Wall clock time and date at job start Mon Mar 30 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 116.99990 * 2 1 4 4 C 1.38711 * 120.05939 * 359.97438 * 3 2 1 5 5 C 1.38149 * 119.95272 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.08103 * 359.72595 * 5 4 3 7 7 C 1.38251 * 120.11331 * 0.54755 * 6 5 4 8 8 C 1.50708 * 119.97484 * 179.72556 * 7 6 5 9 9 C 1.50693 * 109.46934 * 264.72469 * 8 7 6 10 10 O 1.21213 * 120.00493 * 0.02562 * 9 8 7 11 11 O 1.34310 * 119.99805 * 179.72720 * 9 8 7 12 12 C 1.34922 * 117.00349 * 180.27868 * 11 9 8 13 13 H 1.08003 * 119.99659 * 359.97438 * 12 11 9 14 14 C 1.38755 * 120.00272 * 179.97438 * 12 11 9 15 15 N 1.31441 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99825 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47085 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46977 * 120.00291 * 16 14 12 19 19 H 1.48500 * 109.47251 * 240.00132 * 16 14 12 20 20 C 1.38254 * 120.04365 * 359.45208 * 7 6 5 21 21 Cl 1.73599 * 120.03543 * 180.25275 * 20 7 6 22 22 H 1.09004 * 109.46922 * 300.00108 * 1 2 3 23 23 H 1.08997 * 109.47326 * 59.99025 * 1 2 3 24 24 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.02120 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.96370 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.94331 * 180.27467 * 6 5 4 28 28 H 1.09004 * 109.46656 * 144.72363 * 8 7 6 29 29 H 1.08994 * 109.46994 * 24.72806 * 8 7 6 30 30 H 0.96993 * 120.00374 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 -0.0005 5 6 1.9213 3.6050 -0.0011 6 6 3.3022 3.6767 0.0047 7 6 4.0570 2.5184 -0.0005 8 6 5.5619 2.6003 -0.0005 9 6 6.0702 2.5033 -1.4158 10 8 5.2881 2.3803 -2.3336 11 8 7.3896 2.5590 -1.6608 12 6 7.7775 2.4721 -2.9501 13 1 7.0385 2.3625 -3.7301 14 6 9.1257 2.5234 -3.2740 15 7 10.0251 2.6562 -2.3247 16 14 9.6627 2.4022 -5.0590 17 1 8.4665 2.2586 -5.9271 18 1 10.4036 3.6322 -5.4376 19 1 10.5449 1.2202 -5.2315 20 6 3.4322 1.2851 0.0000 21 17 4.3802 -0.1692 0.0002 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.2133 2.3202 -0.0014 26 1 1.3342 4.5115 -0.0019 27 1 3.7920 4.6392 0.0087 28 1 5.9703 1.7797 0.5894 29 1 5.8740 3.5502 0.4334 30 1 10.9676 2.6916 -2.5510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328022187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:06 Heat of formation + Delta-G solvation = -98.076954 kcal Electronic energy + Delta-G solvation = -17965.838286 eV Core-core repulsion = 14753.061411 eV Total energy + Delta-G solvation = -3212.776875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23869 -38.94733 -37.58044 -36.07676 -35.09422 -32.36434 -32.03372 -30.35020 -27.93416 -27.17294 -25.06402 -22.56475 -21.82605 -19.90536 -17.79645 -17.63470 -16.53788 -16.50941 -16.23914 -15.82874 -14.78183 -14.53009 -14.39554 -14.13838 -13.82473 -13.51980 -13.05182 -12.27329 -12.12192 -11.92796 -11.71519 -11.54459 -11.36805 -11.13441 -11.06752 -11.03552 -10.44244 -10.35545 -10.27808 -9.73702 -9.01892 -8.58521 -8.52105 -8.10905 -6.35091 -4.02431 1.21527 1.39493 2.45591 3.13939 3.15008 3.23072 3.30724 3.60498 3.63020 4.05486 4.62817 4.75588 4.83829 4.98798 5.00860 5.13872 5.18196 5.27100 5.33531 5.36743 5.64578 5.83675 6.01038 6.10385 6.34709 6.53107 6.61550 6.87438 7.25333 7.46408 8.02064 8.78793 9.14108 9.92485 10.83247 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.004828 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.458561 B = 5797.590967 C = 6032.931779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.133 3.867 4 C -0.204 4.204 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.009 4.009 8 C -0.075 4.075 9 C 0.406 3.594 10 O -0.545 6.545 11 O -0.216 6.216 12 C -0.378 4.378 13 H 0.095 0.905 14 C 0.041 3.959 15 N -0.867 5.867 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.276 1.276 20 C -0.051 4.051 21 Cl -0.051 7.051 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.521 -0.790 7.623 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.087 3.913 4 C -0.223 4.223 5 C -0.096 4.096 6 C -0.150 4.150 7 C -0.010 4.010 8 C -0.113 4.113 9 C 0.251 3.749 10 O -0.442 6.442 11 O -0.123 6.123 12 C -0.455 4.455 13 H 0.113 0.887 14 C -0.162 4.162 15 N -0.504 5.504 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.078 4.078 21 Cl -0.022 7.022 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.150 0.850 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.308 -1.144 7.395 17.943 hybrid contribution 0.114 -0.046 -0.886 0.894 sum -16.194 -1.189 6.509 17.494 Atomic orbital electron populations 1.23063 0.78464 1.03947 1.01271 1.86159 1.21193 1.26068 1.88548 1.18570 0.90312 0.85053 0.97373 1.21094 0.99824 0.91790 1.09615 1.20921 0.94394 0.97046 0.97203 1.20923 0.93614 0.97677 1.02812 1.19139 0.95083 0.90853 0.95910 1.20159 0.90163 1.05938 0.95063 1.22721 0.82962 0.78897 0.90275 1.90582 1.57315 1.49825 1.46441 1.83868 1.21694 1.75505 1.31233 1.21262 0.92200 1.51402 0.80620 0.88688 1.25308 0.94526 0.96381 1.00018 1.69999 1.01381 1.46692 1.32374 0.85643 0.78942 0.78080 0.80775 1.18989 1.20227 1.20210 1.19993 0.88671 0.88687 1.10480 1.98365 1.71560 1.35418 1.96841 0.92691 0.92585 0.88208 0.84954 0.85251 0.84885 0.87467 0.87443 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.28 9.96 -19.50 -0.19 -4.47 16 3 C 0.13 2.03 6.68 -39.19 -0.26 1.76 16 4 C -0.20 -2.55 9.04 -39.44 -0.36 -2.91 16 5 C -0.08 -0.96 10.04 -39.60 -0.40 -1.35 16 6 C -0.13 -1.93 9.68 -39.56 -0.38 -2.31 16 7 C -0.01 -0.15 4.37 -104.61 -0.46 -0.61 16 8 C -0.08 -1.42 5.45 -29.03 -0.16 -1.58 16 9 C 0.41 10.20 7.90 36.00 0.28 10.48 16 10 O -0.55 -14.96 15.27 -19.05 -0.29 -15.25 16 11 O -0.22 -6.28 9.75 -20.71 -0.20 -6.48 16 12 C -0.38 -11.42 9.65 30.92 0.30 -11.13 16 13 H 0.10 2.90 6.86 -52.48 -0.36 2.54 16 14 C 0.04 1.18 5.49 -17.53 -0.10 1.09 16 15 N -0.87 -25.79 13.67 55.48 0.76 -25.03 16 16 Si 0.94 21.76 29.55 -169.99 -5.02 16.74 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.05 -0.90 6.33 -39.36 -0.25 -1.14 16 21 Cl -0.05 -0.93 26.95 -51.86 -1.40 -2.33 16 22 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 23 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 24 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 26 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 27 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.11 1.92 7.12 -51.93 -0.37 1.55 16 29 H 0.11 1.72 8.05 -51.93 -0.42 1.30 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 287.11 15.07 4.33 4.33 Total: -1.00 -35.21 287.11 -5.49 -40.70 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -2.68 Total: -1.72 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.79 Total: -6.48 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.76 Total: -25.03 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.69 Total: -26.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.40 Total: -2.33 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.21 -5.49 -40.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328022187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.381 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds