Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47390 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00056 * 179.97438 * 11 10 9 14 14 C 1.37088 * 120.00231 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99922 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00250 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00178 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99922 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47115 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46483 * 120.00579 * 18 16 14 21 21 H 1.48503 * 109.47140 * 240.00262 * 18 16 14 22 22 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 23 23 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 24 24 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 25 25 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 26 26 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 27 27 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 28 28 H 0.96999 * 119.99619 * 0.02562 * 13 11 10 29 29 H 0.97001 * 120.00587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5152 -5.8455 -0.0007 12 8 4.6312 -5.3704 0.0000 13 7 3.3524 -7.1834 -0.0008 14 6 4.4480 -8.0073 -0.0017 15 1 5.4418 -7.5843 -0.0019 16 6 4.2802 -9.3867 -0.0013 17 7 3.0711 -9.9014 -0.0006 18 14 5.7733 -10.5093 -0.0018 19 1 7.0102 -9.6878 -0.0020 20 1 5.7486 -11.3661 1.2109 21 1 5.7476 -11.3665 -1.2142 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8895 -0.5146 24 1 -0.3633 -0.8904 -0.5131 25 1 3.6973 -3.3319 0.0002 26 1 1.7112 -5.1325 0.8894 27 1 1.7118 -5.1319 -0.8905 28 1 2.4599 -7.5633 -0.0010 29 1 2.9538 -10.8643 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326479517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -4.958350 kcal Electronic energy + Delta-G solvation = -17420.540707 eV Core-core repulsion = 14278.430966 eV Total energy + Delta-G solvation = -3142.109741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11851 -39.63916 -38.21113 -34.69286 -33.87352 -33.43270 -31.48509 -29.41034 -27.37112 -26.99123 -24.66436 -22.45248 -20.44834 -19.69645 -18.64060 -18.28506 -17.57496 -16.29215 -15.97017 -15.42773 -15.30938 -14.81895 -14.39391 -14.15246 -13.95149 -13.61831 -13.22915 -13.16698 -12.58402 -12.35751 -12.12780 -11.71998 -11.68166 -11.20369 -10.49998 -10.46707 -10.39442 -10.15696 -10.01007 -9.89541 -9.73002 -9.09405 -8.75579 -8.19041 -6.59354 -4.01614 -0.43363 0.65667 1.30610 1.76567 2.88426 2.92734 3.04917 3.18574 3.25140 3.63166 3.71091 4.04101 4.38953 4.67070 4.72304 5.08929 5.12034 5.41241 5.53166 5.72298 5.78928 5.90925 5.97338 6.34939 7.36482 7.39114 7.50115 7.82223 8.02185 8.35326 8.96379 9.29499 9.76544 10.57281 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.042080 B = 0.003668 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.244554 B = 7632.658024 C = 8277.456628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.099 3.901 3 N -0.254 5.254 4 N -0.259 5.259 5 S 0.431 5.569 6 C -0.290 4.290 7 C 0.600 3.400 8 O -0.521 6.521 9 N -0.696 5.696 10 C 0.109 3.891 11 C 0.425 3.575 12 O -0.597 6.597 13 N -0.545 5.545 14 C -0.306 4.306 15 H 0.107 0.893 16 C 0.026 3.974 17 N -0.892 5.892 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.410 0.590 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.396 0.604 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 13.795 -0.017 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 N -0.120 5.120 4 N -0.240 5.240 5 S 0.567 5.433 6 C -0.431 4.431 7 C 0.383 3.617 8 O -0.399 6.399 9 N -0.350 5.350 10 C -0.018 4.018 11 C 0.210 3.790 12 O -0.484 6.484 13 N -0.180 5.180 14 C -0.435 4.435 15 H 0.125 0.875 16 C -0.177 4.177 17 N -0.532 5.532 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.121 0.879 25 H 0.249 0.751 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.230 0.770 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.901 14.795 -0.015 14.917 hybrid contribution -0.641 -1.395 0.019 1.535 sum -2.542 13.400 0.004 13.639 Atomic orbital electron populations 1.20528 0.83733 1.04986 1.04373 1.22958 1.00231 0.85000 0.96663 1.70631 0.96993 1.28003 1.16365 1.78815 1.09443 1.16154 1.19584 1.82842 1.09565 1.00767 1.50109 1.27761 0.98226 1.00005 1.17060 1.16359 0.85895 0.81882 0.77583 1.90803 1.15700 1.83060 1.50335 1.45577 1.10517 1.05627 1.73315 1.21065 0.96971 0.79903 1.03875 1.19644 0.89541 0.83652 0.86143 1.90506 1.25413 1.74901 1.57563 1.41789 1.10190 1.03797 1.62215 1.19787 0.88373 0.87040 1.48313 0.87512 1.25347 0.98161 0.97550 0.96626 1.69613 1.21094 1.13518 1.49012 0.85745 0.80855 0.79543 0.77886 1.19083 1.20564 1.20559 0.89331 0.89965 0.87939 0.75113 0.89166 0.89177 0.76970 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.90 36.01 0.36 -0.39 15 2 C 0.10 1.22 7.00 -82.84 -0.58 0.64 15 3 N -0.25 -3.36 11.54 33.42 0.39 -2.98 15 4 N -0.26 -3.35 12.51 60.35 0.75 -2.59 15 5 S 0.43 4.78 23.05 -107.50 -2.48 2.31 15 6 C -0.29 -3.70 6.81 -35.95 -0.24 -3.94 15 7 C 0.60 8.76 7.80 -12.64 -0.10 8.66 15 8 O -0.52 -8.49 14.89 5.25 0.08 -8.41 15 9 N -0.70 -10.66 5.52 -62.65 -0.35 -11.01 15 10 C 0.11 1.82 6.15 -5.19 -0.03 1.78 15 11 C 0.42 9.11 7.85 -10.99 -0.09 9.03 15 12 O -0.60 -14.41 15.24 5.55 0.08 -14.32 15 13 N -0.55 -12.82 5.29 -10.97 -0.06 -12.88 15 14 C -0.31 -7.98 9.68 -14.94 -0.14 -8.12 15 15 H 0.11 2.91 7.16 -52.49 -0.38 2.54 15 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 15 17 N -0.89 -23.02 13.05 55.50 0.72 -22.29 15 18 Si 0.93 19.88 29.55 -169.99 -5.02 14.85 15 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.10 1.09 6.47 -51.93 -0.34 0.76 15 25 H 0.41 6.19 6.86 -40.82 -0.28 5.91 15 26 H 0.09 1.41 8.14 -51.93 -0.42 0.98 15 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.40 8.91 7.90 -40.82 -0.32 8.59 15 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 15 LS Contribution 281.92 15.07 4.25 4.25 Total: -1.00 -29.71 281.92 -4.69 -34.40 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -2.14 Total: 10.44 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.93 Total: 8.23 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 1.46 Total: -51.75 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.16 Total: -22.73 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -2.48 Total: 2.31 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.71 -4.69 -34.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326479517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.445 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds