Wall clock time and date at job start Mon Mar 30 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35925 * 116.99990 * 2 1 4 4 C 1.38711 * 120.05939 * 359.97438 * 3 2 1 5 5 C 1.38149 * 119.95272 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.08103 * 359.72595 * 5 4 3 7 7 C 1.38251 * 120.11331 * 0.54755 * 6 5 4 8 8 C 1.50708 * 119.97484 * 179.72556 * 7 6 5 9 9 C 1.50693 * 109.46934 * 264.72469 * 8 7 6 10 10 O 1.21213 * 120.00493 * 0.02562 * 9 8 7 11 11 O 1.34310 * 119.99805 * 179.72720 * 9 8 7 12 12 C 1.34922 * 117.00349 * 180.27868 * 11 9 8 13 13 H 1.08003 * 119.99659 * 359.97438 * 12 11 9 14 14 C 1.38755 * 120.00272 * 179.97438 * 12 11 9 15 15 N 1.31441 * 120.00098 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99825 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47085 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46977 * 120.00291 * 16 14 12 19 19 H 1.48500 * 109.47251 * 240.00132 * 16 14 12 20 20 C 1.38254 * 120.04365 * 359.45208 * 7 6 5 21 21 Cl 1.73599 * 120.03543 * 180.25275 * 20 7 6 22 22 H 1.09004 * 109.46922 * 300.00108 * 1 2 3 23 23 H 1.08997 * 109.47326 * 59.99025 * 1 2 3 24 24 H 1.08993 * 109.47340 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.02120 * 359.97438 * 4 3 2 26 26 H 1.08003 * 119.96370 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.94331 * 180.27467 * 6 5 4 28 28 H 1.09004 * 109.46656 * 144.72363 * 8 7 6 29 29 H 1.08994 * 109.46994 * 24.72806 * 8 7 6 30 30 H 0.96993 * 120.00374 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2918 2.3752 -0.0005 5 6 1.9213 3.6050 -0.0011 6 6 3.3022 3.6767 0.0047 7 6 4.0570 2.5184 -0.0005 8 6 5.5619 2.6003 -0.0005 9 6 6.0702 2.5033 -1.4158 10 8 5.2881 2.3803 -2.3336 11 8 7.3896 2.5590 -1.6608 12 6 7.7775 2.4721 -2.9501 13 1 7.0385 2.3625 -3.7301 14 6 9.1257 2.5234 -3.2740 15 7 10.0251 2.6562 -2.3247 16 14 9.6627 2.4022 -5.0590 17 1 8.4665 2.2586 -5.9271 18 1 10.4036 3.6322 -5.4376 19 1 10.5449 1.2202 -5.2315 20 6 3.4322 1.2851 0.0000 21 17 4.3802 -0.1692 0.0002 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 0.2133 2.3202 -0.0014 26 1 1.3342 4.5115 -0.0019 27 1 3.7920 4.6392 0.0087 28 1 5.9703 1.7797 0.5894 29 1 5.8740 3.5502 0.4334 30 1 10.9676 2.6916 -2.5510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328022187.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:06 Heat of formation + Delta-G solvation = -120.746238 kcal Electronic energy + Delta-G solvation = -17966.821300 eV Core-core repulsion = 14753.061411 eV Total energy + Delta-G solvation = -3213.759889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43703 -40.78368 -38.77005 -37.37181 -37.13196 -34.29896 -33.64529 -31.39616 -29.28974 -28.09500 -27.10967 -23.68258 -23.20264 -21.54609 -19.85532 -18.87046 -18.49942 -17.66392 -17.35006 -16.79127 -16.52540 -16.47812 -16.22130 -15.34631 -14.92978 -14.72345 -14.48197 -13.90521 -13.57053 -13.51330 -13.02176 -12.94254 -12.79018 -12.53753 -12.29894 -12.17872 -12.10649 -12.01638 -11.96536 -11.68733 -11.04645 -10.68297 -9.79432 -9.20030 -8.52452 -6.31855 0.07018 0.29706 1.20218 1.30830 1.34143 1.52502 1.66787 2.10826 2.24722 2.50465 2.98353 3.01161 3.51797 3.86525 4.02186 4.10742 4.25014 4.37414 4.41718 4.44744 4.61867 4.63272 4.74450 4.88110 5.06810 5.19788 5.27952 5.41733 5.65162 5.85380 6.31091 6.69452 6.92952 7.79393 8.68694 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.030814 B = 0.004828 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.458561 B = 5797.590967 C = 6032.931779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.124 3.876 4 C -0.194 4.194 5 C -0.067 4.067 6 C -0.141 4.141 7 C -0.037 4.037 8 C -0.065 4.065 9 C 0.407 3.593 10 O -0.571 6.571 11 O -0.246 6.246 12 C -0.417 4.417 13 H 0.079 0.921 14 C -0.004 4.004 15 N -0.904 5.904 16 Si 1.015 2.985 17 H -0.266 1.266 18 H -0.257 1.257 19 H -0.261 1.261 20 C -0.082 4.082 21 Cl -0.076 7.076 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.117 0.883 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.387 0.230 7.410 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.077 3.923 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.038 4.038 8 C -0.103 4.103 9 C 0.254 3.746 10 O -0.468 6.468 11 O -0.155 6.155 12 C -0.493 4.493 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.541 5.541 16 Si 0.834 3.166 17 H -0.190 1.190 18 H -0.182 1.182 19 H -0.186 1.186 20 C -0.109 4.109 21 Cl -0.047 7.047 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.135 0.865 25 H 0.189 0.811 26 H 0.190 0.810 27 H 0.167 0.833 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.196 -0.124 7.210 19.573 hybrid contribution 0.488 -0.362 -0.742 0.959 sum -17.708 -0.486 6.468 18.859 Atomic orbital electron populations 1.23436 0.75766 1.05804 1.02771 1.86138 1.24022 1.25864 1.88359 1.18781 0.89766 0.86531 0.97189 1.21584 1.01637 0.90715 1.07270 1.21424 0.93631 0.98679 0.94707 1.21247 0.94909 0.97309 1.02484 1.19151 0.94008 0.92037 0.98577 1.20211 0.91816 1.07526 0.90710 1.23932 0.81573 0.76455 0.92632 1.90539 1.57570 1.50501 1.48177 1.83891 1.23932 1.76761 1.30912 1.21415 0.92916 1.54013 0.80984 0.90305 1.26497 0.93773 0.94864 1.05270 1.70078 1.02162 1.46914 1.34977 0.84602 0.78541 0.79271 0.74148 1.19049 1.18157 1.18562 1.20293 0.89873 0.87911 1.12838 1.98340 1.72378 1.36898 1.97108 0.90571 0.91480 0.86451 0.81092 0.81040 0.83306 0.87099 0.84648 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.80 9.96 -92.70 -0.92 -9.73 16 3 C 0.12 3.60 6.68 22.52 0.15 3.75 16 4 C -0.19 -4.16 9.04 22.36 0.20 -3.96 16 5 C -0.07 -1.39 10.04 22.26 0.22 -1.17 16 6 C -0.14 -3.85 9.68 22.28 0.22 -3.63 16 7 C -0.04 -1.27 4.37 -19.86 -0.09 -1.36 16 8 C -0.07 -2.50 5.45 29.10 0.16 -2.34 16 9 C 0.41 21.12 7.90 71.23 0.56 21.68 16 10 O -0.57 -32.34 15.27 20.77 0.32 -32.02 16 11 O -0.25 -14.93 9.75 14.85 0.14 -14.79 16 12 C -0.42 -26.09 9.65 67.94 0.66 -25.43 16 13 H 0.08 5.03 6.86 -2.91 -0.02 5.01 16 14 C 0.00 -0.24 5.49 84.87 0.47 0.22 16 15 N -0.90 -54.47 13.67 21.62 0.30 -54.17 16 16 Si 1.02 44.66 29.55 68.60 2.03 46.68 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 C -0.08 -2.89 6.33 22.41 0.14 -2.75 16 21 Cl -0.08 -2.88 26.95 -2.72 -0.07 -2.95 16 22 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 23 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 24 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.17 2.26 6.30 -2.91 -0.02 2.25 16 26 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 28 H 0.11 4.12 7.12 -2.38 -0.02 4.10 16 29 H 0.14 4.30 8.05 -2.39 -0.02 4.28 16 30 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -79.73 287.11 6.76 -72.97 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.17 Total: 7.64 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.80 Total: -13.63 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.30 Total: -54.17 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.46 Total: -56.53 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.07 Total: -2.95 kcal Total: -79.73 6.76 -72.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328022187.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.781 kcal (2) G-P(sol) polarization free energy of solvation -79.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds