Wall clock time and date at job start Mon Mar 30 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31234 * 124.05554 * 2 1 4 4 N 1.27344 * 120.03768 * 179.97438 * 3 2 1 5 5 S 1.56637 * 109.73894 * 359.97438 * 4 3 2 6 6 C 1.38246 * 124.05260 * 179.97438 * 2 1 3 7 7 C 1.47168 * 128.48123 * 0.03721 * 6 2 1 8 8 O 1.21628 * 119.99507 * 359.97418 * 7 6 2 9 9 N 1.34769 * 120.00322 * 179.97438 * 7 6 2 10 10 C 1.46505 * 120.00306 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47390 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99955 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00056 * 179.97438 * 11 10 9 14 14 C 1.37088 * 120.00231 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99922 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00250 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00178 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99922 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47115 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46483 * 120.00579 * 18 16 14 21 21 H 1.48503 * 109.47140 * 240.00262 * 18 16 14 22 22 H 1.08994 * 109.47128 * 270.04273 * 1 2 3 23 23 H 1.08997 * 109.46991 * 30.04797 * 1 2 3 24 24 H 1.09001 * 109.46861 * 150.04584 * 1 2 3 25 25 H 0.96998 * 119.99999 * 359.97438 * 9 7 6 26 26 H 1.08997 * 109.46770 * 299.99869 * 10 9 7 27 27 H 1.09002 * 109.47034 * 59.99106 * 10 9 7 28 28 H 0.96999 * 119.99619 * 0.02562 * 13 11 10 29 29 H 0.97001 * 120.00587 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0017 6 6 2.2812 -1.1454 0.0005 7 6 1.8394 -2.5492 0.0004 8 8 0.6521 -2.8131 0.0002 9 7 2.7505 -3.5424 0.0004 10 6 2.3107 -4.9399 -0.0002 11 6 3.5152 -5.8455 -0.0007 12 8 4.6312 -5.3704 0.0000 13 7 3.3524 -7.1834 -0.0008 14 6 4.4480 -8.0073 -0.0017 15 1 5.4418 -7.5843 -0.0019 16 6 4.2802 -9.3867 -0.0013 17 7 3.0711 -9.9014 -0.0006 18 14 5.7733 -10.5093 -0.0018 19 1 7.0102 -9.6878 -0.0020 20 1 5.7486 -11.3661 1.2109 21 1 5.7476 -11.3665 -1.2142 22 1 -0.3633 0.0008 1.0276 23 1 -0.3633 0.8895 -0.5146 24 1 -0.3633 -0.8904 -0.5131 25 1 3.6973 -3.3319 0.0002 26 1 1.7112 -5.1325 0.8894 27 1 1.7118 -5.1319 -0.8905 28 1 2.4599 -7.5633 -0.0010 29 1 2.9538 -10.8643 -0.0007 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326479517.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:47 Heat of formation + Delta-G solvation = -27.884889 kcal Electronic energy + Delta-G solvation = -17421.534876 eV Core-core repulsion = 14278.430966 eV Total energy + Delta-G solvation = -3143.103910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.10416 -40.95249 -39.84863 -36.29881 -35.44885 -34.37712 -33.37081 -30.57826 -28.59651 -28.01231 -26.40851 -23.57404 -21.61455 -21.31657 -20.08586 -19.58810 -18.91252 -17.44951 -17.31858 -16.89708 -16.60653 -16.49031 -15.88919 -15.42845 -15.31098 -15.06893 -14.14608 -13.99761 -13.93670 -13.62270 -13.54937 -13.49254 -12.91208 -12.56405 -12.42957 -12.10537 -11.57009 -11.55725 -11.22783 -11.00189 -10.82315 -10.56545 -10.33911 -10.08070 -8.50338 -5.99912 -1.42066 -0.28527 0.35394 0.78436 1.36053 1.44707 1.57475 1.72795 1.75931 1.91938 2.30260 2.77786 3.08977 3.17408 3.43697 3.57003 4.20466 4.23909 4.42790 4.43938 4.70028 4.79019 5.00897 5.23211 5.40289 5.92542 6.19144 6.48608 6.51552 6.82481 7.05068 7.45105 7.95190 8.66464 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.042080 B = 0.003668 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.244554 B = 7632.658024 C = 8277.456628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.104 3.896 3 N -0.271 5.271 4 N -0.277 5.277 5 S 0.486 5.514 6 C -0.313 4.313 7 C 0.608 3.392 8 O -0.538 6.538 9 N -0.700 5.700 10 C 0.121 3.879 11 C 0.431 3.569 12 O -0.624 6.624 13 N -0.558 5.558 14 C -0.334 4.334 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.915 5.915 18 Si 0.995 3.005 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.094 0.906 25 H 0.412 0.588 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.400 0.600 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 14.152 0.018 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 N -0.136 5.136 4 N -0.257 5.257 5 S 0.622 5.378 6 C -0.453 4.453 7 C 0.392 3.608 8 O -0.417 6.417 9 N -0.354 5.354 10 C -0.006 4.006 11 C 0.218 3.782 12 O -0.512 6.512 13 N -0.193 5.193 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.555 5.555 18 Si 0.818 3.182 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.198 1.198 22 H 0.119 0.881 23 H 0.118 0.882 24 H 0.113 0.887 25 H 0.250 0.750 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.234 0.766 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.004 15.174 0.020 15.306 hybrid contribution -0.589 -1.414 0.009 1.532 sum -2.593 13.759 0.028 14.002 Atomic orbital electron populations 1.20622 0.82234 1.05439 1.05257 1.23322 1.01224 0.84551 0.95335 1.70691 0.97082 1.28447 1.17383 1.78667 1.09683 1.17570 1.19829 1.82657 1.07909 0.99137 1.48104 1.27600 0.99597 0.99175 1.18965 1.16408 0.85409 0.82251 0.76730 1.90796 1.16319 1.83498 1.51046 1.45550 1.10732 1.05195 1.73888 1.20922 0.94625 0.79613 1.05414 1.20392 0.90579 0.83479 0.83726 1.90487 1.27216 1.75419 1.58049 1.41829 1.09778 1.04447 1.63274 1.19756 0.88409 0.88058 1.50161 0.89493 1.26092 1.00783 0.98343 0.95886 1.69671 1.22420 1.14047 1.49327 0.84839 0.77519 0.77601 0.78209 1.19427 1.19795 1.19782 0.88118 0.88175 0.88732 0.74985 0.87577 0.87583 0.76557 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.90 71.24 0.71 -0.65 15 2 C 0.10 2.40 7.00 42.65 0.30 2.69 15 3 N -0.27 -6.78 11.54 -48.18 -0.56 -7.34 15 4 N -0.28 -6.74 12.51 37.02 0.46 -6.28 15 5 S 0.49 10.02 23.05 -56.49 -1.30 8.72 15 6 C -0.31 -7.53 6.81 24.62 0.17 -7.36 15 7 C 0.61 16.85 7.80 86.59 0.68 17.53 15 8 O -0.54 -16.69 14.89 -4.12 -0.06 -16.75 15 9 N -0.70 -20.45 5.52 -470.36 -2.60 -23.05 15 10 C 0.12 3.88 6.15 85.63 0.53 4.40 15 11 C 0.43 18.33 7.85 87.66 0.69 19.02 15 12 O -0.62 -30.05 15.24 -3.06 -0.05 -30.10 15 13 N -0.56 -26.29 5.29 -306.99 -1.62 -27.91 15 14 C -0.33 -17.62 9.68 84.04 0.81 -16.81 15 15 H 0.09 4.84 7.16 -2.91 -0.02 4.82 15 16 C -0.01 -0.51 5.50 84.93 0.47 -0.05 15 17 N -0.91 -46.85 13.05 21.66 0.28 -46.57 15 18 Si 0.99 40.43 29.55 68.60 2.03 42.46 15 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 21 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 22 H 0.10 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.10 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.09 1.88 6.47 -2.39 -0.02 1.87 15 25 H 0.41 11.94 6.86 -92.71 -0.64 11.30 15 26 H 0.11 3.12 8.14 -2.39 -0.02 3.10 15 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 15 28 H 0.40 18.00 7.90 -92.71 -0.73 17.26 15 29 H 0.28 13.40 8.31 -92.71 -0.77 12.63 15 Total: -1.00 -62.09 281.92 0.80 -61.29 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.13 Total: 26.74 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 4.34 Total: 18.79 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.03 Total: -111.15 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.11 Total: -46.85 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 10.02 SS G_CDS: -1.30 Total: 8.72 kcal Total: -62.09 0.80 -61.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326479517.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.408 kcal (2) G-P(sol) polarization free energy of solvation -62.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds