Wall clock time and date at job start Mon Mar 30 2020 00:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 119.99972 * 2 1 4 4 H 1.48498 * 109.47272 * 239.99968 * 3 2 1 5 5 H 1.48501 * 109.46704 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46811 * 119.99880 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99834 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47151 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.34777 * 119.99659 * 180.27982 * 14 13 11 16 16 O 1.21603 * 120.00257 * 359.71857 * 15 14 13 17 17 C 1.47425 * 119.99743 * 179.72167 * 15 14 13 18 18 C 1.41291 * 126.41775 * 359.68942 * 17 15 14 19 19 N 1.30443 * 108.02710 * 179.81652 * 18 17 15 20 20 N 1.39928 * 108.89523 * 0.44405 * 19 18 17 21 21 H 0.97006 * 125.75471 * 179.69218 * 20 19 18 22 22 C 1.34258 * 108.49243 * 359.71006 * 20 19 18 23 23 H 0.96999 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46967 * 59.99619 * 10 9 7 25 25 H 1.09007 * 109.46677 * 300.00127 * 10 9 7 26 26 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 27 27 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 28 28 H 1.08009 * 125.98683 * 359.95817 * 18 17 15 29 29 H 1.07999 * 126.29301 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 7 2.3529 -7.6552 -0.0029 15 6 3.2097 -8.6955 0.0021 16 8 4.4092 -8.4954 0.0025 17 6 2.6928 -10.0761 0.0071 18 6 1.3338 -10.4629 0.0134 19 7 1.2852 -11.7665 0.0124 20 7 2.5912 -12.2687 0.0158 21 1 2.8377 -13.2069 0.0201 22 6 3.4457 -11.2331 0.0125 23 1 -0.4850 0.8401 0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1245 -3.7313 -0.8906 26 1 3.8010 -6.1835 -0.0015 27 1 1.3961 -7.8147 -0.0029 28 1 0.4842 -9.7961 0.0161 29 1 4.5239 -11.2941 0.0134 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329529223.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:51 Heat of formation + Delta-G solvation = 35.816774 kcal Electronic energy + Delta-G solvation = -16925.794637 eV Core-core repulsion = 13785.453038 eV Total energy + Delta-G solvation = -3140.341599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76186 -39.96734 -38.51076 -35.18614 -32.62482 -32.45629 -31.61056 -30.51195 -28.46323 -25.51603 -23.57297 -22.41148 -21.34519 -20.37737 -19.09509 -17.76201 -17.74301 -16.67461 -15.74070 -15.60324 -15.12591 -15.01258 -14.82515 -14.62896 -14.30891 -14.11121 -13.40369 -13.26974 -12.65047 -12.33739 -11.62286 -11.15367 -11.08139 -11.04273 -10.81134 -10.32682 -10.31517 -9.87783 -9.72947 -9.32764 -9.08322 -8.31293 -8.26686 -6.55075 -6.24557 -3.96186 1.10644 1.74707 1.77009 2.34273 2.80459 3.17593 3.21696 3.23409 3.28116 3.40656 4.03031 4.17207 4.32812 4.42197 4.67092 4.89485 5.03910 5.11057 5.27708 5.56237 5.78402 5.87943 6.05977 6.60763 6.70860 6.76007 7.03153 7.57158 7.59460 7.92690 8.32440 8.51015 9.20966 10.82767 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.063505 B = 0.003019 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.806437 B = 9271.160563 C = 9696.807989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.074 0.926 9 S -0.051 6.051 10 C -0.145 4.145 11 C 0.535 3.465 12 O -0.517 6.517 13 N -0.529 5.529 14 N -0.516 5.516 15 C 0.596 3.404 16 O -0.553 6.553 17 C -0.287 4.287 18 C 0.087 3.913 19 N -0.292 5.292 20 N -0.463 5.463 21 H 0.446 0.554 22 C 0.141 3.859 23 H 0.270 0.730 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.430 0.570 27 H 0.430 0.570 28 H 0.195 0.805 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 -21.834 0.041 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.175 5.825 10 C -0.297 4.297 11 C 0.321 3.679 12 O -0.390 6.390 13 N -0.281 5.281 14 N -0.262 5.262 15 C 0.383 3.617 16 O -0.431 6.431 17 C -0.303 4.303 18 C -0.101 4.101 19 N -0.113 5.113 20 N -0.168 5.168 21 H 0.291 0.709 22 C -0.013 4.013 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.272 0.728 27 H 0.272 0.728 28 H 0.212 0.788 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.227 -22.915 0.036 23.504 hybrid contribution 2.607 1.492 0.005 3.004 sum 7.835 -21.424 0.041 22.811 Atomic orbital electron populations 1.70001 1.05969 1.27682 1.46625 1.24989 0.95033 0.99048 0.94393 0.86205 0.79226 0.81105 0.78864 1.19883 1.20808 1.19890 1.22836 0.95001 0.91483 1.59333 0.90750 1.85422 1.04139 0.96146 1.96790 1.23484 1.07203 0.93247 1.05789 1.20674 0.86423 0.85321 0.75440 1.90719 1.15003 1.84996 1.48237 1.45141 1.10511 0.94082 1.78329 1.44513 1.10227 0.95694 1.75742 1.17185 0.85477 0.82621 0.76418 1.90796 1.14687 1.85453 1.52191 1.19947 0.93362 0.92808 1.24173 1.24236 0.96838 0.92688 0.96374 1.77221 0.98123 1.11460 1.24464 1.46266 1.04378 1.09262 1.56885 0.70868 1.23025 0.97679 0.86453 0.94101 0.92058 0.88445 0.88447 0.72756 0.72769 0.78846 0.78842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.66 13.22 55.49 0.73 -24.93 15 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 15 3 Si 0.92 21.05 29.55 -169.99 -5.02 16.02 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 15 7 C -0.54 -14.94 9.50 30.94 0.29 -14.65 15 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 15 9 S -0.05 -1.33 20.57 -107.50 -2.21 -3.55 15 10 C -0.15 -2.79 6.16 36.01 0.22 -2.57 15 11 C 0.54 9.53 7.96 -10.99 -0.09 9.44 15 12 O -0.52 -10.82 15.70 5.56 0.09 -10.73 15 13 N -0.53 -7.57 6.26 31.22 0.20 -7.37 15 14 N -0.52 -6.52 6.25 30.43 0.19 -6.33 15 15 C 0.60 7.22 7.93 -12.52 -0.10 7.12 15 16 O -0.55 -8.09 16.74 5.27 0.09 -8.00 15 17 C -0.29 -2.69 6.13 -105.07 -0.64 -3.33 15 18 C 0.09 0.75 11.50 -16.98 -0.20 0.56 15 19 N -0.29 -2.61 12.63 30.86 0.39 -2.22 15 20 N -0.46 -2.75 7.29 30.85 0.22 -2.52 15 21 H 0.45 1.02 8.96 -182.72 -1.64 -0.62 15 22 C 0.14 0.95 11.82 -16.56 -0.20 0.76 15 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 24 H 0.10 1.70 8.14 -51.92 -0.42 1.28 15 25 H 0.10 1.70 8.14 -51.91 -0.42 1.28 15 26 H 0.43 5.50 8.00 -182.59 -1.46 4.04 15 27 H 0.43 4.94 6.95 -182.59 -1.27 3.67 15 28 H 0.19 1.23 7.50 -52.48 -0.39 0.83 15 29 H 0.19 0.80 8.06 -52.49 -0.42 0.37 15 LS Contribution 287.91 15.07 4.34 4.34 Total: -1.00 -36.51 287.91 -7.36 -43.87 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.57 Total: 2.09 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.80 Total: -0.67 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 1.73 Total: -43.38 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -2.21 Total: -3.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -36.51 -7.36 -43.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329529223.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.692 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds