Wall clock time and date at job start Mon Mar 30 2020 00:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48508 * 109.46617 * 270.00068 * 3 2 1 5 5 H 1.48494 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48497 * 109.47243 * 150.00753 * 3 2 1 7 7 C 1.37875 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00496 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99849 * 359.97438 * 7 2 1 10 10 O 1.42902 * 113.28425 * 46.92997 * 9 7 2 11 11 C 1.53500 * 114.20812 * 180.02562 * 9 7 2 12 12 N 1.47062 * 87.98721 * 139.84892 * 11 9 7 13 13 C 1.34777 * 136.05651 * 152.83902 * 12 11 9 14 14 O 1.21593 * 119.99953 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00097 * 180.27578 * 13 12 11 16 16 C 1.39541 * 120.00385 * 179.72696 * 15 13 12 17 17 C 1.35879 * 127.79131 * 180.02562 * 16 15 13 18 18 N 1.31222 * 115.50292 * 179.97438 * 17 16 15 19 19 N 1.28157 * 118.79282 * 0.02562 * 18 17 16 20 20 S 1.69868 * 106.60105 * 359.72769 * 19 18 17 21 21 C 1.47067 * 87.88602 * 333.10138 * 12 11 9 22 22 H 0.97000 * 120.00426 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99533 * 313.07067 * 10 9 7 24 24 H 1.09005 * 113.46346 * 25.06691 * 11 9 7 25 25 H 1.08999 * 113.46355 * 254.63238 * 11 9 7 26 26 H 0.97000 * 120.00112 * 359.73180 * 15 13 12 27 27 H 1.07999 * 122.24636 * 0.02720 * 17 16 15 28 28 H 1.08994 * 113.46791 * 141.67725 * 21 12 11 29 29 H 1.08998 * 113.46769 * 272.11820 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 8 0.1920 -2.5408 -0.9568 11 6 2.1489 -3.7442 0.0028 12 7 1.2075 -4.3585 0.9510 13 6 0.8313 -5.6127 1.2700 14 8 1.3283 -6.5615 0.6944 15 7 -0.0995 -5.8152 2.2235 16 6 -0.4932 -7.1135 2.5498 17 6 -1.4099 -7.4976 3.4764 18 7 -1.5947 -8.7921 3.5855 19 7 -0.9173 -9.5779 2.8331 20 16 0.0682 -8.5913 1.8632 21 6 0.8524 -3.0016 1.3934 22 1 -0.4851 0.8400 0.0004 23 1 -0.3716 -1.7550 -0.9545 24 1 3.1374 -3.5661 0.4263 25 1 2.1878 -4.2520 -0.9608 26 1 -0.4958 -5.0584 2.6829 27 1 -1.9506 -6.7852 4.0817 28 1 -0.2088 -2.8794 1.6098 29 1 1.4920 -2.6238 2.1910 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328726899.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:29 Heat of formation + Delta-G solvation = 36.873642 kcal Electronic energy + Delta-G solvation = -18067.647871 eV Core-core repulsion = 14927.352101 eV Total energy + Delta-G solvation = -3140.295770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59936 -39.87614 -38.32558 -35.18350 -34.29278 -32.36381 -30.82122 -28.78093 -26.27391 -25.44115 -25.13447 -21.57605 -21.34003 -19.62966 -18.32023 -18.00570 -17.43987 -16.88441 -15.87548 -15.56620 -15.25922 -14.86735 -14.47228 -14.27462 -13.66447 -13.07791 -12.95738 -12.34472 -12.31200 -11.73311 -11.68920 -11.61200 -11.24661 -11.20662 -10.66910 -10.62859 -10.45617 -9.72977 -9.50631 -9.47843 -8.96757 -8.82990 -8.59390 -8.11359 -6.57301 -4.68325 0.26219 0.92945 1.73091 2.29516 2.44398 3.04700 3.13712 3.15262 3.20532 3.85780 4.05727 4.43250 4.63692 4.66533 5.29379 5.45332 5.58446 5.80153 5.97694 6.05051 6.14786 6.25405 6.39753 6.80149 6.97530 7.46530 7.60266 7.83739 8.10120 8.35934 8.41746 9.03911 9.29597 10.49677 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050725 B = 0.004119 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.861974 B = 6796.694349 C = 7032.211014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.075 0.925 9 C 0.243 3.757 10 O -0.571 6.571 11 C 0.129 3.871 12 N -0.641 5.641 13 C 0.718 3.282 14 O -0.570 6.570 15 N -0.626 5.626 16 C 0.077 3.923 17 C -0.096 4.096 18 N -0.202 5.202 19 N -0.266 5.266 20 S 0.343 5.657 21 C 0.066 3.934 22 H 0.276 0.724 23 H 0.395 0.605 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.421 0.579 27 H 0.190 0.810 28 H 0.065 0.935 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -5.106 5.237 7.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.573 4.573 8 H 0.093 0.907 9 C 0.201 3.799 10 O -0.384 6.384 11 C 0.007 3.993 12 N -0.376 5.376 13 C 0.421 3.579 14 O -0.447 6.447 15 N -0.274 5.274 16 C -0.161 4.161 17 C -0.265 4.265 18 N -0.069 5.069 19 N -0.249 5.249 20 S 0.474 5.526 21 C -0.056 4.056 22 H 0.086 0.914 23 H 0.252 0.748 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.259 0.741 27 H 0.207 0.793 28 H 0.084 0.916 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.196 -8.136 4.273 9.192 hybrid contribution -0.540 3.463 1.061 3.662 sum -0.344 -4.673 5.335 7.100 Atomic orbital electron populations 1.69240 1.06254 1.28486 1.49787 1.25089 0.95057 1.00100 0.92761 0.86270 0.79711 0.81602 0.78632 1.20111 1.20848 1.19464 1.21381 0.94005 0.89431 1.52521 0.90690 1.19459 0.85492 0.91048 0.83891 1.86058 1.45065 1.48484 1.58801 1.23396 0.93275 0.91132 0.91472 1.48823 1.44073 1.02591 1.42127 1.15278 0.79712 0.83174 0.79755 1.90896 1.58887 1.39685 1.55259 1.41917 1.41725 1.04220 1.39556 1.23883 0.99460 0.93176 0.99591 1.23077 1.04854 0.93368 1.05173 1.70899 1.17369 1.01763 1.16889 1.82208 1.11968 1.19989 1.10707 1.85677 1.39720 0.89907 1.37263 1.24362 1.00620 0.77073 1.03577 0.91389 0.74762 0.89118 0.90929 0.74083 0.79337 0.91616 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.02 11.01 55.43 0.61 -20.41 15 2 C 0.07 1.67 5.39 -17.82 -0.10 1.58 15 3 Si 0.91 18.09 29.54 -169.99 -5.02 13.07 15 4 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 7 C -0.54 -12.19 8.70 -34.44 -0.30 -12.49 15 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 15 9 C 0.24 5.23 1.57 -91.39 -0.14 5.09 15 10 O -0.57 -13.51 13.53 -35.23 -0.48 -13.99 15 11 C 0.13 2.49 8.04 -8.51 -0.07 2.42 15 12 N -0.64 -11.81 3.69 -191.17 -0.71 -12.51 15 13 C 0.72 12.95 8.76 -86.92 -0.76 12.19 15 14 O -0.57 -11.54 14.93 5.28 0.08 -11.46 15 15 N -0.63 -8.99 5.43 -15.63 -0.08 -9.07 15 16 C 0.08 1.10 7.34 -14.88 -0.11 0.99 15 17 C -0.10 -1.22 11.37 -18.66 -0.21 -1.43 15 18 N -0.20 -3.01 11.65 29.66 0.35 -2.66 15 19 N -0.27 -4.15 13.33 60.35 0.80 -3.35 15 20 S 0.34 5.20 21.29 -107.50 -2.29 2.91 15 21 C 0.07 1.22 7.69 -8.64 -0.07 1.15 15 22 H 0.28 6.17 8.31 -40.82 -0.34 5.83 15 23 H 0.40 9.53 6.32 45.56 0.29 9.82 15 24 H 0.09 1.57 8.10 -51.93 -0.42 1.15 15 25 H 0.07 1.44 8.14 -51.93 -0.42 1.01 15 26 H 0.42 4.89 8.54 -40.82 -0.35 4.55 15 27 H 0.19 1.73 8.06 -52.49 -0.42 1.31 15 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 29 H 0.09 1.50 8.10 -51.93 -0.42 1.08 15 LS Contribution 276.11 15.07 4.16 4.16 Total: -1.00 -26.33 276.11 -6.05 -32.38 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -1.71 Total: 11.46 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.76 Total: 9.49 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.97 Total: -48.01 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.40 Total: -25.45 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.07 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -2.29 Total: 2.91 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.33 -6.05 -32.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328726899.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.250 kcal (2) G-P(sol) polarization free energy of solvation -26.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds