46737 1.37275 1.02319 0.86269 0.79330 0.82992 0.77450 1.20574 1.20039 1.18992 1.46128 1.66102 1.14122 1.08546 1.18149 0.77724 0.86289 0.83442 1.90778 1.52841 1.18215 1.85541 1.22007 1.20276 0.96292 0.96109 1.22736 0.84514 0.91106 0.92434 1.40911 1.51954 1.15624 1.05636 0.69273 1.22172 0.90187 0.91049 0.90380 1.21847 1.18526 0.95940 0.90120 1.98345 1.96267 1.81543 1.25329 1.18693 0.77598 0.88410 0.87481 1.90818 1.46795 1.18446 1.86342 0.93629 0.91374 0.95335 0.92022 0.75630 0.76461 0.74922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 9.47 71.98 0.68 -5.53 16 2 C 0.23 11.17 2.22 44.24 0.10 11.27 16 3 H 0.02 1.07 4.73 -2.39 -0.01 1.06 16 4 C -0.52 -26.90 9.05 25.60 0.23 -26.67 16 5 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 6 C 0.04 2.35 5.47 84.65 0.46 2.81 16 7 N -0.92 -53.52 13.96 21.45 0.30 -53.22 16 8 Si 0.91 45.69 26.99 68.60 1.85 47.55 16 9 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -13.43 6.82 99.48 0.68 -12.75 16 12 N -0.70 -26.97 5.02 -449.50 -2.26 -29.23 16 13 C 0.56 23.52 7.74 86.62 0.67 24.20 16 14 O -0.59 -32.87 15.23 15.04 0.23 -32.64 16 15 C -0.34 -10.22 6.05 -18.63 -0.11 -10.33 16 16 C 0.23 2.87 10.74 84.26 0.90 3.78 16 17 N -0.53 -1.43 5.16 -194.13 -1.00 -2.43 16 18 H 0.46 -4.07 8.88 -92.71 -0.82 -4.90 16 19 C 0.19 1.36 10.86 83.34 0.91 2.27 16 20 C -0.23 -5.13 6.33 22.38 0.14 -4.99 16 21 Cl -0.04 -1.00 28.62 -2.72 -0.08 -1.08 16 22 C 0.39 13.76 6.96 25.46 0.18 13.93 16 23 O -0.54 -26.20 15.97 13.53 0.22 -25.98 16 24 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.41 11.60 6.67 -92.70 -0.62 10.98 16 29 H 0.22 1.11 6.42 -2.91 -0.02 1.09 16 30 H 0.23 -0.93 8.06 -2.91 -0.02 -0.96 16 Total: -1.00 -97.14 282.42 3.16 -93.98 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: -0.25 Total: -7.68 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 4.16 Total: 10.74 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.96 Total: -84.88 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: 0.45 Total: -58.62 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.85 Total: 47.55 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -97.14 3.16 -93.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324461764.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.819 kcal (2) G-P(sol) polarization free energy of solvation -97.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds